Wall clock time and date at job start Mon Mar 30 2020 03:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42107 * 108.57848 * 2 1 4 4 O 1.42097 * 108.57764 * 131.02365 * 2 1 3 5 5 C 1.81404 * 101.92349 * 245.51261 * 2 1 3 6 6 H 1.08995 * 109.46778 * 293.45500 * 5 2 1 7 7 C 1.50697 * 109.47177 * 173.45284 * 5 2 1 8 8 H 1.07991 * 120.00113 * 239.99908 * 7 5 2 9 9 C 1.37885 * 119.99714 * 60.00144 * 7 5 2 10 10 N 1.31513 * 120.00249 * 359.97438 * 9 7 5 11 11 Si 1.86795 * 119.99727 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46928 * 60.00404 * 11 9 7 13 13 H 1.48500 * 109.47122 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47634 * 299.99928 * 11 9 7 15 15 C 1.50701 * 109.46772 * 53.45411 * 5 2 1 16 16 C 1.38232 * 119.99936 * 62.99921 * 15 5 2 17 17 C 1.38241 * 119.99590 * 179.78864 * 16 15 5 18 18 C 1.38238 * 120.00042 * 0.43275 * 17 16 15 19 19 C 1.38226 * 119.99762 * 359.81543 * 18 17 16 20 20 C 1.38233 * 120.00676 * 359.97438 * 19 18 17 21 21 H 1.09007 * 109.47240 * 56.28658 * 1 2 3 22 22 H 1.08999 * 109.47576 * 176.28498 * 1 2 3 23 23 H 1.09004 * 109.47294 * 296.28805 * 1 2 3 24 24 H 0.96994 * 120.00128 * 180.02562 * 10 9 7 25 25 H 1.08000 * 120.00167 * 359.97438 * 16 15 5 26 26 H 1.07994 * 119.99480 * 180.27199 * 17 16 15 27 27 H 1.07994 * 119.99470 * 179.83683 * 18 17 16 28 28 H 1.08003 * 119.99803 * 179.97438 * 19 18 17 29 29 H 1.07997 * 120.00487 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 1.0162 5 6 2.1888 -0.7357 -1.6153 6 1 1.8636 -1.7760 -1.6249 7 6 3.6736 -0.6711 -1.8643 8 1 4.0549 -0.1318 -2.7187 9 6 4.5454 -1.3006 -1.0012 10 7 4.0811 -1.9569 0.0396 11 14 6.3859 -1.2212 -1.3103 12 1 6.8292 0.1961 -1.2975 13 1 7.0993 -1.9731 -0.2469 14 1 6.6924 -1.8238 -2.6324 15 6 1.4647 0.0270 -2.6947 16 6 1.7597 1.3592 -2.9162 17 6 1.0986 2.0575 -3.9093 18 6 0.1362 1.4261 -4.6749 19 6 -0.1623 0.0953 -4.4498 20 6 0.5018 -0.6043 -3.4597 21 1 -0.3634 0.5704 -0.8549 22 1 -0.3634 -1.0255 -0.0666 23 1 -0.3634 0.4551 0.9214 24 1 4.6944 -2.3995 0.6469 25 1 2.5087 1.8536 -2.3154 26 1 1.3322 3.0971 -4.0853 27 1 -0.3821 1.9725 -5.4489 28 1 -0.9145 -0.3979 -5.0477 29 1 0.2682 -1.6439 -3.2836 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082787629.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:19 Heat of formation + Delta-G solvation = -41.940964 kcal Electronic energy + Delta-G solvation = -15557.757318 eV Core-core repulsion = 12959.511294 eV Total energy + Delta-G solvation = -2598.246024 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.72137 -35.09558 -34.26150 -33.89967 -31.71958 -30.35085 -28.24354 -27.47408 -23.84770 -22.00373 -20.70351 -17.54040 -16.72840 -16.32650 -15.30918 -15.04553 -14.63691 -14.34838 -14.00735 -13.86353 -12.89662 -12.71363 -12.36840 -12.19047 -12.05503 -11.97693 -11.33187 -11.11732 -10.74600 -10.70061 -10.26493 -10.22762 -10.15270 -9.90858 -9.53532 -9.20546 -8.76281 -8.38935 -7.92873 -6.45468 -4.50956 1.53111 1.92885 2.05815 3.17536 3.21349 3.23625 4.07021 4.31261 4.52722 4.88608 5.28689 5.31867 5.38146 5.45707 5.55439 5.71378 5.87875 6.01729 6.13459 6.26957 6.46678 6.51029 6.58511 6.78459 6.94865 7.05949 7.31777 7.38732 7.44660 7.65019 8.32794 8.91012 10.44270 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.024560 B = 0.011496 C = 0.009202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.790474 B = 2435.113567 C = 3042.214822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.691 4.691 2 S 2.302 3.698 3 O -0.986 6.986 4 O -0.924 6.924 5 C -0.322 4.322 6 H 0.101 0.899 7 C -0.445 4.445 8 H 0.087 0.913 9 C 0.029 3.971 10 N -0.779 5.779 11 Si 0.915 3.085 12 H -0.266 1.266 13 H -0.278 1.278 14 H -0.268 1.268 15 C -0.048 4.048 16 C -0.108 4.108 17 C -0.125 4.125 18 C -0.138 4.138 19 C -0.129 4.129 20 C -0.119 4.119 21 H 0.102 0.898 22 H 0.104 0.896 23 H 0.092 0.908 24 H 0.285 0.715 25 H 0.143 0.857 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.504 1.957 -6.325 8.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.831 4.831 2 S 2.491 3.509 3 O -0.982 6.982 4 O -0.918 6.918 5 C -0.430 4.430 6 H 0.119 0.881 7 C -0.495 4.495 8 H 0.105 0.895 9 C -0.185 4.185 10 N -0.415 5.415 11 Si 0.740 3.260 12 H -0.191 1.191 13 H -0.203 1.203 14 H -0.193 1.193 15 C -0.049 4.049 16 C -0.126 4.126 17 C -0.143 4.143 18 C -0.156 4.156 19 C -0.147 4.147 20 C -0.138 4.138 21 H 0.121 0.879 22 H 0.123 0.877 23 H 0.111 0.889 24 H 0.096 0.904 25 H 0.160 0.840 26 H 0.135 0.865 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.170 2.208 -5.293 7.722 hybrid contribution 0.113 -0.215 -0.445 0.507 sum -5.057 1.993 -5.738 7.904 Atomic orbital electron populations 1.30670 1.36287 1.08317 1.07805 1.15867 0.75768 0.76512 0.82704 1.93291 1.78756 1.37986 1.88168 1.93473 1.75132 1.64590 1.58654 1.26463 1.02376 1.04706 1.09424 0.88144 1.20942 0.86590 1.30874 1.11100 0.89519 1.25603 1.01799 0.95887 0.95169 1.70156 1.36766 1.25123 1.09432 0.86211 0.82011 0.79286 0.78538 1.19120 1.20337 1.19297 1.19693 0.94507 0.93818 0.96866 1.21514 0.99464 0.94221 0.97446 1.21123 0.97044 0.99666 0.96427 1.21013 0.99135 0.95154 1.00292 1.21004 1.00369 0.94733 0.98632 1.21108 0.96677 0.99769 0.96197 0.87874 0.87704 0.88874 0.90437 0.83969 0.86503 0.86932 0.86768 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.69 -13.47 10.22 101.05 1.03 -12.44 15 2 S 2.30 55.91 4.59 -107.50 -0.49 55.41 15 3 O -0.99 -26.11 16.32 -57.83 -0.94 -27.05 15 4 O -0.92 -25.67 14.87 -57.83 -0.86 -26.53 15 5 C -0.32 -7.39 2.37 -29.04 -0.07 -7.45 15 6 H 0.10 2.25 7.88 -51.93 -0.41 1.84 15 7 C -0.44 -11.14 8.13 -34.44 -0.28 -11.42 15 8 H 0.09 2.09 7.51 -52.49 -0.39 1.70 15 9 C 0.03 0.76 5.28 -17.82 -0.09 0.66 15 10 N -0.78 -21.17 9.92 55.43 0.55 -20.62 15 11 Si 0.91 19.81 29.54 -169.99 -5.02 14.79 15 12 H -0.27 -5.78 7.11 56.52 0.40 -5.37 15 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 14 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 15 C -0.05 -0.96 3.57 -104.62 -0.37 -1.33 15 16 C -0.11 -2.13 8.37 -39.58 -0.33 -2.46 15 17 C -0.12 -2.04 10.05 -39.58 -0.40 -2.44 15 18 C -0.14 -2.03 10.05 -39.59 -0.40 -2.43 15 19 C -0.13 -1.94 10.05 -39.59 -0.40 -2.34 15 20 C -0.12 -2.04 9.67 -39.58 -0.38 -2.43 15 21 H 0.10 1.88 7.44 -51.92 -0.39 1.49 15 22 H 0.10 1.84 8.14 -51.92 -0.42 1.42 15 23 H 0.09 1.70 8.14 -51.92 -0.42 1.28 15 24 H 0.28 7.35 8.31 -40.82 -0.34 7.02 15 25 H 0.14 3.02 6.86 -52.49 -0.36 2.66 15 26 H 0.12 1.61 8.06 -52.49 -0.42 1.19 15 27 H 0.11 1.32 8.06 -52.49 -0.42 0.90 15 28 H 0.11 1.37 8.06 -52.48 -0.42 0.95 15 29 H 0.12 1.85 7.95 -52.49 -0.42 1.43 15 LS Contribution 260.71 15.07 3.93 3.93 Total: -1.00 -30.60 260.71 -7.75 -38.35 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -3.22 Total: 5.79 kcal Atomic # 6 Polarization: -42.38 SS G_CDS: -1.69 Total: -44.07 kcal Atomic # 7 Polarization: -21.17 SS G_CDS: 0.55 Total: -20.62 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -1.80 Total: -53.58 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 16 Polarization: 55.91 SS G_CDS: -0.49 Total: 55.41 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.60 -7.75 -38.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787629.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.593 kcal (2) G-P(sol) polarization free energy of solvation -30.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds