Wall clock time and date at job start Mon Mar 30 2020 03:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31007 * 1 3 3 Si 1.86808 * 119.99642 * 2 1 4 4 H 1.48502 * 109.46781 * 269.99522 * 3 2 1 5 5 H 1.48495 * 109.47437 * 29.99439 * 3 2 1 6 6 H 1.48496 * 109.47000 * 150.00045 * 3 2 1 7 7 C 1.39901 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99548 * 186.55082 * 7 2 1 9 9 C 1.39912 * 120.00085 * 6.55558 * 7 2 1 10 10 C 1.38453 * 126.07479 * 173.63858 * 9 7 2 11 11 N 1.30458 * 114.86575 * 180.02562 * 10 9 7 12 12 C 1.30656 * 117.50883 * 359.97438 * 11 10 9 13 13 N 1.37604 * 125.12767 * 179.97438 * 12 11 10 14 14 C 1.47020 * 110.99683 * 236.34348 * 13 12 11 15 15 C 1.53101 * 109.25757 * 182.35196 * 14 13 12 16 16 O 1.43008 * 109.29181 * 303.21834 * 15 14 13 17 17 C 1.43021 * 113.74072 * 58.64612 * 16 15 14 18 18 C 1.47017 * 111.00168 * 0.02562 * 13 12 11 19 19 S 1.76073 * 109.73859 * 0.22971 * 12 11 10 20 20 H 0.97000 * 119.99949 * 0.02562 * 1 2 3 21 21 H 1.08003 * 122.57088 * 359.97438 * 10 9 7 22 22 H 1.08995 * 109.47187 * 62.43888 * 14 13 12 23 23 H 1.09005 * 109.54428 * 302.30874 * 14 13 12 24 24 H 1.08996 * 109.50675 * 183.25745 * 15 14 13 25 25 H 1.09010 * 109.50357 * 63.17011 * 15 14 13 26 26 H 1.08998 * 109.50574 * 61.26603 * 17 16 15 27 27 H 1.09006 * 109.50681 * 181.34830 * 17 16 15 28 28 H 1.09000 * 109.50661 * 57.67521 * 18 13 12 29 29 H 1.08996 * 109.50636 * 297.54182 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2440 1.6179 0.0000 4 1 2.4915 2.0464 -1.4001 5 1 1.4414 2.6528 0.6999 6 1 3.5415 1.4404 0.7000 7 6 2.0096 -1.2116 0.0005 8 1 3.0844 -1.2145 0.1073 9 6 1.3169 -2.4194 -0.1373 10 6 1.8856 -3.6740 -0.2770 11 7 1.0317 -4.6538 -0.3901 12 6 -0.2394 -4.3531 -0.3595 13 7 -1.2700 -5.2587 -0.4652 14 6 -2.1654 -4.9103 -1.5780 15 6 -3.3267 -5.9070 -1.6227 16 8 -2.8064 -7.2338 -1.7405 17 6 -1.9313 -7.6060 -0.6722 18 6 -0.7552 -6.6273 -0.6185 19 16 -0.4345 -2.6135 -0.1701 20 1 -0.4850 0.8401 -0.0004 21 1 2.9543 -3.8295 -0.2921 22 1 -1.6125 -4.9533 -2.5163 23 1 -2.5556 -3.9032 -1.4305 24 1 -3.9618 -5.6875 -2.4809 25 1 -3.9118 -5.8254 -0.7066 26 1 -2.4751 -7.5737 0.2718 27 1 -1.5578 -8.6158 -0.8427 28 1 -0.1159 -6.8727 0.2295 29 1 -0.1800 -6.6985 -1.5415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082419315.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:34 Heat of formation + Delta-G solvation = -15.389777 kcal Electronic energy + Delta-G solvation = -14924.223638 eV Core-core repulsion = 12359.421711 eV Total energy + Delta-G solvation = -2564.801927 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.27908 -37.26399 -35.03849 -33.90522 -30.85184 -29.43296 -27.26082 -24.49730 -23.59170 -22.31109 -20.28706 -18.62116 -18.00621 -16.25774 -15.89536 -15.42996 -15.01595 -14.69212 -14.39802 -13.95738 -13.86794 -12.90232 -12.40128 -12.35508 -11.95153 -11.78691 -11.50745 -11.15697 -11.05386 -10.95261 -10.56510 -10.36693 -9.90707 -9.50382 -9.34179 -8.67899 -7.98021 -7.66582 -7.11814 -6.87950 -4.55881 2.39795 2.85847 2.91799 2.97723 3.13596 3.58756 3.82050 4.06518 4.13494 4.69800 5.03568 5.25147 5.40676 5.45526 5.59203 5.66186 5.87922 5.93332 6.14106 6.32964 6.40725 6.52646 6.70261 7.10727 7.33055 7.42804 7.51339 7.79099 8.02344 8.30552 8.46716 9.66316 9.71080 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.057824 B = 0.006374 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.114461 B = 4391.556705 C = 4770.863284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.049 3.951 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.373 4.373 8 H 0.099 0.901 9 C 0.000 4.000 10 C -0.167 4.167 11 N -0.458 5.458 12 C 0.007 3.993 13 N -0.429 5.429 14 C 0.017 3.983 15 C 0.067 3.933 16 O -0.391 6.391 17 C 0.063 3.937 18 C 0.038 3.962 19 S 0.119 5.881 20 H 0.298 0.702 21 H 0.135 0.865 22 H 0.042 0.958 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.230 -2.686 -1.226 5.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.172 4.172 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.410 4.410 8 H 0.117 0.883 9 C -0.124 4.124 10 C -0.321 4.321 11 N -0.174 5.174 12 C -0.352 4.352 13 N -0.152 5.152 14 C -0.111 4.111 15 C -0.010 4.010 16 O -0.310 6.310 17 C -0.014 4.014 18 C -0.093 4.093 19 S 0.367 5.633 20 H 0.111 0.889 21 H 0.153 0.847 22 H 0.060 0.940 23 H 0.104 0.896 24 H 0.113 0.887 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.552 -2.631 -0.943 6.216 hybrid contribution 1.900 0.830 -0.419 2.115 sum -3.652 -1.801 -1.361 4.293 Atomic orbital electron populations 1.68970 1.07641 1.30791 1.33076 1.26233 0.95194 1.02811 0.92976 0.85755 0.80014 0.78386 0.79659 1.18911 1.19706 1.18104 1.19112 0.95936 0.88643 1.37259 0.88301 1.23086 0.93998 0.97141 0.98180 1.21026 0.97620 0.86640 1.26767 1.65632 1.00858 1.37271 1.13652 1.25048 0.89892 0.96898 1.23410 1.59407 1.15890 1.00697 1.39204 1.22948 0.94988 0.99943 0.93219 1.22651 0.94741 0.81730 1.01898 1.87912 1.64299 1.31107 1.47676 1.22752 0.90564 0.97816 0.90296 1.22489 0.96175 0.88245 1.02363 1.84967 1.06443 0.97078 1.74798 0.88932 0.84741 0.93998 0.89592 0.88741 0.92430 0.92633 0.88839 0.89544 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.49 10.77 55.55 0.60 -17.89 15 2 C 0.05 1.13 5.49 -17.28 -0.09 1.03 15 3 Si 0.94 17.12 29.57 -169.99 -5.03 12.10 15 4 H -0.26 -4.78 7.11 56.52 0.40 -4.38 15 5 H -0.27 -4.83 7.11 56.52 0.40 -4.43 15 6 H -0.26 -4.62 7.11 56.52 0.40 -4.22 15 7 C -0.37 -9.32 9.30 -38.33 -0.36 -9.68 15 8 H 0.10 2.31 7.85 -52.48 -0.41 1.90 15 9 C 0.00 -0.01 6.23 -38.88 -0.24 -0.25 15 10 C -0.17 -4.41 11.35 -18.06 -0.20 -4.61 15 11 N -0.46 -12.04 9.44 -13.12 -0.12 -12.16 15 12 C 0.01 0.18 6.90 -87.86 -0.61 -0.42 15 13 N -0.43 -9.13 4.77 -173.51 -0.83 -9.96 15 14 C 0.02 0.32 5.49 -3.71 -0.02 0.30 15 15 C 0.07 1.01 7.01 37.21 0.26 1.27 15 16 O -0.39 -6.39 10.83 -35.23 -0.38 -6.77 15 17 C 0.06 0.96 7.01 37.21 0.26 1.22 15 18 C 0.04 0.72 4.96 -3.71 -0.02 0.70 15 19 S 0.12 2.99 19.69 -107.50 -2.12 0.87 15 20 H 0.30 6.34 8.30 -40.82 -0.34 6.00 15 21 H 0.14 3.34 8.06 -52.48 -0.42 2.91 15 22 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.09 1.58 7.50 -51.93 -0.39 1.19 15 24 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 25 H 0.06 0.82 8.14 -51.92 -0.42 0.40 15 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 27 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 28 H 0.09 1.70 8.00 -51.93 -0.42 1.28 15 29 H 0.05 0.93 8.13 -51.93 -0.42 0.51 15 LS Contribution 258.67 15.07 3.90 3.90 Total: -1.00 -28.59 258.67 -8.31 -36.90 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -3.31 Total: 3.45 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -1.02 Total: -10.44 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: -0.35 Total: -40.01 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.38 Total: -6.77 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.10 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -2.12 Total: 0.87 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.59 -8.31 -36.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082419315.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.513 kcal (2) G-P(sol) polarization free energy of solvation -28.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds