Wall clock time and date at job start Mon Mar 30 2020 03:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28638 * 124.72192 * 2 1 4 4 C 1.33559 * 115.76813 * 179.97438 * 3 2 1 5 5 C 1.47271 * 123.14335 * 180.02562 * 4 3 2 6 6 O 1.21627 * 120.00348 * 180.02562 * 5 4 3 7 7 N 1.34779 * 119.99828 * 0.02562 * 5 4 3 8 8 C 1.46496 * 119.99965 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.47464 * 325.00834 * 8 7 5 10 10 C 1.53006 * 109.46995 * 85.00573 * 8 7 5 11 11 C 1.50699 * 109.47248 * 205.00258 * 8 7 5 12 12 H 1.07999 * 120.00019 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99908 * 180.02562 * 11 8 7 14 14 N 1.31510 * 120.00364 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99946 * 180.02562 * 13 11 8 16 16 H 1.48505 * 109.46997 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47438 * 119.99776 * 15 13 11 18 18 H 1.48494 * 109.47197 * 239.99736 * 15 13 11 19 19 C 1.35202 * 113.71646 * 0.27158 * 4 3 2 20 20 S 1.70768 * 124.71902 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.47178 * 90.00115 * 1 2 3 22 22 H 1.09007 * 109.47417 * 209.99791 * 1 2 3 23 23 H 1.08997 * 109.47477 * 329.99887 * 1 2 3 24 24 H 0.97003 * 120.00044 * 0.02562 * 7 5 4 25 25 H 1.09001 * 109.47002 * 299.99701 * 10 8 7 26 26 H 1.08993 * 109.46955 * 60.00138 * 10 8 7 27 27 H 1.09000 * 109.47050 * 179.97438 * 10 8 7 28 28 H 0.96999 * 120.00396 * 180.02562 * 14 13 11 29 29 H 1.08000 * 125.58523 * 179.73516 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2397 1.0573 0.0000 4 6 3.5590 0.8494 0.0005 5 6 4.5463 1.9422 0.0012 6 8 5.7356 1.6874 0.0012 7 7 4.1320 3.2247 0.0018 8 6 5.1140 4.3118 0.0018 9 1 5.9825 4.0168 0.5908 10 6 5.5486 4.6065 -1.4353 11 6 4.4955 5.5475 0.6030 12 1 3.4733 5.5253 0.9506 13 6 5.2347 6.7065 0.7091 14 7 6.4797 6.7336 0.2862 15 14 4.4683 8.2382 1.4549 16 1 3.0666 7.9479 1.8502 17 1 5.2458 8.6483 2.6518 18 1 4.4829 9.3360 0.4552 19 6 3.9035 -0.4579 -0.0049 20 16 2.4796 -1.4036 0.0006 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 3.1835 3.4280 0.0021 25 1 5.9960 3.7127 -1.8701 26 1 4.6802 4.9015 -2.0242 27 1 6.2790 5.4156 -1.4353 28 1 6.9999 7.5488 0.3613 29 1 4.9130 -0.8418 -0.0095 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082367181.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:18 Heat of formation + Delta-G solvation = -27.108205 kcal Electronic energy + Delta-G solvation = -14599.623728 eV Core-core repulsion = 12034.313652 eV Total energy + Delta-G solvation = -2565.310076 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.46243 -39.69927 -36.81271 -34.37253 -33.25612 -30.99684 -29.27977 -27.40659 -26.23742 -23.14996 -21.89358 -20.85861 -19.89437 -18.44212 -17.43970 -16.93968 -16.49936 -16.40741 -15.59589 -15.30573 -14.84852 -14.45726 -14.30478 -13.81194 -13.36351 -13.12353 -13.01539 -12.92467 -12.89479 -12.77973 -12.32948 -12.15490 -11.17224 -11.11775 -10.79990 -10.64592 -10.63821 -10.00964 -9.67495 -8.21118 -6.39037 -0.48195 0.29141 0.59191 0.97840 1.43053 1.43192 1.56605 2.32027 2.37226 2.55883 3.07901 3.09564 3.88063 4.15442 4.29922 4.58104 4.68245 4.76053 4.85777 4.88523 5.02030 5.22710 5.35527 5.53554 5.61486 5.82034 6.03234 6.45768 6.66537 6.88176 7.23787 7.39581 8.85902 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.038343 B = 0.005663 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.073016 B = 4942.805677 C = 5466.777848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.013 3.987 3 N -0.477 5.477 4 C -0.010 4.010 5 C 0.570 3.430 6 O -0.591 6.591 7 N -0.687 5.687 8 C 0.267 3.733 9 H 0.003 0.997 10 C -0.133 4.133 11 C -0.550 4.550 12 H 0.069 0.931 13 C 0.016 3.984 14 N -0.916 5.916 15 Si 0.977 3.023 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.275 1.275 19 C -0.246 4.246 20 S 0.300 5.700 21 H 0.103 0.897 22 H 0.112 0.888 23 H 0.086 0.914 24 H 0.406 0.594 25 H 0.013 0.987 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.268 0.732 29 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.001 -15.939 -0.885 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.266 4.266 3 N -0.194 5.194 4 C -0.144 4.144 5 C 0.355 3.645 6 O -0.474 6.474 7 N -0.333 5.333 8 C 0.164 3.836 9 H 0.021 0.979 10 C -0.191 4.191 11 C -0.588 4.588 12 H 0.087 0.913 13 C -0.185 4.185 14 N -0.554 5.554 15 Si 0.801 3.199 16 H -0.186 1.186 17 H -0.206 1.206 18 H -0.200 1.200 19 C -0.389 4.389 20 S 0.558 5.442 21 H 0.121 0.879 22 H 0.131 0.869 23 H 0.105 0.895 24 H 0.242 0.758 25 H 0.032 0.968 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -13.484 -16.480 -0.899 21.312 hybrid contribution 0.752 1.891 0.275 2.053 sum -12.732 -14.590 -0.624 19.374 Atomic orbital electron populations 1.20678 0.81843 1.05692 1.05461 1.27912 1.04125 0.91761 1.02829 1.66911 1.02614 1.33378 1.16500 1.20254 0.90293 0.93494 1.10402 1.17754 0.87036 0.83117 0.76637 1.90716 1.17994 1.84574 1.54082 1.46208 1.11512 1.05123 1.70504 1.18496 0.87438 0.83926 0.93708 0.97866 1.21898 1.00631 0.99518 0.97099 1.21520 0.99808 0.95682 1.41777 0.91311 1.25822 0.95176 1.02115 0.95339 1.70046 1.09508 1.29157 1.46709 0.85227 0.78699 0.78087 0.77902 1.18634 1.20599 1.20033 1.26845 1.08246 0.96918 1.06850 1.82185 0.90795 1.08389 1.62861 0.87852 0.86915 0.89513 0.75821 0.96829 0.94243 0.90852 0.92325 0.79425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.46 71.24 0.74 -0.19 15 2 C 0.01 0.28 7.34 88.58 0.65 0.93 15 3 N -0.48 -15.21 10.12 -180.84 -1.83 -17.04 15 4 C -0.01 -0.35 6.70 40.56 0.27 -0.08 15 5 C 0.57 26.78 7.76 86.62 0.67 27.46 15 6 O -0.59 -31.63 16.37 -4.12 -0.07 -31.69 15 7 N -0.69 -33.33 5.07 -449.51 -2.28 -35.61 15 8 C 0.27 15.00 2.56 44.25 0.11 15.12 15 9 H 0.00 0.22 7.58 -2.39 -0.02 0.20 15 10 C -0.13 -7.17 9.26 71.98 0.67 -6.50 15 11 C -0.55 -31.02 8.73 25.60 0.22 -30.79 15 12 H 0.07 3.71 7.74 -2.91 -0.02 3.69 15 13 C 0.02 0.87 5.30 84.66 0.45 1.32 15 14 N -0.92 -53.88 11.32 21.45 0.24 -53.64 15 15 Si 0.98 43.41 29.54 68.60 2.03 45.43 15 16 H -0.26 -11.15 7.11 99.48 0.71 -10.45 15 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 19 C -0.25 -7.01 10.62 67.12 0.71 -6.30 15 20 S 0.30 5.20 22.92 -56.49 -1.29 3.90 15 21 H 0.10 0.96 8.14 -2.39 -0.02 0.94 15 22 H 0.11 0.64 8.14 -2.38 -0.02 0.62 15 23 H 0.09 1.19 8.14 -2.39 -0.02 1.17 15 24 H 0.41 18.13 8.06 -92.71 -0.75 17.39 15 25 H 0.01 0.68 8.14 -2.39 -0.02 0.66 15 26 H 0.04 1.97 8.14 -2.39 -0.02 1.95 15 27 H 0.07 4.23 6.07 -2.39 -0.01 4.22 15 28 H 0.27 14.72 8.31 -92.71 -0.77 13.95 15 29 H 0.19 5.15 8.03 -2.91 -0.02 5.13 15 Total: -1.00 -72.64 271.87 1.73 -70.91 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.43 Total: 16.78 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 4.50 Total: 0.96 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -3.86 Total: -106.29 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.07 Total: -31.69 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.29 Total: 3.90 kcal Total: -72.64 1.73 -70.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082367181.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.799 kcal (2) G-P(sol) polarization free energy of solvation -72.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds