Wall clock time and date at job start Mon Mar 30 2020 03:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42100 * 108.57891 * 2 1 4 4 O 1.42100 * 108.58225 * 228.97519 * 2 1 3 5 5 C 1.81400 * 101.92092 * 114.48590 * 2 1 3 6 6 H 1.08995 * 109.46925 * 64.14736 * 5 2 1 7 7 C 1.50699 * 109.47204 * 184.14970 * 5 2 1 8 8 H 1.07997 * 120.00361 * 114.66094 * 7 5 2 9 9 C 1.37872 * 119.99807 * 294.66129 * 7 5 2 10 10 N 1.31518 * 120.00129 * 351.08973 * 9 7 5 11 11 Si 1.86802 * 120.00239 * 171.36878 * 9 7 5 12 12 H 1.48495 * 109.47536 * 179.72438 * 11 9 7 13 13 H 1.48508 * 109.46973 * 299.72729 * 11 9 7 14 14 H 1.48498 * 109.47043 * 59.71921 * 11 9 7 15 15 C 1.50703 * 109.46936 * 304.14891 * 5 2 1 16 16 C 1.38236 * 120.00019 * 296.63581 * 15 5 2 17 17 C 1.38229 * 119.99798 * 179.79231 * 16 15 5 18 18 C 1.38240 * 120.00217 * 0.43885 * 17 16 15 19 19 C 1.38233 * 120.00053 * 359.81515 * 18 17 16 20 20 C 1.38238 * 119.99713 * 116.91289 * 15 5 2 21 21 H 1.08996 * 109.47296 * 310.77014 * 1 2 3 22 22 H 1.09004 * 109.47135 * 70.76621 * 1 2 3 23 23 H 1.08997 * 109.47306 * 190.76477 * 1 2 3 24 24 H 0.96994 * 119.99703 * 355.04295 * 10 9 7 25 25 H 1.08004 * 119.99961 * 0.02562 * 16 15 5 26 26 H 1.08007 * 120.00103 * 180.27551 * 17 16 15 27 27 H 1.07998 * 119.99940 * 179.83389 * 18 17 16 28 28 H 1.07990 * 120.00292 * 180.02562 * 19 18 17 29 29 H 1.07989 * 120.00101 * 359.97438 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7356 1.6153 6 1 1.8253 -1.7629 1.6397 7 6 3.6789 -0.7245 1.8388 8 1 4.1019 -0.1231 2.6299 9 6 4.5025 -1.4820 1.0333 10 7 3.9827 -2.3456 0.1884 11 14 6.3568 -1.2874 1.1474 12 1 7.0117 -2.2130 0.1885 13 1 6.7289 0.1119 0.8174 14 1 6.8040 -1.6061 2.5271 15 6 1.5120 0.0625 2.6998 16 6 1.8654 1.3824 2.9094 17 6 1.2417 2.1157 3.9014 18 6 0.2710 1.5265 4.6898 19 6 -0.0787 0.2051 4.4837 20 6 0.5420 -0.5270 3.4888 21 1 -0.3634 0.6711 0.7783 22 1 -0.3633 0.3385 -0.9703 23 1 -0.3634 -1.0095 0.1919 24 1 3.0255 -2.5018 0.1822 25 1 2.6262 1.8417 2.2956 26 1 1.5147 3.1483 4.0622 27 1 -0.2143 2.0987 5.4666 28 1 -0.8372 -0.2550 5.0993 29 1 0.2688 -1.5593 3.3278 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082787626.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:16 Heat of formation + Delta-G solvation = -53.383857 kcal Electronic energy + Delta-G solvation = -15572.761952 eV Core-core repulsion = 12974.019727 eV Total energy + Delta-G solvation = -2598.742225 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -38.82066 -35.38857 -34.66428 -34.20226 -31.67661 -30.43580 -28.37067 -27.20923 -23.88543 -22.07814 -20.93881 -17.94069 -17.14778 -16.34717 -15.47537 -15.11271 -14.75505 -14.23141 -14.17352 -13.95573 -13.20938 -12.86278 -12.51932 -12.31396 -12.24429 -12.07016 -11.49080 -11.06914 -10.79743 -10.54773 -10.45323 -10.34540 -10.23286 -9.83675 -9.65438 -9.38727 -8.79049 -8.46836 -8.04320 -7.02239 -4.63683 1.32513 1.84993 1.93925 3.24870 3.31326 3.47549 4.08889 4.19060 4.36358 4.80977 5.08551 5.13584 5.30010 5.36213 5.43101 5.60334 5.72800 5.86887 6.01600 6.11083 6.32821 6.38161 6.40743 6.60385 6.85977 6.97185 7.13997 7.23025 7.48369 7.75666 8.12661 8.73839 10.32041 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.024396 B = 0.011455 C = 0.009302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.460419 B = 2443.680949 C = 3009.234339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.680 4.680 2 S 2.250 3.750 3 O -0.978 6.978 4 O -0.963 6.963 5 C -0.331 4.331 6 H 0.095 0.905 7 C -0.488 4.488 8 H 0.086 0.914 9 C -0.004 4.004 10 N -0.783 5.783 11 Si 1.073 2.927 12 H -0.272 1.272 13 H -0.275 1.275 14 H -0.278 1.278 15 C -0.043 4.043 16 C -0.104 4.104 17 C -0.124 4.124 18 C -0.135 4.135 19 C -0.128 4.128 20 C -0.119 4.119 21 H 0.103 0.897 22 H 0.093 0.907 23 H 0.104 0.896 24 H 0.294 0.706 25 H 0.142 0.858 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.275 2.849 7.256 9.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.821 4.821 2 S 2.443 3.557 3 O -0.975 6.975 4 O -0.958 6.958 5 C -0.438 4.438 6 H 0.112 0.888 7 C -0.542 4.542 8 H 0.104 0.896 9 C -0.221 4.221 10 N -0.418 5.418 11 Si 0.897 3.103 12 H -0.196 1.196 13 H -0.201 1.201 14 H -0.203 1.203 15 C -0.044 4.044 16 C -0.123 4.123 17 C -0.142 4.142 18 C -0.154 4.154 19 C -0.147 4.147 20 C -0.137 4.137 21 H 0.122 0.878 22 H 0.112 0.888 23 H 0.122 0.878 24 H 0.108 0.892 25 H 0.160 0.840 26 H 0.136 0.864 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.640 2.723 5.691 7.284 hybrid contribution -2.351 0.342 0.930 2.551 sum -5.991 3.065 6.622 9.441 Atomic orbital electron populations 1.30474 1.35493 1.08346 1.07792 1.18502 0.76597 0.77233 0.83385 1.93280 1.78515 1.37603 1.88067 1.93409 1.77302 1.65055 1.60054 1.26490 1.03375 1.04000 1.09918 0.88789 1.22176 0.87334 1.26812 1.17901 0.89579 1.26655 1.08849 0.93524 0.93047 1.70631 1.18029 1.25205 1.27925 0.83463 0.72148 0.77669 0.77062 1.19632 1.20051 1.20326 1.19436 0.94601 0.93843 0.96517 1.21481 0.99454 0.93895 0.97459 1.21128 0.97105 0.99699 0.96257 1.21035 0.98871 0.95369 1.00095 1.21000 1.00422 0.94659 0.98571 1.21075 0.96874 0.99692 0.96108 0.87770 0.88837 0.87751 0.89176 0.84008 0.86374 0.86792 0.86650 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -13.15 10.15 101.05 1.03 -12.13 15 2 S 2.25 54.27 4.69 -107.50 -0.50 53.77 15 3 O -0.98 -25.85 16.26 -57.83 -0.94 -26.79 15 4 O -0.96 -26.75 14.97 -57.83 -0.87 -27.61 15 5 C -0.33 -7.50 1.97 -29.03 -0.06 -7.55 15 6 H 0.09 2.03 7.14 -51.93 -0.37 1.66 15 7 C -0.49 -12.12 8.10 -34.44 -0.28 -12.40 15 8 H 0.09 2.06 7.44 -52.49 -0.39 1.67 15 9 C 0.00 -0.10 5.18 -17.82 -0.09 -0.19 15 10 N -0.78 -21.68 12.19 55.43 0.68 -21.00 15 11 Si 1.07 22.75 29.91 -169.99 -5.08 17.67 15 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 13 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 14 H -0.28 -5.39 7.11 56.52 0.40 -4.99 15 15 C -0.04 -0.85 3.87 -104.62 -0.40 -1.26 15 16 C -0.10 -2.04 8.25 -39.59 -0.33 -2.37 15 17 C -0.12 -2.01 10.05 -39.58 -0.40 -2.41 15 18 C -0.14 -1.97 10.05 -39.58 -0.40 -2.37 15 19 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 15 20 C -0.12 -2.02 9.67 -39.58 -0.38 -2.41 15 21 H 0.10 1.88 7.78 -51.93 -0.40 1.48 15 22 H 0.09 1.71 8.14 -51.92 -0.42 1.29 15 23 H 0.10 1.79 8.14 -51.93 -0.42 1.37 15 24 H 0.29 8.03 5.57 -40.82 -0.23 7.80 15 25 H 0.14 3.00 6.86 -52.48 -0.36 2.64 15 26 H 0.12 1.61 8.06 -52.48 -0.42 1.19 15 27 H 0.11 1.31 8.06 -52.49 -0.42 0.88 15 28 H 0.12 1.36 8.06 -52.49 -0.42 0.94 15 29 H 0.12 1.81 7.95 -52.49 -0.42 1.39 15 LS Contribution 259.86 15.07 3.92 3.92 Total: -1.00 -31.19 259.86 -7.59 -38.78 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -3.08 Total: 6.64 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: -1.71 Total: -45.38 kcal Atomic # 7 Polarization: -21.68 SS G_CDS: 0.68 Total: -21.00 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -1.81 Total: -54.40 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.08 Total: 17.67 kcal Atomic # 16 Polarization: 54.27 SS G_CDS: -0.50 Total: 53.77 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.19 -7.59 -38.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787626.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.601 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds