Wall clock time and date at job start Mon Mar 30 2020 04:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40944 * 125.82704 * 230.07263 * 3 2 1 5 5 C 1.36261 * 107.82573 * 179.97438 * 4 3 2 6 6 C 1.47791 * 126.22507 * 179.97438 * 5 4 3 7 7 C 1.40036 * 120.93169 * 157.08194 * 6 5 4 8 8 C 1.37896 * 118.98819 * 179.72620 * 7 6 5 9 9 N 1.31958 * 120.90472 * 0.56255 * 8 7 6 10 10 C 1.31962 * 122.07067 * 359.71086 * 9 8 7 11 11 C 1.37895 * 120.90438 * 359.97438 * 10 9 8 12 12 N 1.37353 * 107.55344 * 0.02562 * 5 4 3 13 13 C 1.36894 * 126.05289 * 179.97438 * 12 5 4 14 14 H 1.08005 * 120.00129 * 341.19444 * 13 12 5 15 15 C 1.39225 * 119.99981 * 161.18684 * 13 12 5 16 16 N 1.31141 * 119.99713 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00166 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46894 * 60.00619 * 17 15 13 19 19 H 1.48507 * 109.47184 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47582 * 300.00440 * 17 15 13 21 21 N 1.32195 * 125.83193 * 49.76520 * 3 2 1 22 22 H 1.08002 * 126.08275 * 359.97438 * 4 3 2 23 23 H 1.08005 * 120.49919 * 359.97438 * 7 6 5 24 24 H 1.08001 * 119.54267 * 180.24848 * 8 7 6 25 25 H 1.07994 * 119.54656 * 180.02562 * 10 9 8 26 26 H 1.07996 * 120.50289 * 180.02562 * 11 10 9 27 27 H 0.97003 * 119.99477 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3927 0.7344 0.8763 5 6 4.6887 0.4643 0.5538 6 6 5.8875 1.0196 1.2161 7 6 7.1185 0.3551 1.1513 8 6 8.2125 0.9122 1.7792 9 7 8.1076 2.0481 2.4426 10 6 6.9660 2.7037 2.5333 11 6 5.8230 2.2223 1.9305 12 7 4.6784 -0.4170 -0.4996 13 6 5.7790 -0.9391 -1.1241 14 1 6.7396 -0.4569 -1.0181 15 6 5.6602 -2.0918 -1.8959 16 7 4.4938 -2.6771 -2.0249 17 14 7.1619 -2.8038 -2.7486 18 1 8.1871 -3.1559 -1.7335 19 1 6.7719 -4.0226 -3.5022 20 1 7.7206 -1.7989 -3.6884 21 7 3.3422 -0.6913 -0.8182 22 1 3.0570 1.3935 1.6634 23 1 7.2104 -0.5774 0.6142 24 1 9.1672 0.4094 1.7315 25 1 6.9265 3.6303 3.0865 26 1 4.8922 2.7644 2.0085 27 1 4.4109 -3.4800 -2.5629 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076846983.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:43 Heat of formation + Delta-G solvation = 139.744696 kcal Electronic energy + Delta-G solvation = -15662.126516 eV Core-core repulsion = 13000.900525 eV Total energy + Delta-G solvation = -2661.225992 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.071 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.26695 -39.11374 -35.78006 -34.04690 -32.82705 -31.20146 -30.51237 -28.33001 -26.02001 -23.33309 -23.10539 -22.20871 -19.75088 -18.19205 -17.33303 -15.68744 -15.57971 -15.16079 -15.00564 -14.50198 -14.16174 -13.38276 -13.28363 -12.96844 -12.90296 -12.54689 -12.34787 -11.96366 -11.73243 -11.48786 -11.35605 -10.92135 -10.71687 -9.84291 -9.64820 -9.37541 -9.05392 -8.77381 -8.38866 -7.50541 -7.04659 -4.76217 1.39859 1.55798 2.54786 2.83462 2.83922 2.89666 3.28196 3.29933 3.52710 4.02948 4.27838 4.52528 4.60796 4.79867 4.81473 5.24217 5.43289 5.53723 5.62191 5.97217 6.14138 6.17785 6.38528 6.50700 6.57787 6.68709 7.08215 7.11541 7.33029 7.54434 8.11077 8.26001 8.34374 8.78514 9.01636 9.91279 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.014146 B = 0.011691 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.853201 B = 2394.383952 C = 4321.844315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.328 3.672 3 C 0.021 3.979 4 C -0.211 4.211 5 C -0.019 4.019 6 C 0.065 3.935 7 C -0.180 4.180 8 C 0.096 3.904 9 N -0.507 5.507 10 C 0.094 3.906 11 C -0.171 4.171 12 N -0.105 5.105 13 C -0.306 4.306 14 H 0.133 0.867 15 C 0.049 3.951 16 N -0.750 5.750 17 Si 0.938 3.062 18 H -0.259 1.259 19 H -0.272 1.272 20 H -0.260 1.260 21 N -0.229 5.229 22 H 0.134 0.866 23 H 0.152 0.848 24 H 0.150 0.850 25 H 0.149 0.851 26 H 0.133 0.867 27 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.641 3.547 3.408 9.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C 0.013 3.987 3 C -0.127 4.127 4 C -0.245 4.245 5 C -0.143 4.143 6 C 0.055 3.945 7 C -0.201 4.201 8 C -0.060 4.060 9 N -0.217 5.217 10 C -0.062 4.062 11 C -0.192 4.192 12 N 0.126 4.874 13 C -0.443 4.443 14 H 0.151 0.849 15 C -0.173 4.173 16 N -0.375 5.375 17 Si 0.760 3.240 18 H -0.184 1.184 19 H -0.196 1.196 20 H -0.185 1.185 21 N -0.067 5.067 22 H 0.152 0.848 23 H 0.170 0.830 24 H 0.168 0.832 25 H 0.167 0.833 26 H 0.151 0.849 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.459 2.899 2.768 7.602 hybrid contribution 0.166 -0.237 -0.216 0.361 sum 6.625 2.662 2.552 7.582 Atomic orbital electron populations 1.81114 1.11598 1.10865 1.10473 1.24210 0.90775 0.91839 0.91871 1.16975 0.85970 1.06194 1.03518 1.20575 0.90025 1.08631 1.05306 1.18915 0.92820 1.05414 0.97110 1.18328 0.91232 0.92298 0.92598 1.22713 0.92951 1.02322 1.02074 1.22560 0.98356 0.91876 0.93217 1.67565 1.27631 1.08788 1.17722 1.22475 0.87985 0.98790 0.96995 1.22089 1.00269 0.96338 1.00523 1.44975 1.04635 1.22085 1.15705 1.20366 0.86810 1.08403 1.28686 0.84937 1.25855 0.99040 0.95899 0.96491 1.70022 1.23482 1.15573 1.28438 0.85801 0.79467 0.79046 0.79688 1.18354 1.19638 1.18474 1.78747 0.85374 1.22330 1.20291 0.84840 0.83013 0.83223 0.83327 0.84888 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.18 18.54 41.84 0.78 -9.40 15 2 C 0.33 7.25 15.90 -22.47 -0.36 6.89 15 3 C 0.02 0.49 6.94 -84.76 -0.59 -0.10 15 4 C -0.21 -4.33 10.18 -39.27 -0.40 -4.73 15 5 C -0.02 -0.41 6.71 -82.20 -0.55 -0.96 15 6 C 0.07 1.18 5.86 -104.64 -0.61 0.57 15 7 C -0.18 -3.04 8.70 -39.03 -0.34 -3.38 15 8 C 0.10 1.44 11.17 -17.62 -0.20 1.25 15 9 N -0.51 -7.92 10.35 -13.37 -0.14 -8.06 15 10 C 0.09 1.33 11.17 -17.62 -0.20 1.14 15 11 C -0.17 -2.62 9.66 -39.03 -0.38 -3.00 15 12 N -0.10 -2.51 3.72 -8.30 -0.03 -2.54 15 13 C -0.31 -6.91 8.68 -14.93 -0.13 -7.04 15 14 H 0.13 2.65 5.55 -52.48 -0.29 2.36 15 15 C 0.05 1.08 5.49 -17.48 -0.10 0.98 15 16 N -0.75 -18.31 12.01 55.51 0.67 -17.64 15 17 Si 0.94 16.24 29.55 -169.99 -5.02 11.21 15 18 H -0.26 -4.27 7.11 56.52 0.40 -3.87 15 19 H -0.27 -4.72 7.11 56.52 0.40 -4.32 15 20 H -0.26 -4.44 7.11 56.52 0.40 -4.04 15 21 N -0.23 -5.86 10.66 32.35 0.34 -5.51 15 22 H 0.13 2.31 7.82 -52.49 -0.41 1.90 15 23 H 0.15 2.59 5.41 -52.48 -0.28 2.31 15 24 H 0.15 1.80 8.06 -52.49 -0.42 1.38 15 25 H 0.15 1.62 8.06 -52.49 -0.42 1.20 15 26 H 0.13 1.78 7.60 -52.49 -0.40 1.38 15 27 H 0.29 6.39 8.30 -40.82 -0.34 6.05 15 LS Contribution 257.40 15.07 3.88 3.88 Total: -1.00 -27.37 257.40 -4.74 -32.10 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -1.36 Total: 4.35 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -3.85 Total: -8.40 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 1.62 Total: -43.15 kcal Atomic # 14 Polarization: 16.24 SS G_CDS: -5.02 Total: 11.21 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.37 -4.74 -32.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076846983.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.849 kcal (2) G-P(sol) polarization free energy of solvation -27.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds