Wall clock time and date at job start Mon Mar 30 2020 04:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40944 * 125.82704 * 230.07263 * 3 2 1 5 5 C 1.36261 * 107.82573 * 179.97438 * 4 3 2 6 6 C 1.47791 * 126.22507 * 179.97438 * 5 4 3 7 7 C 1.40036 * 120.93169 * 157.08194 * 6 5 4 8 8 C 1.37896 * 118.98819 * 179.72620 * 7 6 5 9 9 N 1.31958 * 120.90472 * 0.56255 * 8 7 6 10 10 C 1.31962 * 122.07067 * 359.71086 * 9 8 7 11 11 C 1.37895 * 120.90438 * 359.97438 * 10 9 8 12 12 N 1.37353 * 107.55344 * 0.02562 * 5 4 3 13 13 C 1.36894 * 126.05289 * 179.97438 * 12 5 4 14 14 H 1.08005 * 120.00129 * 341.19444 * 13 12 5 15 15 C 1.39225 * 119.99981 * 161.18684 * 13 12 5 16 16 N 1.31141 * 119.99713 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00166 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46894 * 60.00619 * 17 15 13 19 19 H 1.48507 * 109.47184 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47582 * 300.00440 * 17 15 13 21 21 N 1.32195 * 125.83193 * 49.76520 * 3 2 1 22 22 H 1.08002 * 126.08275 * 359.97438 * 4 3 2 23 23 H 1.08005 * 120.49919 * 359.97438 * 7 6 5 24 24 H 1.08001 * 119.54267 * 180.24848 * 8 7 6 25 25 H 1.07994 * 119.54656 * 180.02562 * 10 9 8 26 26 H 1.07996 * 120.50289 * 180.02562 * 11 10 9 27 27 H 0.97003 * 119.99477 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3927 0.7344 0.8763 5 6 4.6887 0.4643 0.5538 6 6 5.8875 1.0196 1.2161 7 6 7.1185 0.3551 1.1513 8 6 8.2125 0.9122 1.7792 9 7 8.1076 2.0481 2.4426 10 6 6.9660 2.7037 2.5333 11 6 5.8230 2.2223 1.9305 12 7 4.6784 -0.4170 -0.4996 13 6 5.7790 -0.9391 -1.1241 14 1 6.7396 -0.4569 -1.0181 15 6 5.6602 -2.0918 -1.8959 16 7 4.4938 -2.6771 -2.0249 17 14 7.1619 -2.8038 -2.7486 18 1 8.1871 -3.1559 -1.7335 19 1 6.7719 -4.0226 -3.5022 20 1 7.7206 -1.7989 -3.6884 21 7 3.3422 -0.6913 -0.8182 22 1 3.0570 1.3935 1.6634 23 1 7.2104 -0.5774 0.6142 24 1 9.1672 0.4094 1.7315 25 1 6.9265 3.6303 3.0865 26 1 4.8922 2.7644 2.0085 27 1 4.4109 -3.4800 -2.5629 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076846983.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:43 Heat of formation + Delta-G solvation = 123.858411 kcal Electronic energy + Delta-G solvation = -15662.815397 eV Core-core repulsion = 13000.900525 eV Total energy + Delta-G solvation = -2661.914873 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.071 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.85201 -40.43866 -37.53089 -35.71072 -34.22793 -32.73116 -31.85256 -29.90740 -27.73067 -24.66976 -24.54498 -23.73018 -21.28479 -19.81591 -18.89622 -17.12391 -16.97632 -16.54732 -16.32747 -16.01322 -15.82813 -14.69597 -14.51625 -14.47513 -14.44121 -14.23537 -14.06088 -13.53453 -13.29126 -12.91853 -12.84803 -12.26373 -12.09648 -11.35128 -11.17800 -11.02408 -10.32449 -10.09136 -9.94302 -9.12672 -8.68945 -6.49686 0.05661 0.37749 0.80200 1.39904 1.42371 1.55362 1.58996 1.79499 2.03060 2.40579 2.72590 2.89989 3.14889 3.20243 3.73589 3.92465 4.12896 4.30974 4.37513 4.45713 4.85310 4.86252 4.97726 5.00993 5.17917 5.19954 5.64704 5.71932 5.86935 5.91197 6.44665 6.50085 7.13371 7.16207 7.29565 8.29913 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.014146 B = 0.011691 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.853201 B = 2394.383952 C = 4321.844315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.333 3.667 3 C 0.003 3.997 4 C -0.204 4.204 5 C -0.018 4.018 6 C 0.036 3.964 7 C -0.188 4.188 8 C 0.100 3.900 9 N -0.514 5.514 10 C 0.099 3.901 11 C -0.164 4.164 12 N -0.124 5.124 13 C -0.330 4.330 14 H 0.152 0.848 15 C 0.007 3.993 16 N -0.803 5.803 17 Si 1.010 2.990 18 H -0.241 1.241 19 H -0.276 1.276 20 H -0.254 1.254 21 N -0.278 5.278 22 H 0.167 0.833 23 H 0.144 0.856 24 H 0.180 0.820 25 H 0.187 0.813 26 H 0.153 0.847 27 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.723 4.890 4.576 11.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C 0.019 3.981 3 C -0.145 4.145 4 C -0.238 4.238 5 C -0.142 4.142 6 C 0.026 3.974 7 C -0.208 4.208 8 C -0.056 4.056 9 N -0.224 5.224 10 C -0.057 4.057 11 C -0.185 4.185 12 N 0.106 4.894 13 C -0.465 4.465 14 H 0.169 0.831 15 C -0.209 4.209 16 N -0.430 5.430 17 Si 0.827 3.173 18 H -0.165 1.165 19 H -0.201 1.201 20 H -0.178 1.178 21 N -0.117 5.117 22 H 0.185 0.815 23 H 0.162 0.838 24 H 0.197 0.803 25 H 0.204 0.796 26 H 0.171 0.829 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.544 4.258 3.950 10.332 hybrid contribution -0.442 -0.514 -0.444 0.810 sum 8.103 3.744 3.507 9.590 Atomic orbital electron populations 1.81099 1.11514 1.11135 1.10747 1.24152 0.90633 0.91663 0.91691 1.17191 0.86237 1.06807 1.04228 1.20990 0.89448 1.08149 1.05205 1.19548 0.94393 1.04137 0.96144 1.18465 0.90644 0.94044 0.94234 1.22730 0.93258 1.02301 1.02537 1.22966 0.98890 0.91640 0.92079 1.67684 1.28284 1.08867 1.17586 1.23079 0.86956 0.99553 0.96084 1.22339 1.01722 0.95200 0.99267 1.45211 1.04282 1.23115 1.16766 1.20962 0.87305 1.09016 1.29266 0.83059 1.26947 1.01773 0.95743 0.96458 1.70164 1.26100 1.16501 1.30218 0.84761 0.75844 0.77910 0.78739 1.16450 1.20090 1.17762 1.78632 0.86763 1.24130 1.22205 0.81508 0.83822 0.80301 0.79568 0.82886 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -20.58 18.54 19.00 0.35 -20.23 15 2 C 0.33 14.89 15.90 88.33 1.40 16.29 15 3 C 0.00 0.15 6.94 41.00 0.28 0.44 15 4 C -0.20 -8.26 10.18 22.47 0.23 -8.03 15 5 C -0.02 -0.77 6.71 40.35 0.27 -0.50 15 6 C 0.04 1.24 5.86 -19.88 -0.12 1.12 15 7 C -0.19 -6.02 8.70 22.62 0.20 -5.83 15 8 C 0.10 2.71 11.17 84.59 0.94 3.66 15 9 N -0.51 -14.18 10.35 -196.21 -2.03 -16.21 15 10 C 0.10 2.42 11.17 84.59 0.94 3.37 15 11 C -0.16 -4.53 9.66 22.62 0.22 -4.31 15 12 N -0.12 -6.06 3.72 -180.17 -0.67 -6.73 15 13 C -0.33 -15.13 8.68 84.14 0.73 -14.40 15 14 H 0.15 6.05 5.55 -2.91 -0.02 6.03 15 15 C 0.01 0.31 5.49 85.03 0.47 0.78 15 16 N -0.80 -40.81 12.01 21.70 0.26 -40.55 15 17 Si 1.01 33.09 29.55 68.60 2.03 35.11 15 18 H -0.24 -7.13 7.11 99.48 0.71 -6.42 15 19 H -0.28 -9.12 7.11 99.48 0.71 -8.41 15 20 H -0.25 -7.95 7.11 99.48 0.71 -7.25 15 21 N -0.28 -14.73 10.66 -51.56 -0.55 -15.28 15 22 H 0.17 5.39 7.82 -2.91 -0.02 5.37 15 23 H 0.14 4.80 5.41 -2.91 -0.02 4.79 15 24 H 0.18 3.67 8.06 -2.91 -0.02 3.64 15 25 H 0.19 3.09 8.06 -2.91 -0.02 3.07 15 26 H 0.15 3.53 7.60 -2.91 -0.02 3.51 15 27 H 0.29 13.43 8.30 -92.71 -0.77 12.66 15 Total: -1.00 -60.51 257.40 6.19 -54.32 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 1.23 Total: 16.99 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: 5.57 Total: -7.42 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -2.64 Total: -99.00 kcal Atomic # 14 Polarization: 33.09 SS G_CDS: 2.03 Total: 35.11 kcal Total: -60.51 6.19 -54.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076846983.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.179 kcal (2) G-P(sol) polarization free energy of solvation -60.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds