Wall clock time and date at job start Mon Mar 30 2020 04:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30647 * 1 3 3 Si 1.86803 * 119.99802 * 2 1 4 4 H 1.48496 * 109.47191 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.47055 * 120.00331 * 3 2 1 6 6 H 1.48498 * 109.47283 * 240.00407 * 3 2 1 7 7 C 1.40285 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00096 * 179.97438 * 7 2 1 9 9 C 1.40061 * 119.99824 * 359.97438 * 7 2 1 10 10 N 1.33452 * 127.92187 * 179.70650 * 9 7 2 11 11 C 1.30536 * 116.66435 * 179.77534 * 10 9 7 12 12 N 1.39074 * 120.43611 * 180.25429 * 11 10 9 13 13 C 1.47447 * 110.99730 * 60.15585 * 12 11 10 14 14 C 1.54317 * 107.23425 * 123.25871 * 13 12 11 15 15 C 1.55146 * 103.02167 * 22.28084 * 14 13 12 16 16 H 1.08998 * 110.98632 * 82.47762 * 15 14 13 17 17 N 1.46896 * 110.99309 * 206.25730 * 15 14 13 18 18 C 1.47849 * 111.00201 * 180.99737 * 12 11 10 19 19 N 1.31561 * 119.12777 * 0.55981 * 11 10 9 20 20 S 1.70056 * 105.90976 * 359.69959 * 19 11 10 21 21 H 0.97001 * 119.99897 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.88286 * 242.65832 * 13 12 11 23 23 H 1.08995 * 109.89169 * 3.68640 * 13 12 11 24 24 H 1.08995 * 110.70980 * 140.66290 * 14 13 12 25 25 H 1.09003 * 110.70370 * 263.72394 * 14 13 12 26 26 H 1.00896 * 111.00286 * 179.97438 * 17 15 14 27 27 H 1.00901 * 110.99978 * 303.95504 * 17 15 14 28 28 H 1.09002 * 110.37067 * 332.46695 * 18 12 11 29 29 H 1.08996 * 110.37418 * 94.80978 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 1.2754 2.7465 0.0006 5 1 3.0943 1.6964 1.2125 6 1 3.0941 1.6966 -1.2125 7 6 2.0080 -1.2149 -0.0005 8 1 3.0880 -1.2148 -0.0010 9 6 1.3077 -2.4278 -0.0005 10 7 1.8093 -3.6645 -0.0064 11 6 0.9485 -4.6458 -0.0004 12 7 1.3854 -5.9662 -0.0005 13 6 2.2078 -6.2506 1.1898 14 6 1.5500 -7.4358 1.9274 15 6 0.7159 -8.1214 0.8133 16 1 1.3376 -8.7856 0.2130 17 7 -0.4272 -8.8471 1.3829 18 6 0.2415 -6.9028 -0.0172 19 7 -0.3377 -4.3694 -0.0004 20 16 -0.4499 -2.6726 -0.0004 21 1 -0.4850 0.8401 0.0004 22 1 3.2197 -6.5187 0.8858 23 1 2.2354 -5.3757 1.8392 24 1 2.3076 -8.1165 2.3157 25 1 0.9056 -7.0796 2.7311 26 1 -0.9700 -9.2927 0.6585 27 1 -0.1224 -9.5186 2.0716 28 1 -0.6314 -6.4439 0.4470 29 1 0.0138 -7.2056 -1.0392 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082376082.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:20 Heat of formation + Delta-G solvation = 46.658714 kcal Electronic energy + Delta-G solvation = -14851.785222 eV Core-core repulsion = 12321.966670 eV Total energy + Delta-G solvation = -2529.818551 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -39.38938 -36.93232 -34.49202 -33.24018 -30.66952 -28.77770 -27.90368 -26.75185 -22.81784 -21.27905 -20.15180 -18.60844 -17.61029 -16.20099 -16.11791 -15.46316 -15.23238 -15.20955 -13.90486 -13.58566 -13.17700 -12.94250 -12.56498 -12.09721 -11.73053 -11.63343 -11.40412 -11.15139 -10.78722 -10.70190 -10.62526 -10.09211 -9.89451 -9.28710 -8.67694 -8.63284 -8.33424 -7.70609 -7.26602 -6.96898 -5.14916 2.37272 2.82973 2.88355 2.96503 3.39500 3.54155 3.69052 4.03180 4.36929 4.75264 4.87000 5.00840 5.10084 5.33099 5.63083 5.84193 5.99853 6.13714 6.27711 6.42004 6.50015 6.57887 6.70273 7.03930 7.25239 7.43917 7.56348 7.70222 7.89058 8.11926 8.27978 9.56288 9.73023 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.056522 B = 0.006168 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.264633 B = 4538.560863 C = 4861.002957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.056 3.944 3 Si 0.948 3.052 4 H -0.271 1.271 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.342 4.342 8 H 0.110 0.890 9 C 0.230 3.770 10 N -0.638 5.638 11 C 0.450 3.550 12 N -0.451 5.451 13 C 0.066 3.934 14 C -0.136 4.136 15 C 0.076 3.924 16 H 0.049 0.951 17 N -0.839 5.839 18 C 0.061 3.939 19 N -0.639 5.639 20 S 0.097 5.903 21 H 0.304 0.696 22 H 0.078 0.922 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.342 0.658 27 H 0.340 0.660 28 H 0.090 0.910 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.146 -5.577 2.421 6.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.172 4.172 3 Si 0.770 3.230 4 H -0.195 1.195 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.387 4.387 8 H 0.128 0.872 9 C -0.024 4.024 10 N -0.377 5.377 11 C 0.075 3.925 12 N -0.175 5.175 13 C -0.063 4.063 14 C -0.175 4.175 15 C -0.036 4.036 16 H 0.067 0.933 17 N -0.369 5.369 18 C -0.068 4.068 19 N -0.483 5.483 20 S 0.237 5.763 21 H 0.116 0.884 22 H 0.096 0.904 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.154 0.846 27 H 0.152 0.848 28 H 0.109 0.891 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.703 -5.074 2.213 5.580 hybrid contribution 1.179 -0.268 0.090 1.212 sum 1.882 -5.342 2.303 6.114 Atomic orbital electron populations 1.69120 1.07959 1.31842 1.28582 1.26369 0.95278 1.03045 0.92502 0.85669 0.79581 0.77083 0.80711 1.19539 1.18089 1.18057 1.19024 0.95982 0.86865 1.36857 0.87234 1.24967 0.92542 0.92890 0.91993 1.67576 1.34011 0.97320 1.38747 1.21309 0.85645 0.90656 0.94938 1.60284 1.19051 0.99761 1.38364 1.22606 0.97043 0.97165 0.89461 1.22861 0.98902 0.97523 0.98173 1.22494 0.90908 0.95013 0.95174 0.93308 1.58546 1.24187 1.34919 1.19244 1.22913 0.93942 0.90225 0.99706 1.77378 1.17612 1.09313 1.43947 1.85697 1.14046 0.99167 1.77414 0.88368 0.90369 0.91670 0.91118 0.90528 0.84575 0.84797 0.89140 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.50 10.96 55.57 0.61 -16.89 15 2 C 0.06 1.25 5.50 -17.29 -0.10 1.15 15 3 Si 0.95 16.35 29.56 -169.99 -5.03 11.32 15 4 H -0.27 -4.49 7.11 56.52 0.40 -4.09 15 5 H -0.26 -4.36 7.11 56.52 0.40 -3.96 15 6 H -0.26 -4.38 7.11 56.52 0.40 -3.97 15 7 C -0.34 -8.58 9.46 -38.13 -0.36 -8.94 15 8 H 0.11 2.57 7.85 -52.48 -0.41 2.16 15 9 C 0.23 6.38 7.46 -16.16 -0.12 6.26 15 10 N -0.64 -17.80 10.27 -14.48 -0.15 -17.95 15 11 C 0.45 11.99 6.71 -325.50 -2.19 9.81 15 12 N -0.45 -10.07 5.26 -175.11 -0.92 -11.00 15 13 C 0.07 1.25 6.69 -2.83 -0.02 1.23 15 14 C -0.14 -2.06 6.60 -24.91 -0.16 -2.22 15 15 C 0.08 1.13 4.19 -65.57 -0.27 0.86 15 16 H 0.05 0.67 8.14 -51.93 -0.42 0.24 15 17 N -0.84 -10.55 9.38 -2.86 -0.03 -10.58 15 18 C 0.06 1.19 6.08 -2.29 -0.01 1.17 15 19 N -0.64 -17.58 10.11 27.87 0.28 -17.30 15 20 S 0.10 2.66 21.37 -107.50 -2.30 0.36 15 21 H 0.30 6.26 8.29 -40.82 -0.34 5.92 15 22 H 0.08 1.35 8.14 -51.93 -0.42 0.93 15 23 H 0.06 1.38 7.41 -51.93 -0.38 1.00 15 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 25 H 0.08 1.25 8.14 -51.93 -0.42 0.82 15 26 H 0.34 3.72 9.08 -39.29 -0.36 3.37 15 27 H 0.34 3.43 9.03 -39.29 -0.35 3.08 15 28 H 0.09 2.03 6.60 -51.93 -0.34 1.69 15 29 H 0.07 1.34 8.14 -51.93 -0.42 0.92 15 LS Contribution 259.92 15.07 3.92 3.92 Total: -1.00 -30.33 259.92 -9.94 -40.27 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -3.10 Total: 8.54 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -3.23 Total: 9.31 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -0.21 Total: -73.72 kcal Atomic # 14 Polarization: 16.35 SS G_CDS: -5.03 Total: 11.32 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.30 Total: 0.36 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.33 -9.94 -40.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082376082.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.929 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds