Wall clock time and date at job start Mon Mar 30 2020 04:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34336 * 125.40716 * 2 1 4 4 C 1.47568 * 126.59964 * 0.02562 * 3 2 1 5 5 O 1.21449 * 119.99754 * 0.03008 * 4 3 2 6 6 O 1.34750 * 120.00139 * 180.02562 * 4 3 2 7 7 C 1.51082 * 106.80243 * 179.90453 * 3 2 1 8 8 C 1.52995 * 110.28381 * 241.07953 * 7 3 2 9 9 C 1.52998 * 109.93072 * 119.44682 * 7 3 2 10 10 C 1.50692 * 109.47067 * 181.87654 * 9 7 3 11 11 H 1.08000 * 120.00217 * 359.97438 * 10 9 7 12 12 C 1.37885 * 119.99923 * 180.02562 * 10 9 7 13 13 N 1.31521 * 119.99647 * 179.97438 * 12 10 9 14 14 Si 1.86791 * 119.99941 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47275 * 90.00576 * 14 12 10 16 16 H 1.48500 * 109.47004 * 210.00095 * 14 12 10 17 17 H 1.48497 * 109.47179 * 329.99912 * 14 12 10 18 18 O 1.45464 * 106.20315 * 0.35951 * 7 3 2 19 19 C 1.34525 * 107.88867 * 359.78667 * 18 7 3 20 20 O 1.21446 * 125.03739 * 179.97438 * 19 18 7 21 21 H 1.09002 * 109.47152 * 179.71863 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.71963 * 1 2 3 23 23 H 1.09004 * 109.47113 * 299.71944 * 1 2 3 24 24 H 0.96698 * 116.99858 * 180.02562 * 6 4 3 25 25 H 1.08996 * 109.47173 * 177.58399 * 8 7 3 26 26 H 1.09004 * 109.47121 * 297.58288 * 8 7 3 27 27 H 1.09000 * 109.47557 * 57.57747 * 8 7 3 28 28 H 1.08996 * 109.47021 * 301.87856 * 9 7 3 29 29 H 1.09002 * 109.46869 * 61.87359 * 9 7 3 30 30 H 0.96997 * 119.99679 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2853 1.0949 0.0000 4 6 1.8295 2.4984 0.0005 5 8 0.6416 2.7510 0.0016 6 8 2.7313 3.4997 -0.0001 7 6 3.7172 0.6129 0.0024 8 6 4.4396 1.1026 1.2590 9 6 4.4388 1.1155 -1.2496 10 6 5.8515 0.5910 -1.2598 11 1 6.2000 -0.0375 -0.4536 12 6 6.6995 0.9145 -2.2978 13 7 7.9326 0.4571 -2.3063 14 14 6.0970 2.0021 -3.6917 15 1 6.3631 3.4249 -3.3599 16 1 6.8114 1.6439 -4.9433 17 1 4.6377 1.8023 -3.8802 18 8 3.6563 -0.8404 -0.0050 19 6 2.3599 -1.1997 -0.0064 20 8 1.9535 -2.3441 -0.0126 21 1 -0.3633 -1.0277 -0.0050 22 1 -0.3633 0.5182 -0.8875 23 1 -0.3633 0.5095 0.8925 24 1 2.3848 4.4025 0.0007 25 1 5.4572 0.7123 1.2685 26 1 4.4683 2.1923 1.2602 27 1 3.9078 0.7524 2.1437 28 1 3.9140 0.7630 -2.1375 29 1 4.4558 2.2053 -1.2463 30 1 8.5291 0.6844 -3.0367 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075617298.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:54 Heat of formation + Delta-G solvation = -171.868535 kcal Electronic energy + Delta-G solvation = -17678.659859 eV Core-core repulsion = 14632.026882 eV Total energy + Delta-G solvation = -3046.632977 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.088 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.96152 -41.02930 -39.03389 -37.29730 -35.80098 -35.24567 -33.54449 -30.02626 -28.94556 -26.44292 -25.47325 -23.61341 -21.70040 -20.88116 -19.10478 -18.79112 -18.37832 -17.63709 -16.94175 -16.65564 -16.42720 -15.90325 -15.75037 -14.96451 -14.48417 -14.30232 -14.27305 -14.16470 -13.52180 -13.44009 -13.04005 -12.91743 -12.63170 -12.56654 -12.37933 -12.11339 -11.78805 -11.67316 -11.61478 -11.31968 -10.75488 -10.61684 -8.25782 -6.30261 -0.98578 1.10364 1.36559 1.39961 1.48751 1.61833 1.71016 1.96955 2.36700 2.76648 2.79944 3.09200 3.68604 3.92770 3.97358 4.17760 4.37305 4.62750 4.69561 4.80265 4.85373 4.95893 5.05474 5.09006 5.30822 5.40985 5.48497 5.68102 6.09918 6.26533 6.76227 6.88610 7.31635 8.90348 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.022868 B = 0.009825 C = 0.008129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.143291 B = 2849.089831 C = 3443.745890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.102 4.102 3 C -0.133 4.133 4 C 0.565 3.435 5 O -0.505 6.505 6 O -0.491 6.491 7 C 0.142 3.858 8 C -0.133 4.133 9 C -0.005 4.005 10 C -0.516 4.516 11 H 0.043 0.957 12 C 0.009 3.991 13 N -0.947 5.947 14 Si 0.939 3.061 15 H -0.253 1.253 16 H -0.290 1.290 17 H -0.251 1.251 18 O -0.315 6.315 19 C 0.491 3.509 20 O -0.480 6.480 21 H 0.085 0.915 22 H 0.098 0.902 23 H 0.105 0.895 24 H 0.442 0.558 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.017 0.983 29 H 0.071 0.929 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.238 8.493 5.112 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.135 4.135 4 C 0.409 3.591 5 O -0.396 6.396 6 O -0.306 6.306 7 C 0.105 3.895 8 C -0.190 4.190 9 C -0.042 4.042 10 C -0.554 4.554 11 H 0.061 0.939 12 C -0.188 4.188 13 N -0.587 5.587 14 Si 0.763 3.237 15 H -0.177 1.177 16 H -0.216 1.216 17 H -0.175 1.175 18 O -0.230 6.230 19 C 0.335 3.665 20 O -0.368 6.368 21 H 0.104 0.896 22 H 0.116 0.884 23 H 0.123 0.877 24 H 0.305 0.695 25 H 0.084 0.916 26 H 0.124 0.876 27 H 0.090 0.910 28 H 0.035 0.965 29 H 0.089 0.911 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.199 7.536 5.022 16.841 hybrid contribution 0.333 0.436 -0.796 0.967 sum -13.867 7.972 4.226 16.544 Atomic orbital electron populations 1.20692 0.84375 1.04740 1.05102 1.23379 0.99992 0.91282 0.95733 1.21981 0.96201 0.92572 1.02791 1.19143 0.83104 0.84506 0.72384 1.90900 1.17732 1.84801 1.46124 1.84623 1.41053 1.20522 1.84378 1.21992 0.91866 0.74484 1.01184 1.21921 1.00856 1.03551 0.92663 1.19835 0.94594 0.98546 0.91190 1.21114 0.95418 1.30783 1.08108 0.93863 1.25887 0.94726 0.97473 1.00716 1.70052 1.07425 1.47287 1.33945 0.85825 0.79501 0.80050 0.78351 1.17740 1.21589 1.17514 1.87602 1.26384 1.26533 1.82523 1.21516 0.82459 0.89489 0.73061 1.90802 1.76390 1.22949 1.46672 0.89622 0.88365 0.87680 0.69465 0.91607 0.87570 0.91012 0.96490 0.91144 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.06 8.99 71.24 0.64 -1.42 16 2 C -0.10 -3.02 6.26 -18.40 -0.12 -3.14 16 3 C -0.13 -3.97 5.00 -18.17 -0.09 -4.07 16 4 C 0.57 13.77 8.25 70.28 0.58 14.35 16 5 O -0.50 -12.78 16.16 20.00 0.32 -12.46 16 6 O -0.49 -9.30 11.48 -56.60 -0.65 -9.95 16 7 C 0.14 5.26 0.88 -11.42 -0.01 5.25 16 8 C -0.13 -4.33 8.63 71.98 0.62 -3.71 16 9 C 0.00 -0.20 3.29 29.84 0.10 -0.10 16 10 C -0.52 -28.14 8.69 25.60 0.22 -27.92 16 11 H 0.04 2.64 6.99 -2.91 -0.02 2.62 16 12 C 0.01 0.52 5.47 84.66 0.46 0.98 16 13 N -0.95 -57.85 13.96 21.45 0.30 -57.55 16 14 Si 0.94 41.82 27.47 68.60 1.88 43.71 16 15 H -0.25 -10.38 7.11 99.48 0.71 -9.68 16 16 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 17 H -0.25 -10.43 6.54 99.48 0.65 -9.78 16 18 O -0.32 -13.60 10.28 -54.68 -0.56 -14.16 16 19 C 0.49 18.73 8.56 70.17 0.60 19.33 16 20 O -0.48 -20.01 17.86 19.68 0.35 -19.66 16 21 H 0.08 1.80 7.98 -2.39 -0.02 1.78 16 22 H 0.10 2.01 7.99 -2.39 -0.02 2.00 16 23 H 0.10 1.99 8.01 -2.38 -0.02 1.97 16 24 H 0.44 3.23 9.11 -74.06 -0.67 2.56 16 25 H 0.06 2.53 6.72 -2.39 -0.02 2.51 16 26 H 0.11 2.95 7.27 -2.38 -0.02 2.93 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.02 0.76 7.20 -2.39 -0.02 0.74 16 29 H 0.07 2.76 6.60 -2.39 -0.02 2.74 16 30 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -71.20 266.31 5.11 -66.09 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 0.46 Total: 4.43 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 3.01 Total: -0.44 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.30 Total: -57.55 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -0.54 Total: -56.23 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.88 Total: 43.71 kcal Total: -71.20 5.11 -66.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075617298.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.779 kcal (2) G-P(sol) polarization free energy of solvation -71.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds