Wall clock time and date at job start Mon Mar 30 2020 04:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31647 * 1 3 3 Si 1.86796 * 120.00246 * 2 1 4 4 H 1.48501 * 109.47279 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47247 * 299.99979 * 3 2 1 6 6 H 1.48498 * 109.47018 * 59.99786 * 3 2 1 7 7 C 1.38729 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00247 * 163.28155 * 7 2 1 9 9 N 1.36802 * 120.00259 * 343.28962 * 7 2 1 10 10 C 1.47036 * 120.56847 * 334.77835 * 9 7 2 11 11 C 1.53547 * 108.24782 * 225.13656 * 10 9 7 12 12 N 1.47160 * 108.09947 * 303.28900 * 11 10 9 13 13 C 1.40128 * 118.67863 * 45.30185 * 12 11 10 14 14 C 1.38578 * 120.24279 * 163.24108 * 13 12 11 15 15 C 1.38449 * 119.89937 * 179.64808 * 14 13 12 16 16 F 1.35105 * 119.89519 * 180.02562 * 15 14 13 17 17 C 1.38774 * 120.21222 * 359.97438 * 15 14 13 18 18 F 1.35096 * 119.90340 * 180.02562 * 17 15 14 19 19 C 1.38310 * 120.19431 * 0.02804 * 17 15 14 20 20 C 1.38857 * 119.87474 * 0.06184 * 19 17 15 21 21 H 0.96993 * 119.99650 * 5.03330 * 1 2 3 22 22 H 1.08997 * 109.71224 * 344.82917 * 10 9 7 23 23 H 1.09006 * 109.70834 * 105.44884 * 10 9 7 24 24 H 1.09004 * 109.71452 * 63.07845 * 11 10 9 25 25 H 1.08991 * 109.72497 * 183.68767 * 11 10 9 26 26 H 0.96998 * 120.69433 * 225.14885 * 12 11 10 27 27 H 1.08005 * 120.04954 * 359.66765 * 14 13 12 28 28 H 1.08002 * 120.06170 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2505 1.6177 0.0000 4 1 3.7105 1.3463 0.0006 5 1 1.8918 2.3964 -1.2125 6 1 1.8918 2.3964 1.2125 7 6 2.0101 -1.2014 0.0005 8 1 3.0558 -1.2214 -0.2685 9 7 1.3695 -2.3610 0.3417 10 6 0.1827 -2.3323 1.2093 11 6 0.3318 -3.4375 2.2647 12 7 0.5138 -4.7182 1.5630 13 6 1.4091 -4.7738 0.4864 14 6 1.8717 -5.9962 0.0258 15 6 2.7504 -6.0432 -1.0431 16 9 3.2010 -7.2350 -1.4925 17 6 3.1692 -4.8702 -1.6550 18 9 4.0264 -4.9234 -2.6978 19 6 2.7115 -3.6467 -1.2003 20 6 1.8315 -3.5926 -0.1276 21 1 -0.4849 0.8368 -0.0737 22 1 0.1099 -1.3621 1.7007 23 1 -0.7125 -2.5112 0.6136 24 1 1.1993 -3.2324 2.8920 25 1 -0.5659 -3.4808 2.8813 26 1 0.0257 -5.5090 1.8411 27 1 1.5469 -6.9108 0.4996 28 1 3.0385 -2.7352 -1.6784 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076896042.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:35 Heat of formation + Delta-G solvation = -45.026924 kcal Electronic energy + Delta-G solvation = -17047.928579 eV Core-core repulsion = 13928.001103 eV Total energy + Delta-G solvation = -3119.927477 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.077 amu Computer time = -0.90 seconds Orbital eigenvalues (eV) -48.40093 -47.48300 -39.24525 -35.63816 -34.52547 -31.94246 -29.40911 -28.80131 -26.66760 -24.05830 -22.83417 -21.96230 -19.54317 -17.82198 -17.20490 -16.80713 -15.80508 -15.48744 -15.25824 -14.80936 -14.22551 -14.14408 -13.97523 -13.80353 -13.22720 -12.97756 -12.56189 -12.18309 -12.06169 -11.67334 -11.24330 -11.15309 -10.76820 -10.66475 -10.46843 -10.13123 -9.39570 -9.03657 -8.63533 -7.30365 -6.59092 -6.34240 -3.86838 2.12015 2.16896 3.04919 3.11768 3.16296 3.88228 4.03654 4.38237 4.62755 4.88612 5.12994 5.39747 5.55856 5.68661 5.82589 5.94822 6.16864 6.27336 6.44358 6.70203 6.78858 6.97670 7.02190 7.02844 7.24204 7.63726 7.73962 7.99580 8.34973 8.45766 9.07630 9.44091 10.46082 Molecular weight = 240.08amu Principal moments of inertia in cm(-1) A = 0.027309 B = 0.008796 C = 0.006899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.072118 B = 3182.406196 C = 4057.663256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.029 3.971 3 Si 0.927 3.073 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.301 4.301 8 H 0.097 0.903 9 N -0.439 5.439 10 C 0.127 3.873 11 C 0.103 3.897 12 N -0.755 5.755 13 C 0.128 3.872 14 C -0.153 4.153 15 C -0.025 4.025 16 F -0.155 7.155 17 C 0.080 3.920 18 F -0.150 7.150 19 C -0.204 4.204 20 C 0.177 3.823 21 H 0.272 0.728 22 H 0.101 0.899 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.393 0.607 27 H 0.123 0.877 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 -4.349 3.673 5.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.176 4.176 3 Si 0.753 3.247 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.429 4.429 8 H 0.115 0.885 9 N -0.126 5.126 10 C 0.002 3.998 11 C -0.022 4.022 12 N -0.390 5.390 13 C 0.024 3.976 14 C -0.179 4.179 15 C -0.050 4.050 16 F -0.135 7.135 17 C 0.058 3.942 18 F -0.129 7.129 19 C -0.232 4.232 20 C 0.059 3.941 21 H 0.082 0.918 22 H 0.119 0.881 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.227 0.773 27 H 0.141 0.859 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.500 -3.690 3.877 5.375 hybrid contribution 0.286 0.345 -0.245 0.511 sum -0.213 -3.344 3.632 4.942 Atomic orbital electron populations 1.70022 1.05969 1.28192 1.46535 1.25398 0.95599 1.00022 0.96602 0.85838 0.79821 0.80955 0.78087 1.19044 1.20513 1.20428 1.19653 0.94774 0.83049 1.45439 0.88534 1.42579 1.26046 1.01866 1.42075 1.21883 0.88181 0.98466 0.91228 1.22051 1.00398 0.84842 0.94955 1.44268 1.48419 1.11392 1.34912 1.16920 0.97260 0.91702 0.91702 1.19769 1.01954 0.96508 0.99649 1.16671 1.07042 0.79097 1.02140 1.91349 1.88718 1.44245 1.89151 1.17174 0.95107 0.93198 0.88711 1.91386 1.68306 1.97320 1.55852 1.19987 1.06884 0.95832 1.00462 1.17367 0.98290 0.85464 0.93012 0.91778 0.88131 0.92419 0.92977 0.90647 0.77333 0.85886 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.70 11.13 55.49 0.62 -21.09 15 2 C 0.03 0.69 4.93 -17.45 -0.09 0.60 15 3 Si 0.93 18.91 29.59 -169.99 -5.03 13.88 15 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 5 H -0.28 -5.76 7.11 56.52 0.40 -5.35 15 6 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 7 C -0.30 -7.44 8.71 -15.15 -0.13 -7.57 15 8 H 0.10 2.37 7.05 -52.49 -0.37 2.00 15 9 N -0.44 -10.35 3.00 -112.23 -0.34 -10.68 15 10 C 0.13 2.68 5.18 -3.47 -0.02 2.66 15 11 C 0.10 1.73 7.29 -3.40 -0.02 1.71 15 12 N -0.76 -12.74 5.84 -57.65 -0.34 -13.07 15 13 C 0.13 2.55 6.53 -83.41 -0.54 2.01 15 14 C -0.15 -2.89 9.91 -39.38 -0.39 -3.28 15 15 C -0.03 -0.52 7.30 -39.31 -0.29 -0.80 15 16 F -0.16 -3.15 17.17 2.25 0.04 -3.11 15 17 C 0.08 1.73 7.30 -39.36 -0.29 1.45 15 18 F -0.15 -3.19 17.17 2.25 0.04 -3.16 15 19 C -0.20 -4.59 9.20 -39.33 -0.36 -4.95 15 20 C 0.18 4.00 6.34 -83.53 -0.53 3.47 15 21 H 0.27 6.42 8.32 -40.82 -0.34 6.08 15 22 H 0.10 2.23 6.35 -51.93 -0.33 1.90 15 23 H 0.06 1.29 8.14 -51.93 -0.42 0.87 15 24 H 0.05 0.90 8.14 -51.93 -0.42 0.47 15 25 H 0.08 1.01 8.14 -51.93 -0.42 0.58 15 26 H 0.39 5.40 8.90 -40.82 -0.36 5.03 15 27 H 0.12 1.97 8.06 -52.48 -0.42 1.55 15 28 H 0.14 3.09 6.81 -52.49 -0.36 2.73 15 LS Contribution 247.81 15.07 3.73 3.73 Total: -1.00 -26.37 247.81 -6.18 -32.55 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -2.25 Total: 5.64 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.66 Total: -4.70 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -0.05 Total: -44.84 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.08 Total: -6.27 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -26.37 -6.18 -32.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076896042.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.478 kcal (2) G-P(sol) polarization free energy of solvation -26.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.90 seconds