Wall clock time and date at job start Mon Mar 30 2020 03:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42100 * 108.57891 * 2 1 4 4 O 1.42100 * 108.58225 * 228.97519 * 2 1 3 5 5 C 1.81400 * 101.92092 * 114.48590 * 2 1 3 6 6 H 1.08995 * 109.46925 * 64.14736 * 5 2 1 7 7 C 1.50699 * 109.47204 * 184.14970 * 5 2 1 8 8 H 1.07997 * 120.00361 * 114.66094 * 7 5 2 9 9 C 1.37872 * 119.99807 * 294.66129 * 7 5 2 10 10 N 1.31518 * 120.00129 * 351.08973 * 9 7 5 11 11 Si 1.86802 * 120.00239 * 171.36878 * 9 7 5 12 12 H 1.48495 * 109.47536 * 179.72438 * 11 9 7 13 13 H 1.48508 * 109.46973 * 299.72729 * 11 9 7 14 14 H 1.48498 * 109.47043 * 59.71921 * 11 9 7 15 15 C 1.50703 * 109.46936 * 304.14891 * 5 2 1 16 16 C 1.38236 * 120.00019 * 296.63581 * 15 5 2 17 17 C 1.38229 * 119.99798 * 179.79231 * 16 15 5 18 18 C 1.38240 * 120.00217 * 0.43885 * 17 16 15 19 19 C 1.38233 * 120.00053 * 359.81515 * 18 17 16 20 20 C 1.38238 * 119.99713 * 116.91289 * 15 5 2 21 21 H 1.08996 * 109.47296 * 310.77014 * 1 2 3 22 22 H 1.09004 * 109.47135 * 70.76621 * 1 2 3 23 23 H 1.08997 * 109.47306 * 190.76477 * 1 2 3 24 24 H 0.96994 * 119.99703 * 355.04295 * 10 9 7 25 25 H 1.08004 * 119.99961 * 0.02562 * 16 15 5 26 26 H 1.08007 * 120.00103 * 180.27551 * 17 16 15 27 27 H 1.07998 * 119.99940 * 179.83389 * 18 17 16 28 28 H 1.07990 * 120.00292 * 180.02562 * 19 18 17 29 29 H 1.07989 * 120.00101 * 359.97438 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7356 1.6153 6 1 1.8253 -1.7629 1.6397 7 6 3.6789 -0.7245 1.8388 8 1 4.1019 -0.1231 2.6299 9 6 4.5025 -1.4820 1.0333 10 7 3.9827 -2.3456 0.1884 11 14 6.3568 -1.2874 1.1474 12 1 7.0117 -2.2130 0.1885 13 1 6.7289 0.1119 0.8174 14 1 6.8040 -1.6061 2.5271 15 6 1.5120 0.0625 2.6998 16 6 1.8654 1.3824 2.9094 17 6 1.2417 2.1157 3.9014 18 6 0.2710 1.5265 4.6898 19 6 -0.0787 0.2051 4.4837 20 6 0.5420 -0.5270 3.4888 21 1 -0.3634 0.6711 0.7783 22 1 -0.3633 0.3385 -0.9703 23 1 -0.3634 -1.0095 0.1919 24 1 3.0255 -2.5018 0.1822 25 1 2.6262 1.8417 2.2956 26 1 1.5147 3.1483 4.0622 27 1 -0.2143 2.0987 5.4666 28 1 -0.8372 -0.2550 5.0993 29 1 0.2688 -1.5593 3.3278 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082787626.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:15 Heat of formation + Delta-G solvation = -74.416678 kcal Electronic energy + Delta-G solvation = -15573.674003 eV Core-core repulsion = 12974.019727 eV Total energy + Delta-G solvation = -2599.654277 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.15267 -37.42982 -36.56305 -36.10169 -33.25344 -31.71215 -30.03854 -28.81987 -25.67285 -23.36914 -22.33484 -19.87222 -18.97241 -17.83189 -17.17619 -16.72571 -16.62246 -15.86946 -15.79160 -15.49812 -14.80905 -14.23285 -14.05616 -13.90737 -13.85249 -13.48842 -13.09276 -12.78300 -12.55160 -12.48890 -12.20000 -11.95317 -11.80635 -11.59460 -11.44877 -11.14235 -10.64898 -9.74954 -9.49076 -8.96619 -6.60685 -0.47808 0.56127 0.58103 1.51820 1.60663 1.79235 2.36441 2.42101 2.91115 3.00509 3.28920 3.37861 3.90018 4.04098 4.11381 4.25383 4.31718 4.39849 4.58060 4.73147 4.83150 4.84250 5.07459 5.26969 5.40092 5.62197 5.68669 5.81038 5.85855 6.14061 6.25038 6.86163 8.37464 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.024396 B = 0.011455 C = 0.009302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.460419 B = 2443.680949 C = 3009.234339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.249 3.751 3 O -1.010 7.010 4 O -1.007 7.007 5 C -0.326 4.326 6 H 0.099 0.901 7 C -0.519 4.519 8 H 0.083 0.917 9 C -0.042 4.042 10 N -0.829 5.829 11 Si 1.103 2.897 12 H -0.275 1.275 13 H -0.273 1.273 14 H -0.247 1.247 15 C -0.071 4.071 16 C -0.132 4.132 17 C -0.126 4.126 18 C -0.122 4.122 19 C -0.119 4.119 20 C -0.124 4.124 21 H 0.124 0.876 22 H 0.110 0.890 23 H 0.132 0.868 24 H 0.284 0.716 25 H 0.110 0.890 26 H 0.141 0.859 27 H 0.156 0.844 28 H 0.156 0.844 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.615 3.590 9.563 12.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.448 3.552 3 O -1.007 7.007 4 O -1.002 7.002 5 C -0.435 4.435 6 H 0.116 0.884 7 C -0.570 4.570 8 H 0.101 0.899 9 C -0.252 4.252 10 N -0.465 5.465 11 Si 0.921 3.079 12 H -0.200 1.200 13 H -0.199 1.199 14 H -0.171 1.171 15 C -0.072 4.072 16 C -0.151 4.151 17 C -0.144 4.144 18 C -0.140 4.140 19 C -0.137 4.137 20 C -0.143 4.143 21 H 0.143 0.857 22 H 0.129 0.871 23 H 0.151 0.849 24 H 0.097 0.903 25 H 0.128 0.872 26 H 0.159 0.841 27 H 0.173 0.827 28 H 0.173 0.827 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.894 3.456 8.023 10.538 hybrid contribution -1.911 0.243 0.292 1.948 sum -7.805 3.699 8.315 11.989 Atomic orbital electron populations 1.30130 1.29493 1.11058 1.09810 1.17129 0.78863 0.76137 0.83067 1.93253 1.80461 1.38517 1.88447 1.93382 1.79616 1.65841 1.61331 1.26342 1.02913 1.04448 1.09760 0.88359 1.22308 0.88826 1.27404 1.18468 0.89891 1.27812 1.12214 0.92801 0.92411 1.70718 1.17359 1.27861 1.30530 0.83151 0.68579 0.77524 0.78621 1.19988 1.19871 1.17070 1.19331 0.96575 0.93990 0.97315 1.21384 1.00214 0.94443 0.99049 1.21416 0.97063 1.00662 0.95274 1.21531 0.97273 0.95532 0.99679 1.21471 1.00137 0.94626 0.97480 1.21318 0.96142 1.00692 0.96184 0.85687 0.87107 0.84900 0.90331 0.87154 0.84141 0.82656 0.82685 0.84800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -23.74 10.15 113.37 1.15 -22.59 15 2 S 2.25 110.01 4.69 -56.49 -0.26 109.74 15 3 O -1.01 -54.84 16.26 -127.37 -2.07 -56.91 15 4 O -1.01 -57.68 14.97 -127.37 -1.91 -59.59 15 5 C -0.33 -14.99 1.97 29.10 0.06 -14.94 15 6 H 0.10 4.35 7.14 -2.39 -0.02 4.34 15 7 C -0.52 -26.77 8.10 25.60 0.21 -26.56 15 8 H 0.08 4.16 7.44 -2.91 -0.02 4.14 15 9 C -0.04 -2.24 5.18 84.65 0.44 -1.80 15 10 N -0.83 -48.02 12.19 21.45 0.26 -47.76 15 11 Si 1.10 47.10 29.91 68.60 2.05 49.15 15 12 H -0.28 -11.76 7.11 99.48 0.71 -11.05 15 13 H -0.27 -11.42 7.11 99.48 0.71 -10.72 15 14 H -0.25 -9.20 7.11 99.48 0.71 -8.50 15 15 C -0.07 -2.76 3.87 -19.86 -0.08 -2.84 15 16 C -0.13 -5.12 8.25 22.27 0.18 -4.93 15 17 C -0.13 -3.75 10.05 22.27 0.22 -3.53 15 18 C -0.12 -2.93 10.05 22.27 0.22 -2.71 15 19 C -0.12 -2.93 10.05 22.27 0.22 -2.71 15 20 C -0.12 -3.87 9.67 22.27 0.22 -3.66 15 21 H 0.12 4.09 7.78 -2.39 -0.02 4.07 15 22 H 0.11 3.71 8.14 -2.39 -0.02 3.69 15 23 H 0.13 4.10 8.14 -2.39 -0.02 4.08 15 24 H 0.28 16.29 5.57 -92.71 -0.52 15.77 15 25 H 0.11 4.89 6.86 -2.91 -0.02 4.87 15 26 H 0.14 3.42 8.06 -2.91 -0.02 3.40 15 27 H 0.16 2.50 8.06 -2.91 -0.02 2.48 15 28 H 0.16 2.62 8.06 -2.92 -0.02 2.60 15 29 H 0.13 3.66 7.95 -2.92 -0.02 3.64 15 Total: -1.00 -71.13 259.86 2.31 -68.81 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 1.39 Total: 22.82 kcal Atomic # 6 Polarization: -89.11 SS G_CDS: 2.85 Total: -86.26 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.26 Total: -47.76 kcal Atomic # 8 Polarization: -112.53 SS G_CDS: -3.98 Total: -116.50 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.05 Total: 49.15 kcal Atomic # 16 Polarization: 110.01 SS G_CDS: -0.26 Total: 109.74 kcal Total: -71.13 2.31 -68.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787626.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.603 kcal (2) G-P(sol) polarization free energy of solvation -71.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds