Wall clock time and date at job start Mon Mar 30 2020 03:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35898 * 117.00165 * 2 1 4 4 C 1.38758 * 120.05550 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94531 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05533 * 359.97438 * 5 4 3 7 7 C 1.38244 * 120.11122 * 359.74492 * 6 5 4 8 8 C 1.38162 * 120.05431 * 0.50567 * 7 6 5 9 9 S 1.76204 * 120.02626 * 179.76745 * 8 7 6 10 10 O 1.42105 * 103.00028 * 208.57877 * 9 8 7 11 11 C 1.81395 * 102.99637 * 94.73009 * 9 8 7 12 12 C 1.50709 * 109.46933 * 180.02562 * 11 9 8 13 13 H 1.08001 * 119.99881 * 359.97438 * 12 11 9 14 14 C 1.37874 * 119.99872 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99907 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00307 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47292 * 89.99482 * 16 14 12 18 18 H 1.48500 * 109.47022 * 209.99992 * 16 14 12 19 19 H 1.48497 * 109.46880 * 329.99882 * 16 14 12 20 20 H 1.09004 * 109.46949 * 299.99771 * 1 2 3 21 21 H 1.08999 * 109.46796 * 60.00066 * 1 2 3 22 22 H 1.09003 * 109.46783 * 179.97438 * 1 2 3 23 23 H 1.07998 * 120.02708 * 359.97438 * 4 3 2 24 24 H 1.07998 * 119.97283 * 179.97438 * 5 4 3 25 25 H 1.08003 * 119.94240 * 180.02562 * 6 5 4 26 26 H 1.07998 * 119.97276 * 180.25944 * 7 6 5 27 27 H 1.08999 * 109.47227 * 299.99694 * 11 9 8 28 28 H 1.09003 * 109.47763 * 59.99945 * 11 9 8 29 29 H 0.96998 * 120.00146 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0560 2.5171 0.0069 8 6 3.4311 1.2848 0.0012 9 16 4.3930 -0.1915 0.0018 10 8 3.5516 -1.1215 -0.6665 11 6 4.4858 -0.6172 1.7626 12 6 5.2913 -1.8796 1.9325 13 1 5.7055 -2.3763 1.0675 14 6 5.4994 -2.4004 3.1920 15 7 6.2019 -3.5023 3.3402 16 14 4.7824 -1.5416 4.6880 17 1 3.4244 -2.0762 4.9622 18 1 5.6565 -1.7836 5.8639 19 1 4.6964 -0.0823 4.4271 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.2128 2.3204 0.0005 24 1 1.3340 4.5114 0.0011 25 1 3.7923 4.6381 0.0024 26 1 5.1344 2.5751 0.0116 27 1 4.9655 0.1955 2.3081 28 1 3.4799 -0.7724 2.1526 29 1 6.3486 -3.8685 4.2263 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082788024.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:34 Heat of formation + Delta-G solvation = -46.361780 kcal Electronic energy + Delta-G solvation = -14925.752887 eV Core-core repulsion = 12327.315162 eV Total energy + Delta-G solvation = -2598.437725 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.84570 -37.14786 -34.54363 -32.94603 -31.04149 -29.91899 -29.24435 -27.13757 -23.00508 -22.22732 -21.95336 -18.33810 -17.03862 -16.76989 -16.01554 -15.57582 -15.38347 -14.47019 -14.43918 -13.90636 -13.56478 -13.33886 -12.86613 -12.59510 -12.26387 -12.06639 -11.64247 -11.32060 -11.06035 -10.98204 -10.90182 -10.45452 -10.01407 -9.52605 -9.13276 -8.88302 -8.63724 -8.10765 -7.32237 -6.12333 -4.14610 1.23322 1.57657 2.77538 3.27292 3.34442 3.37928 3.49412 3.68272 4.01564 4.39962 4.80409 4.89149 5.04880 5.13465 5.22105 5.23592 5.30406 5.52337 5.58506 5.76799 5.94373 6.34556 6.38753 6.54139 6.79004 6.81623 6.91993 7.53889 7.58105 8.27769 8.85268 9.47655 10.99452 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.027192 B = 0.008073 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.459148 B = 3467.447028 C = 3557.340905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.284 6.284 3 C 0.184 3.816 4 C -0.233 4.233 5 C -0.060 4.060 6 C -0.182 4.182 7 C -0.011 4.011 8 C -0.489 4.489 9 S 1.315 4.685 10 O -0.847 6.847 11 C -0.310 4.310 12 C -0.509 4.509 13 H 0.080 0.920 14 C 0.080 3.920 15 N -0.894 5.894 16 Si 0.881 3.119 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.264 1.264 20 H 0.051 0.949 21 H 0.052 0.948 22 H 0.100 0.900 23 H 0.123 0.877 24 H 0.120 0.880 25 H 0.124 0.876 26 H 0.141 0.859 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.166 15.196 -5.733 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.195 6.195 3 C 0.136 3.864 4 C -0.252 4.252 5 C -0.078 4.078 6 C -0.201 4.201 7 C -0.030 4.030 8 C -0.583 4.583 9 S 1.512 4.488 10 O -0.843 6.843 11 C -0.449 4.449 12 C -0.548 4.548 13 H 0.098 0.902 14 C -0.123 4.123 15 N -0.532 5.532 16 Si 0.708 3.292 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.188 1.188 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.118 0.882 23 H 0.141 0.859 24 H 0.138 0.862 25 H 0.142 0.858 26 H 0.159 0.841 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.682 14.413 -6.411 16.767 hybrid contribution -2.889 0.367 1.987 3.525 sum -8.571 14.780 -4.424 17.649 Atomic orbital electron populations 1.23066 0.79240 1.04049 1.00582 1.86492 1.20537 1.25609 1.86871 1.18952 0.92102 0.84552 0.90819 1.21280 0.99782 0.92833 1.11354 1.20970 0.94959 0.96534 0.95379 1.21117 0.93944 0.98576 1.06482 1.20755 1.00000 0.90019 0.92190 1.28028 1.00130 1.16052 1.14064 1.69151 1.07823 0.82607 0.89267 1.93052 1.67064 1.58412 1.65765 1.25501 1.01794 1.03920 1.13701 1.20261 1.32950 1.06527 0.95090 0.90221 1.24924 0.94211 0.94419 0.98794 1.69886 1.39404 1.20360 1.23516 0.86747 0.79234 0.80843 0.82393 1.20451 1.21067 1.18839 0.93066 0.92935 0.88160 0.85887 0.86171 0.85802 0.84095 0.91491 0.94488 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 15 2 O -0.28 -5.80 8.30 -41.48 -0.34 -6.14 15 3 C 0.18 3.41 6.60 -39.21 -0.26 3.15 15 4 C -0.23 -3.47 9.04 -39.43 -0.36 -3.82 15 5 C -0.06 -0.76 10.04 -39.61 -0.40 -1.16 15 6 C -0.18 -2.24 10.04 -39.56 -0.40 -2.64 15 7 C -0.01 -0.15 9.75 -39.61 -0.39 -0.53 15 8 C -0.49 -8.72 5.60 -39.43 -0.22 -8.94 15 9 S 1.31 26.36 13.35 -107.50 -1.43 24.93 15 10 O -0.85 -21.78 15.82 -57.29 -0.91 -22.68 15 11 C -0.31 -7.47 4.71 36.01 0.17 -7.30 15 12 C -0.51 -14.54 9.68 -34.44 -0.33 -14.87 15 13 H 0.08 2.40 7.96 -52.49 -0.42 1.98 15 14 C 0.08 2.35 5.47 -17.82 -0.10 2.25 15 15 N -0.89 -27.38 13.96 55.43 0.77 -26.61 15 16 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 15 17 H -0.28 -7.03 7.11 56.52 0.40 -6.62 15 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 19 H -0.26 -6.23 6.54 56.52 0.37 -5.86 15 20 H 0.05 0.64 7.66 -51.93 -0.40 0.24 15 21 H 0.05 0.64 7.66 -51.93 -0.40 0.24 15 22 H 0.10 1.32 8.14 -51.93 -0.42 0.90 15 23 H 0.12 1.53 6.30 -52.49 -0.33 1.20 15 24 H 0.12 1.14 8.06 -52.49 -0.42 0.72 15 25 H 0.12 1.13 8.06 -52.48 -0.42 0.71 15 26 H 0.14 1.38 8.06 -52.49 -0.42 0.96 15 27 H 0.07 1.47 7.20 -51.92 -0.37 1.10 15 28 H 0.04 0.96 7.57 -51.92 -0.39 0.56 15 29 H 0.27 7.59 8.31 -40.82 -0.34 7.25 15 LS Contribution 265.37 15.07 4.00 4.00 Total: -1.00 -37.78 265.37 -7.04 -44.82 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: -3.17 Total: -3.12 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: -1.29 Total: -32.49 kcal Atomic # 7 Polarization: -27.38 SS G_CDS: 0.77 Total: -26.61 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -1.25 Total: -28.83 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Atomic # 16 Polarization: 26.36 SS G_CDS: -1.43 Total: 24.93 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -37.78 -7.04 -44.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788024.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.541 kcal (2) G-P(sol) polarization free energy of solvation -37.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds