Wall clock time and date at job start Mon Mar 30 2020 03:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47293 * 2 1 4 4 C 1.50699 * 109.47431 * 239.99586 * 2 1 3 5 5 H 1.07997 * 120.00180 * 245.63225 * 4 2 1 6 6 C 1.37875 * 119.99725 * 65.62893 * 4 2 1 7 7 N 1.31514 * 120.00338 * 197.03970 * 6 4 2 8 8 Si 1.86809 * 119.99889 * 17.04323 * 6 4 2 9 9 H 1.48502 * 109.46948 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47016 * 299.99402 * 8 6 4 11 11 H 1.48498 * 109.47127 * 59.99745 * 8 6 4 12 12 S 1.81409 * 109.47042 * 119.99864 * 2 1 3 13 13 O 1.42088 * 110.54306 * 56.62275 * 12 2 1 14 14 O 1.42099 * 110.54070 * 193.37833 * 12 2 1 15 15 C 1.76198 * 104.44642 * 304.99974 * 12 2 1 16 16 C 1.38237 * 120.00494 * 269.72570 * 15 12 2 17 17 C 1.38230 * 120.00373 * 179.76756 * 16 15 12 18 18 C 1.38228 * 120.00045 * 0.51012 * 17 16 15 19 19 C 1.38236 * 120.00109 * 359.74434 * 18 17 16 20 20 C 1.38238 * 119.99950 * 90.00291 * 15 12 2 21 21 H 1.08994 * 109.47526 * 66.67968 * 1 2 3 22 22 H 1.09004 * 109.47261 * 186.67651 * 1 2 3 23 23 H 1.09000 * 109.47416 * 306.67454 * 1 2 3 24 24 H 0.97002 * 119.99353 * 355.96107 * 7 6 4 25 25 H 1.08009 * 119.99435 * 0.02562 * 16 15 12 26 26 H 1.08000 * 119.99814 * 180.22613 * 17 16 15 27 27 H 1.08001 * 120.00511 * 179.72145 * 18 17 16 28 28 H 1.08002 * 120.00559 * 179.97438 * 19 18 17 29 29 H 1.07994 * 120.00297 * 359.97438 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5762 -1.6385 -1.1338 6 6 1.7977 -0.1757 -2.4793 7 7 1.9253 -0.9272 -3.5511 8 14 1.2984 1.6164 -2.6492 9 1 1.1075 1.9430 -4.0852 10 1 0.0284 1.8481 -1.9154 11 1 2.3629 2.4827 -2.0823 12 16 2.1346 -0.8551 1.4812 13 8 1.6107 -2.1744 1.5441 14 8 3.5213 -0.6078 1.6686 15 6 1.3585 -0.0150 2.8215 16 6 1.9811 1.0692 3.4112 17 6 1.3699 1.7313 4.4595 18 6 0.1410 1.3027 4.9251 19 6 -0.4793 0.2153 4.3389 20 6 0.1294 -0.4436 3.2870 21 1 -0.3634 0.4068 -0.9436 22 1 -0.3634 -1.0207 0.1195 23 1 -0.3634 0.6138 0.8242 24 1 2.2410 -1.8406 -3.4680 25 1 2.9432 1.4015 3.0501 26 1 1.8548 2.5806 4.9178 27 1 -0.3345 1.8172 5.7471 28 1 -1.4394 -0.1198 4.7028 29 1 -0.3552 -1.2931 2.8290 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082787336.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:29 Heat of formation + Delta-G solvation = -52.740026 kcal Electronic energy + Delta-G solvation = -15250.741411 eV Core-core repulsion = 12652.027104 eV Total energy + Delta-G solvation = -2598.714306 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.95888 -36.29214 -35.09922 -34.36782 -31.55655 -30.95492 -30.88266 -25.16890 -23.04661 -22.60282 -21.73293 -18.56625 -17.80274 -17.27196 -15.92985 -15.60713 -15.27652 -14.41812 -14.34004 -13.83098 -13.45799 -13.40275 -12.74294 -12.63991 -12.26632 -11.99006 -11.68491 -11.29544 -11.25568 -11.07500 -10.80278 -10.50272 -10.27468 -10.03055 -9.50635 -9.28429 -9.08671 -8.95184 -8.55199 -6.75792 -4.45350 0.83436 1.11532 1.37411 3.22537 3.29199 3.45977 3.57508 3.80354 4.28366 4.69292 4.70782 4.90649 4.91653 5.03293 5.14873 5.40864 5.57204 5.76224 5.89958 5.96535 6.04946 6.14578 6.28013 6.30186 6.38621 6.56269 6.91752 6.94357 7.34139 8.04313 8.50545 9.25414 10.65459 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.032268 B = 0.008967 C = 0.008244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.515185 B = 3121.663410 C = 3395.602938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.401 4.401 3 H 0.087 0.913 4 C -0.608 4.608 5 H 0.071 0.929 6 C 0.053 3.947 7 N -0.882 5.882 8 Si 1.042 2.958 9 H -0.279 1.279 10 H -0.269 1.269 11 H -0.277 1.277 12 S 2.479 3.521 13 O -0.953 6.953 14 O -0.959 6.959 15 C -0.650 4.650 16 C -0.028 4.028 17 C -0.145 4.145 18 C -0.079 4.079 19 C -0.146 4.146 20 C -0.023 4.023 21 H 0.078 0.922 22 H 0.065 0.935 23 H 0.040 0.960 24 H 0.275 0.725 25 H 0.140 0.860 26 H 0.128 0.872 27 H 0.125 0.875 28 H 0.128 0.872 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.151 6.579 13.232 15.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.516 4.516 3 H 0.105 0.895 4 C -0.647 4.647 5 H 0.089 0.911 6 C -0.157 4.157 7 N -0.513 5.513 8 Si 0.869 3.131 9 H -0.205 1.205 10 H -0.195 1.195 11 H -0.203 1.203 12 S 2.662 3.338 13 O -0.951 6.951 14 O -0.957 6.957 15 C -0.734 4.734 16 C -0.047 4.047 17 C -0.164 4.164 18 C -0.097 4.097 19 C -0.164 4.164 20 C -0.041 4.041 21 H 0.096 0.904 22 H 0.084 0.916 23 H 0.059 0.941 24 H 0.086 0.914 25 H 0.157 0.843 26 H 0.146 0.854 27 H 0.143 0.857 28 H 0.146 0.854 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.017 7.005 12.274 14.996 hybrid contribution -0.023 -0.530 1.324 1.426 sum -5.040 6.475 13.598 15.882 Atomic orbital electron populations 1.22131 0.94086 1.02089 1.02534 1.27556 1.02653 1.08490 1.12940 0.89485 1.21256 1.43422 1.10470 0.89559 0.91090 1.25807 0.93460 1.05264 0.91147 1.70846 1.39332 1.10136 1.31035 0.84069 0.77498 0.74725 0.76819 1.20473 1.19542 1.20267 1.06411 0.74892 0.76172 0.76330 1.93448 1.80545 1.34469 1.86601 1.93451 1.30321 1.86173 1.85706 1.31202 1.08201 1.11860 1.22129 1.21015 0.98447 0.91657 0.93542 1.21254 0.96197 1.00841 0.98106 1.21376 0.94779 0.95483 0.98051 1.21271 1.00609 0.96994 0.97552 1.21013 0.92132 0.97018 0.93985 0.90350 0.91635 0.94065 0.91437 0.84272 0.85434 0.85750 0.85424 0.84221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.37 37.16 0.31 -2.66 15 2 C -0.40 -8.97 2.44 -27.88 -0.07 -9.04 15 3 H 0.09 1.80 6.80 -51.92 -0.35 1.44 15 4 C -0.61 -16.48 8.84 -34.44 -0.30 -16.78 15 5 H 0.07 2.07 7.96 -52.49 -0.42 1.65 15 6 C 0.05 1.45 5.30 -17.82 -0.09 1.36 15 7 N -0.88 -25.78 13.70 55.43 0.76 -25.02 15 8 Si 1.04 23.35 26.28 -169.99 -4.47 18.88 15 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 10 H -0.27 -5.39 5.74 56.52 0.32 -5.07 15 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 12 S 2.48 53.23 4.59 -107.50 -0.49 52.73 15 13 O -0.95 -22.53 17.02 -57.54 -0.98 -23.51 15 14 O -0.96 -22.65 17.12 -57.54 -0.98 -23.64 15 15 C -0.65 -11.31 4.92 -39.58 -0.19 -11.50 15 16 C -0.03 -0.43 9.47 -39.58 -0.37 -0.81 15 17 C -0.15 -1.80 10.05 -39.59 -0.40 -2.20 15 18 C -0.08 -0.90 10.05 -39.59 -0.40 -1.30 15 19 C -0.15 -1.81 10.05 -39.58 -0.40 -2.21 15 20 C -0.02 -0.35 8.67 -39.58 -0.34 -0.70 15 21 H 0.08 1.60 4.84 -51.93 -0.25 1.35 15 22 H 0.06 1.28 8.04 -51.93 -0.42 0.86 15 23 H 0.04 0.67 7.08 -51.93 -0.37 0.30 15 24 H 0.28 8.02 8.73 -40.82 -0.36 7.67 15 25 H 0.14 2.03 7.57 -52.48 -0.40 1.63 15 26 H 0.13 1.20 8.06 -52.49 -0.42 0.77 15 27 H 0.12 1.01 8.06 -52.49 -0.42 0.58 15 28 H 0.13 1.21 8.06 -52.49 -0.42 0.78 15 29 H 0.14 2.06 7.57 -52.49 -0.40 1.67 15 LS Contribution 259.58 15.07 3.91 3.91 Total: -1.00 -32.58 259.58 -7.62 -40.20 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -3.10 Total: 2.29 kcal Atomic # 6 Polarization: -43.58 SS G_CDS: -2.26 Total: -45.84 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.76 Total: -25.02 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -1.96 Total: -47.15 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -4.47 Total: 18.88 kcal Atomic # 16 Polarization: 53.23 SS G_CDS: -0.49 Total: 52.73 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.58 -7.62 -40.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787336.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.544 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds