Wall clock time and date at job start Mon Mar 30 2020 03:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31007 * 1 3 3 Si 1.86808 * 119.99642 * 2 1 4 4 H 1.48502 * 109.46781 * 269.99522 * 3 2 1 5 5 H 1.48495 * 109.47437 * 29.99439 * 3 2 1 6 6 H 1.48496 * 109.47000 * 150.00045 * 3 2 1 7 7 C 1.39901 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99548 * 186.55082 * 7 2 1 9 9 C 1.39912 * 120.00085 * 6.55558 * 7 2 1 10 10 C 1.38453 * 126.07479 * 173.63858 * 9 7 2 11 11 N 1.30458 * 114.86575 * 180.02562 * 10 9 7 12 12 C 1.30656 * 117.50883 * 359.97438 * 11 10 9 13 13 N 1.37604 * 125.12767 * 179.97438 * 12 11 10 14 14 C 1.47020 * 110.99683 * 236.34348 * 13 12 11 15 15 C 1.53101 * 109.25757 * 182.35196 * 14 13 12 16 16 O 1.43008 * 109.29181 * 303.21834 * 15 14 13 17 17 C 1.43021 * 113.74072 * 58.64612 * 16 15 14 18 18 C 1.47017 * 111.00168 * 0.02562 * 13 12 11 19 19 S 1.76073 * 109.73859 * 0.22971 * 12 11 10 20 20 H 0.97000 * 119.99949 * 0.02562 * 1 2 3 21 21 H 1.08003 * 122.57088 * 359.97438 * 10 9 7 22 22 H 1.08995 * 109.47187 * 62.43888 * 14 13 12 23 23 H 1.09005 * 109.54428 * 302.30874 * 14 13 12 24 24 H 1.08996 * 109.50675 * 183.25745 * 15 14 13 25 25 H 1.09010 * 109.50357 * 63.17011 * 15 14 13 26 26 H 1.08998 * 109.50574 * 61.26603 * 17 16 15 27 27 H 1.09006 * 109.50681 * 181.34830 * 17 16 15 28 28 H 1.09000 * 109.50661 * 57.67521 * 18 13 12 29 29 H 1.08996 * 109.50636 * 297.54182 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2440 1.6179 0.0000 4 1 2.4915 2.0464 -1.4001 5 1 1.4414 2.6528 0.6999 6 1 3.5415 1.4404 0.7000 7 6 2.0096 -1.2116 0.0005 8 1 3.0844 -1.2145 0.1073 9 6 1.3169 -2.4194 -0.1373 10 6 1.8856 -3.6740 -0.2770 11 7 1.0317 -4.6538 -0.3901 12 6 -0.2394 -4.3531 -0.3595 13 7 -1.2700 -5.2587 -0.4652 14 6 -2.1654 -4.9103 -1.5780 15 6 -3.3267 -5.9070 -1.6227 16 8 -2.8064 -7.2338 -1.7405 17 6 -1.9313 -7.6060 -0.6722 18 6 -0.7552 -6.6273 -0.6185 19 16 -0.4345 -2.6135 -0.1701 20 1 -0.4850 0.8401 -0.0004 21 1 2.9543 -3.8295 -0.2921 22 1 -1.6125 -4.9533 -2.5163 23 1 -2.5556 -3.9032 -1.4305 24 1 -3.9618 -5.6875 -2.4809 25 1 -3.9118 -5.8254 -0.7066 26 1 -2.4751 -7.5737 0.2718 27 1 -1.5578 -8.6158 -0.8427 28 1 -0.1159 -6.8727 0.2295 29 1 -0.1800 -6.6985 -1.5415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082419315.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:34 Heat of formation + Delta-G solvation = -34.469316 kcal Electronic energy + Delta-G solvation = -14925.050989 eV Core-core repulsion = 12359.421711 eV Total energy + Delta-G solvation = -2565.629278 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -40.77729 -39.05318 -36.69633 -35.67060 -32.21884 -31.31651 -28.83467 -26.30633 -25.01747 -24.12689 -21.80124 -20.45819 -19.81742 -17.96033 -17.52960 -16.90301 -16.55829 -16.05365 -15.93256 -15.59510 -15.41739 -14.65304 -14.19484 -14.16284 -13.66773 -13.27441 -13.10652 -12.90965 -12.48949 -12.33806 -12.03281 -11.70960 -11.55713 -11.36865 -10.89964 -10.36300 -9.93100 -9.61394 -8.93125 -8.79572 -6.48953 0.54905 1.21438 1.36107 1.48767 1.54455 1.77584 2.12647 2.25670 2.86404 2.98729 3.18538 3.87569 4.04525 4.15257 4.19561 4.34510 4.45475 4.59056 4.69606 4.83287 4.89242 4.96255 5.00022 5.16644 5.52883 5.80056 5.93974 6.12877 6.13543 6.42054 6.57272 7.69490 7.95359 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.057824 B = 0.006374 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.114461 B = 4391.556705 C = 4770.863284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.013 3.987 3 Si 1.016 2.984 4 H -0.258 1.258 5 H -0.260 1.260 6 H -0.252 1.252 7 C -0.395 4.395 8 H 0.108 0.892 9 C -0.027 4.027 10 C -0.202 4.202 11 N -0.477 5.477 12 C 0.009 3.991 13 N -0.437 5.437 14 C 0.018 3.982 15 C 0.073 3.927 16 O -0.398 6.398 17 C 0.071 3.929 18 C 0.040 3.960 19 S 0.107 5.893 20 H 0.311 0.689 21 H 0.138 0.862 22 H 0.024 0.976 23 H 0.084 0.916 24 H 0.127 0.873 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.124 0.876 28 H 0.075 0.925 29 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.136 -1.953 -1.273 5.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.206 4.206 3 Si 0.834 3.166 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.175 1.175 7 C -0.431 4.431 8 H 0.126 0.874 9 C -0.151 4.151 10 C -0.354 4.354 11 N -0.193 5.193 12 C -0.352 4.352 13 N -0.160 5.160 14 C -0.110 4.110 15 C -0.004 4.004 16 O -0.317 6.317 17 C -0.005 4.005 18 C -0.090 4.090 19 S 0.356 5.644 20 H 0.124 0.876 21 H 0.156 0.844 22 H 0.043 0.957 23 H 0.102 0.898 24 H 0.145 0.855 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.141 0.859 28 H 0.093 0.907 29 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -6.467 -1.927 -0.991 6.821 hybrid contribution 2.119 0.623 -0.395 2.244 sum -4.349 -1.304 -1.386 4.747 Atomic orbital electron populations 1.68979 1.09097 1.32623 1.31741 1.27285 0.95968 1.05938 0.91444 0.84635 0.78690 0.73291 0.79950 1.18277 1.18361 1.17504 1.19542 0.96712 0.89223 1.37600 0.87416 1.23422 0.94800 0.97871 0.98963 1.21157 0.98032 0.87097 1.29091 1.65642 1.01506 1.37471 1.14715 1.25476 0.90284 0.97453 1.22002 1.59408 1.14957 1.01094 1.40553 1.23038 0.95417 1.01318 0.91248 1.22780 0.93287 0.80132 1.04178 1.87916 1.64171 1.31421 1.48143 1.22819 0.88972 0.97843 0.90910 1.22547 0.97779 0.87989 1.00709 1.84742 1.06129 0.97859 1.75698 0.87585 0.84441 0.95734 0.89801 0.85549 0.90992 0.91200 0.85859 0.90700 0.95823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.42 10.77 21.83 0.24 -37.19 15 2 C 0.01 0.57 5.49 85.22 0.47 1.04 15 3 Si 1.02 33.52 29.57 68.60 2.03 35.55 15 4 H -0.26 -8.29 7.11 99.48 0.71 -7.58 15 5 H -0.26 -8.01 7.11 99.48 0.71 -7.31 15 6 H -0.25 -8.04 7.11 99.48 0.71 -7.34 15 7 C -0.39 -19.90 9.30 23.08 0.21 -19.69 15 8 H 0.11 5.07 7.85 -2.91 -0.02 5.04 15 9 C -0.03 -1.48 6.23 22.73 0.14 -1.34 15 10 C -0.20 -11.09 11.35 84.95 0.96 -10.13 15 11 N -0.48 -25.92 9.44 -195.41 -1.84 -27.77 15 12 C 0.01 0.46 6.90 179.38 1.24 1.70 15 13 N -0.44 -18.62 4.77 -702.86 -3.35 -21.97 15 14 C 0.02 0.65 5.49 86.31 0.47 1.13 15 15 C 0.07 2.01 7.01 72.02 0.50 2.52 15 16 O -0.40 -11.93 10.83 -148.98 -1.61 -13.54 15 17 C 0.07 2.02 7.01 72.01 0.50 2.53 15 18 C 0.04 1.52 4.96 86.31 0.43 1.95 15 19 S 0.11 5.53 19.69 -56.49 -1.11 4.42 15 20 H 0.31 12.81 8.30 -92.71 -0.77 12.05 15 21 H 0.14 7.16 8.06 -2.91 -0.02 7.14 15 22 H 0.02 0.97 8.14 -2.39 -0.02 0.95 15 23 H 0.08 3.06 7.50 -2.38 -0.02 3.04 15 24 H 0.13 2.70 8.14 -2.39 -0.02 2.68 15 25 H 0.07 1.82 8.14 -2.38 -0.02 1.80 15 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 15 27 H 0.12 2.77 8.14 -2.38 -0.02 2.75 15 28 H 0.07 2.97 8.00 -2.39 -0.02 2.95 15 29 H 0.02 0.98 8.13 -2.39 -0.02 0.96 15 Total: -1.00 -62.30 258.67 0.43 -61.87 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 1.15 Total: 18.93 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 4.94 Total: -20.29 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -4.96 Total: -86.93 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -1.61 Total: -13.54 kcal Atomic # 14 Polarization: 33.52 SS G_CDS: 2.03 Total: 35.55 kcal Atomic # 16 Polarization: 5.53 SS G_CDS: -1.11 Total: 4.42 kcal Total: -62.30 0.43 -61.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082419315.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.396 kcal (2) G-P(sol) polarization free energy of solvation -62.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds