Wall clock time and date at job start Mon Mar 30 2020 03:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47293 * 2 1 4 4 C 1.50699 * 109.47431 * 239.99586 * 2 1 3 5 5 H 1.07997 * 120.00180 * 245.63225 * 4 2 1 6 6 C 1.37875 * 119.99725 * 65.62893 * 4 2 1 7 7 N 1.31514 * 120.00338 * 197.03970 * 6 4 2 8 8 Si 1.86809 * 119.99889 * 17.04323 * 6 4 2 9 9 H 1.48502 * 109.46948 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47016 * 299.99402 * 8 6 4 11 11 H 1.48498 * 109.47127 * 59.99745 * 8 6 4 12 12 S 1.81409 * 109.47042 * 119.99864 * 2 1 3 13 13 O 1.42088 * 110.54306 * 56.62275 * 12 2 1 14 14 O 1.42099 * 110.54070 * 193.37833 * 12 2 1 15 15 C 1.76198 * 104.44642 * 304.99974 * 12 2 1 16 16 C 1.38237 * 120.00494 * 269.72570 * 15 12 2 17 17 C 1.38230 * 120.00373 * 179.76756 * 16 15 12 18 18 C 1.38228 * 120.00045 * 0.51012 * 17 16 15 19 19 C 1.38236 * 120.00109 * 359.74434 * 18 17 16 20 20 C 1.38238 * 119.99950 * 90.00291 * 15 12 2 21 21 H 1.08994 * 109.47526 * 66.67968 * 1 2 3 22 22 H 1.09004 * 109.47261 * 186.67651 * 1 2 3 23 23 H 1.09000 * 109.47416 * 306.67454 * 1 2 3 24 24 H 0.97002 * 119.99353 * 355.96107 * 7 6 4 25 25 H 1.08009 * 119.99435 * 0.02562 * 16 15 12 26 26 H 1.08000 * 119.99814 * 180.22613 * 17 16 15 27 27 H 1.08001 * 120.00511 * 179.72145 * 18 17 16 28 28 H 1.08002 * 120.00559 * 179.97438 * 19 18 17 29 29 H 1.07994 * 120.00297 * 359.97438 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5762 -1.6385 -1.1338 6 6 1.7977 -0.1757 -2.4793 7 7 1.9253 -0.9272 -3.5511 8 14 1.2984 1.6164 -2.6492 9 1 1.1075 1.9430 -4.0852 10 1 0.0284 1.8481 -1.9154 11 1 2.3629 2.4827 -2.0823 12 16 2.1346 -0.8551 1.4812 13 8 1.6107 -2.1744 1.5441 14 8 3.5213 -0.6078 1.6686 15 6 1.3585 -0.0150 2.8215 16 6 1.9811 1.0692 3.4112 17 6 1.3699 1.7313 4.4595 18 6 0.1410 1.3027 4.9251 19 6 -0.4793 0.2153 4.3389 20 6 0.1294 -0.4436 3.2870 21 1 -0.3634 0.4068 -0.9436 22 1 -0.3634 -1.0207 0.1195 23 1 -0.3634 0.6138 0.8242 24 1 2.2410 -1.8406 -3.4680 25 1 2.9432 1.4015 3.0501 26 1 1.8548 2.5806 4.9178 27 1 -0.3345 1.8172 5.7471 28 1 -1.4394 -0.1198 4.7028 29 1 -0.3552 -1.2931 2.8290 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082787336.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:28 Heat of formation + Delta-G solvation = -76.822282 kcal Electronic energy + Delta-G solvation = -15251.785696 eV Core-core repulsion = 12652.027104 eV Total energy + Delta-G solvation = -2599.758591 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.00342 -38.07716 -36.88791 -36.28916 -33.36897 -32.14709 -31.94612 -27.05235 -24.26275 -23.67937 -23.47799 -20.15307 -19.71411 -18.71948 -17.58021 -16.87713 -16.75678 -15.72181 -15.62362 -15.45459 -15.15946 -14.56379 -14.43781 -14.00246 -13.89492 -13.49197 -13.12348 -13.08682 -13.00460 -12.51520 -12.21232 -12.15355 -11.77270 -11.67412 -11.33038 -11.04014 -10.59624 -10.28985 -9.97904 -8.94325 -6.65059 -0.72422 -0.10254 0.35781 1.44677 1.53348 1.72012 2.19708 2.43440 2.55371 2.88275 3.05487 3.30832 3.88868 4.02909 4.15198 4.19260 4.26680 4.45934 4.54209 4.60939 4.74322 4.90639 5.02812 5.19454 5.27988 5.32697 5.41840 5.44850 5.80905 5.93882 6.26244 7.15615 8.45308 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.032268 B = 0.008967 C = 0.008244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.515185 B = 3121.663410 C = 3395.602938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.414 4.414 3 H 0.111 0.889 4 C -0.623 4.623 5 H 0.026 0.974 6 C 0.003 3.997 7 N -0.916 5.916 8 Si 1.074 2.926 9 H -0.284 1.284 10 H -0.224 1.224 11 H -0.255 1.255 12 S 2.480 3.520 13 O -0.990 6.990 14 O -0.994 6.994 15 C -0.659 4.659 16 C -0.048 4.048 17 C -0.139 4.139 18 C -0.062 4.062 19 C -0.139 4.139 20 C -0.043 4.043 21 H 0.075 0.925 22 H 0.058 0.942 23 H 0.084 0.916 24 H 0.257 0.743 25 H 0.137 0.863 26 H 0.163 0.837 27 H 0.171 0.829 28 H 0.163 0.837 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.403 9.895 16.454 20.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.529 4.529 3 H 0.129 0.871 4 C -0.661 4.661 5 H 0.044 0.956 6 C -0.199 4.199 7 N -0.549 5.549 8 Si 0.892 3.108 9 H -0.210 1.210 10 H -0.147 1.147 11 H -0.180 1.180 12 S 2.670 3.330 13 O -0.987 6.987 14 O -0.992 6.992 15 C -0.749 4.749 16 C -0.067 4.067 17 C -0.157 4.157 18 C -0.080 4.080 19 C -0.158 4.158 20 C -0.062 4.062 21 H 0.094 0.906 22 H 0.077 0.923 23 H 0.103 0.897 24 H 0.066 0.934 25 H 0.155 0.845 26 H 0.181 0.819 27 H 0.188 0.812 28 H 0.180 0.820 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.238 10.266 15.457 19.917 hybrid contribution 0.670 -1.582 0.527 1.797 sum -6.568 8.684 15.983 19.340 Atomic orbital electron populations 1.22082 0.91661 1.02753 1.04090 1.27590 1.04631 1.09000 1.11650 0.87135 1.21401 1.42983 1.09313 0.92375 0.95612 1.27417 0.92718 1.09044 0.90690 1.70981 1.41996 1.09624 1.32303 0.83779 0.80022 0.69619 0.77424 1.20954 1.14738 1.17986 1.05591 0.74406 0.75873 0.77124 1.93391 1.80915 1.37043 1.87386 1.93395 1.32766 1.86597 1.86396 1.30253 1.09656 1.13565 1.21401 1.21211 0.98826 0.91648 0.95000 1.21684 0.96480 1.01059 0.96490 1.21964 0.93828 0.94282 0.97930 1.21693 1.01672 0.96549 0.95871 1.21176 0.91713 0.97678 0.95607 0.90642 0.92341 0.89722 0.93377 0.84498 0.81902 0.81189 0.81970 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.62 8.37 71.98 0.60 -5.02 15 2 C -0.41 -18.55 2.44 29.85 0.07 -18.48 15 3 H 0.11 4.41 6.80 -2.39 -0.02 4.40 15 4 C -0.62 -35.27 8.84 25.60 0.23 -35.05 15 5 H 0.03 1.63 7.96 -2.91 -0.02 1.61 15 6 C 0.00 0.19 5.30 84.65 0.45 0.63 15 7 N -0.92 -56.16 13.70 21.45 0.29 -55.87 15 8 Si 1.07 45.75 26.28 68.60 1.80 47.55 15 9 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 10 H -0.22 -7.91 5.74 99.48 0.57 -7.34 15 11 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 12 S 2.48 109.38 4.59 -56.49 -0.26 109.12 15 13 O -0.99 -49.07 17.02 -127.65 -2.17 -51.24 15 14 O -0.99 -48.84 17.12 -127.65 -2.19 -51.02 15 15 C -0.66 -21.85 4.92 22.27 0.11 -21.75 15 16 C -0.05 -1.34 9.47 22.27 0.21 -1.13 15 17 C -0.14 -2.70 10.05 22.27 0.22 -2.48 15 18 C -0.06 -1.01 10.05 22.27 0.22 -0.79 15 19 C -0.14 -2.73 10.05 22.27 0.22 -2.51 15 20 C -0.04 -1.20 8.67 22.27 0.19 -1.01 15 21 H 0.07 2.91 4.84 -2.39 -0.01 2.89 15 22 H 0.06 2.27 8.04 -2.38 -0.02 2.25 15 23 H 0.08 2.47 7.08 -2.39 -0.02 2.46 15 24 H 0.26 16.13 8.73 -92.71 -0.81 15.32 15 25 H 0.14 3.79 7.57 -2.91 -0.02 3.76 15 26 H 0.16 2.02 8.06 -2.91 -0.02 2.00 15 27 H 0.17 1.31 8.06 -2.91 -0.02 1.29 15 28 H 0.16 2.06 8.06 -2.91 -0.02 2.03 15 29 H 0.14 3.83 7.57 -2.91 -0.02 3.81 15 Total: -1.00 -76.36 259.58 0.99 -75.37 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.97 Total: 13.68 kcal Atomic # 6 Polarization: -90.11 SS G_CDS: 2.54 Total: -87.58 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.29 Total: -55.87 kcal Atomic # 8 Polarization: -97.91 SS G_CDS: -4.36 Total: -102.27 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.80 Total: 47.55 kcal Atomic # 16 Polarization: 109.38 SS G_CDS: -0.26 Total: 109.12 kcal Total: -76.36 0.99 -75.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787336.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.454 kcal (2) G-P(sol) polarization free energy of solvation -76.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds