Wall clock time and date at job start Mon Mar 30 2020 04:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86803 * 119.99829 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99921 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99778 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00119 * 3 2 1 7 7 C 1.39875 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99748 * 179.97438 * 7 2 1 9 9 C 1.41157 * 119.99903 * 0.28301 * 7 2 1 10 10 N 1.32214 * 120.83086 * 359.74034 * 9 7 2 11 11 S 1.70023 * 105.77546 * 179.97438 * 10 9 7 12 12 C 1.77370 * 94.35645 * 0.02562 * 11 10 9 13 13 N 1.37998 * 127.69959 * 180.02562 * 12 11 10 14 14 C 1.47442 * 110.99879 * 239.89712 * 13 12 11 15 15 C 1.54318 * 107.23302 * 123.25859 * 14 13 12 16 16 C 1.55133 * 103.01915 * 22.28221 * 15 14 13 17 17 H 1.08998 * 110.99065 * 82.47762 * 16 15 14 18 18 N 1.46904 * 110.99182 * 206.25844 * 16 15 14 19 19 C 1.47844 * 110.99872 * 0.73756 * 13 12 11 20 20 N 1.31364 * 104.60123 * 359.76661 * 12 11 10 21 21 H 0.96996 * 120.00439 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.88747 * 242.66061 * 14 13 12 23 23 H 1.08994 * 109.89206 * 3.68274 * 14 13 12 24 24 H 1.09000 * 110.70421 * 140.66951 * 15 14 13 25 25 H 1.09005 * 110.70443 * 263.72231 * 15 14 13 26 26 H 1.00897 * 111.00597 * 180.02562 * 18 16 15 27 27 H 1.00906 * 110.99388 * 303.95263 * 18 16 15 28 28 H 1.08993 * 110.37424 * 332.46879 * 19 13 12 29 29 H 1.09001 * 110.37166 * 94.80690 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4900 2.0464 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5401 1.4403 0.7000 7 6 2.0080 -1.2113 0.0005 8 1 3.0880 -1.2112 0.0001 9 6 1.3022 -2.4338 -0.0049 10 7 -0.0198 -2.4530 -0.0055 11 16 -0.4582 -4.0957 -0.0134 12 6 1.2158 -4.6819 -0.0148 13 7 1.6515 -5.9913 -0.0210 14 6 2.4722 -6.2808 1.1691 15 6 1.8150 -7.4708 1.8993 16 6 0.9840 -8.1518 0.7802 17 1 1.6078 -8.8118 0.1775 18 7 -0.1590 -8.8823 1.3440 19 6 0.5091 -6.9296 -0.0446 20 7 1.9485 -3.5916 -0.0144 21 1 -0.4850 0.8400 -0.0004 22 1 3.4851 -6.5456 0.8656 23 1 2.4973 -5.4092 1.8232 24 1 2.5731 -8.1523 2.2855 25 1 1.1686 -7.1199 2.7038 26 1 -0.6994 -9.3256 0.6163 27 1 0.1457 -9.5570 2.0296 28 1 -0.3653 -6.4746 0.4204 29 1 0.2837 -7.2273 -1.0686 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082376077.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:02 Heat of formation + Delta-G solvation = 35.583597 kcal Electronic energy + Delta-G solvation = -14818.713607 eV Core-core repulsion = 12288.414802 eV Total energy + Delta-G solvation = -2530.298805 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.92049 -39.51823 -35.77430 -34.85718 -32.00736 -30.74450 -29.11848 -28.49380 -24.88358 -22.81605 -21.95863 -20.52992 -19.09711 -18.65303 -17.63596 -17.37337 -16.62602 -16.25956 -15.57689 -15.08502 -15.00332 -14.57419 -14.41159 -13.66496 -13.37941 -13.17522 -12.89659 -12.66108 -12.34613 -12.10143 -12.00440 -11.86403 -11.66258 -11.26983 -10.83237 -10.18639 -9.97642 -9.66012 -9.23352 -8.57379 -6.82159 0.15802 0.64276 1.38632 1.39466 1.56548 1.80154 2.16339 2.19829 2.46676 3.27282 3.39847 3.51003 3.63446 4.10645 4.13569 4.26788 4.49181 4.63627 4.73494 4.78119 4.90351 5.09842 5.11372 5.33176 5.59294 5.69803 6.01712 6.23531 6.47718 6.59273 6.64979 7.50998 8.34344 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.055264 B = 0.006178 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.538079 B = 4531.356287 C = 4866.736488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.017 3.983 3 Si 1.011 2.989 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.251 1.251 7 C -0.432 4.432 8 H 0.097 0.903 9 C 0.331 3.669 10 N -0.517 5.517 11 S -0.055 6.055 12 C 0.294 3.706 13 N -0.430 5.430 14 C 0.050 3.950 15 C -0.126 4.126 16 C 0.097 3.903 17 H 0.082 0.918 18 N -0.847 5.847 19 C 0.037 3.963 20 N -0.558 5.558 21 H 0.286 0.714 22 H 0.109 0.891 23 H 0.043 0.957 24 H 0.116 0.884 25 H 0.070 0.930 26 H 0.355 0.645 27 H 0.360 0.640 28 H 0.063 0.937 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.421 -14.455 2.824 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.204 4.204 3 Si 0.829 3.171 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.174 1.174 7 C -0.477 4.477 8 H 0.115 0.885 9 C 0.073 3.927 10 N -0.354 5.354 11 S 0.073 5.927 12 C -0.089 4.089 13 N -0.152 5.152 14 C -0.077 4.077 15 C -0.164 4.164 16 C -0.015 4.015 17 H 0.100 0.900 18 N -0.381 5.381 19 C -0.091 4.091 20 N -0.286 5.286 21 H 0.097 0.903 22 H 0.127 0.873 23 H 0.062 0.938 24 H 0.134 0.866 25 H 0.088 0.912 26 H 0.170 0.830 27 H 0.175 0.825 28 H 0.081 0.919 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.127 -13.299 2.641 13.725 hybrid contribution 0.865 0.216 -0.055 0.893 sum 2.992 -13.084 2.586 13.668 Atomic orbital electron populations 1.70057 1.09174 1.30031 1.31097 1.27107 0.95858 1.05084 0.92303 0.84790 0.78643 0.73991 0.79712 1.18363 1.18925 1.17408 1.19299 0.94850 0.87627 1.45941 0.88504 1.20519 0.87001 0.91659 0.93554 1.79339 1.12658 0.98051 1.45371 1.85236 1.18716 1.09347 1.79369 1.27892 0.92451 0.93555 0.95014 1.59734 1.19868 0.96358 1.39230 1.23038 0.98390 0.98523 0.87755 1.22858 0.99854 0.96175 0.97547 1.22274 0.91681 0.93298 0.94258 0.90036 1.58442 1.23497 1.35820 1.20316 1.23552 0.90496 0.92269 1.02791 1.67743 1.37267 0.97599 1.25955 0.90327 0.87305 0.93834 0.86556 0.91158 0.83046 0.82474 0.91921 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -44.90 11.55 21.81 0.25 -44.64 15 2 C 0.02 0.89 5.49 85.23 0.47 1.36 15 3 Si 1.01 39.84 29.56 68.60 2.03 41.87 15 4 H -0.26 -9.77 7.11 99.48 0.71 -9.06 15 5 H -0.26 -9.85 7.11 99.48 0.71 -9.15 15 6 H -0.25 -9.39 7.11 99.48 0.71 -8.68 15 7 C -0.43 -25.30 9.39 23.38 0.22 -25.08 15 8 H 0.10 5.35 7.84 -2.91 -0.02 5.33 15 9 C 0.33 20.22 7.22 135.68 0.98 21.20 15 10 N -0.52 -32.18 9.84 -62.19 -0.61 -32.79 15 11 S -0.05 -2.81 21.88 -56.49 -1.24 -4.05 15 12 C 0.29 13.98 6.84 179.04 1.22 15.20 15 13 N -0.43 -15.41 5.24 -691.35 -3.62 -19.03 15 14 C 0.05 1.47 6.83 86.65 0.59 2.06 15 15 C -0.13 -2.57 6.60 31.77 0.21 -2.36 15 16 C 0.10 1.85 4.19 46.30 0.19 2.05 15 17 H 0.08 1.23 8.14 -2.39 -0.02 1.21 15 18 N -0.85 -13.24 9.38 -162.97 -1.53 -14.76 15 19 C 0.04 1.05 6.08 86.77 0.53 1.57 15 20 N -0.56 -30.87 10.53 -198.52 -2.09 -32.95 15 21 H 0.29 14.81 8.30 -92.71 -0.77 14.04 15 22 H 0.11 2.73 8.14 -2.38 -0.02 2.71 15 23 H 0.04 1.54 7.53 -2.39 -0.02 1.53 15 24 H 0.12 1.56 8.14 -2.39 -0.02 1.54 15 25 H 0.07 1.65 8.14 -2.38 -0.02 1.63 15 26 H 0.36 4.43 9.08 -89.70 -0.81 3.62 15 27 H 0.36 3.90 9.03 -89.69 -0.81 3.09 15 28 H 0.06 2.10 6.23 -2.39 -0.01 2.09 15 29 H 0.10 2.59 8.14 -2.39 -0.02 2.57 15 Total: -1.00 -75.10 260.64 -2.82 -77.92 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -0.43 Total: 12.45 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 4.41 Total: 16.00 kcal Atomic # 7 Polarization: -136.58 SS G_CDS: -7.60 Total: -144.18 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -1.24 Total: -4.05 kcal Total: -75.10 -2.82 -77.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082376077.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.500 kcal (2) G-P(sol) polarization free energy of solvation -75.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds