Wall clock time and date at job start Mon Mar 30 2020 03:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35898 * 117.00165 * 2 1 4 4 C 1.38758 * 120.05550 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94531 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05533 * 359.97438 * 5 4 3 7 7 C 1.38244 * 120.11122 * 359.74492 * 6 5 4 8 8 C 1.38162 * 120.05431 * 0.50567 * 7 6 5 9 9 S 1.76204 * 120.02626 * 179.76745 * 8 7 6 10 10 O 1.42105 * 103.00028 * 208.57877 * 9 8 7 11 11 C 1.81395 * 102.99637 * 94.73009 * 9 8 7 12 12 C 1.50709 * 109.46933 * 180.02562 * 11 9 8 13 13 H 1.08001 * 119.99881 * 359.97438 * 12 11 9 14 14 C 1.37874 * 119.99872 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99907 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00307 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47292 * 89.99482 * 16 14 12 18 18 H 1.48500 * 109.47022 * 209.99992 * 16 14 12 19 19 H 1.48497 * 109.46880 * 329.99882 * 16 14 12 20 20 H 1.09004 * 109.46949 * 299.99771 * 1 2 3 21 21 H 1.08999 * 109.46796 * 60.00066 * 1 2 3 22 22 H 1.09003 * 109.46783 * 179.97438 * 1 2 3 23 23 H 1.07998 * 120.02708 * 359.97438 * 4 3 2 24 24 H 1.07998 * 119.97283 * 179.97438 * 5 4 3 25 25 H 1.08003 * 119.94240 * 180.02562 * 6 5 4 26 26 H 1.07998 * 119.97276 * 180.25944 * 7 6 5 27 27 H 1.08999 * 109.47227 * 299.99694 * 11 9 8 28 28 H 1.09003 * 109.47763 * 59.99945 * 11 9 8 29 29 H 0.96998 * 120.00146 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0560 2.5171 0.0069 8 6 3.4311 1.2848 0.0012 9 16 4.3930 -0.1915 0.0018 10 8 3.5516 -1.1215 -0.6665 11 6 4.4858 -0.6172 1.7626 12 6 5.2913 -1.8796 1.9325 13 1 5.7055 -2.3763 1.0675 14 6 5.4994 -2.4004 3.1920 15 7 6.2019 -3.5023 3.3402 16 14 4.7824 -1.5416 4.6880 17 1 3.4244 -2.0762 4.9622 18 1 5.6565 -1.7836 5.8639 19 1 4.6964 -0.0823 4.4271 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.2128 2.3204 0.0005 24 1 1.3340 4.5114 0.0011 25 1 3.7923 4.6381 0.0024 26 1 5.1344 2.5751 0.0116 27 1 4.9655 0.1955 2.3081 28 1 3.4799 -0.7724 2.1526 29 1 6.3486 -3.8685 4.2263 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082788024.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:34 Heat of formation + Delta-G solvation = -73.801632 kcal Electronic energy + Delta-G solvation = -14926.942768 eV Core-core repulsion = 12327.315162 eV Total energy + Delta-G solvation = -2599.627606 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.03060 -38.30058 -36.38532 -35.13372 -32.16251 -31.33437 -31.00363 -28.25692 -24.78585 -23.70430 -23.05244 -19.62315 -19.03612 -18.27283 -17.24777 -16.87878 -16.72789 -16.47550 -15.57352 -15.34389 -14.95828 -14.83161 -14.54486 -14.36591 -13.69672 -13.40729 -13.07655 -12.92000 -12.65833 -12.29948 -12.16382 -12.08639 -11.87649 -11.69474 -10.86699 -10.75909 -10.10455 -9.29067 -9.01522 -8.35184 -6.42977 0.07312 0.48412 1.25158 1.30604 1.31910 1.44019 2.17626 2.31246 2.40478 2.77807 2.97473 3.30492 3.88622 3.98929 4.16211 4.19179 4.35540 4.50293 4.52031 4.74190 4.77210 4.92213 4.94618 5.26792 5.37696 5.48180 5.52143 5.91879 6.02095 6.37552 6.61944 7.22675 8.79962 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.027192 B = 0.008073 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.459148 B = 3467.447028 C = 3557.340905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.147 3.853 4 C -0.241 4.241 5 C -0.051 4.051 6 C -0.174 4.174 7 C -0.008 4.008 8 C -0.521 4.521 9 S 1.376 4.624 10 O -0.913 6.913 11 C -0.321 4.321 12 C -0.521 4.521 13 H 0.045 0.955 14 C 0.020 3.980 15 N -0.940 5.940 16 Si 0.944 3.056 17 H -0.285 1.285 18 H -0.271 1.271 19 H -0.237 1.237 20 H 0.068 0.932 21 H 0.073 0.927 22 H 0.100 0.900 23 H 0.142 0.858 24 H 0.161 0.839 25 H 0.167 0.833 26 H 0.180 0.820 27 H 0.094 0.906 28 H 0.013 0.987 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.824 19.466 -5.225 21.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.099 3.901 4 C -0.260 4.260 5 C -0.068 4.068 6 C -0.193 4.193 7 C -0.026 4.026 8 C -0.618 4.618 9 S 1.576 4.424 10 O -0.909 6.909 11 C -0.458 4.458 12 C -0.560 4.560 13 H 0.063 0.937 14 C -0.180 4.180 15 N -0.580 5.580 16 Si 0.767 3.233 17 H -0.212 1.212 18 H -0.196 1.196 19 H -0.160 1.160 20 H 0.087 0.913 21 H 0.091 0.909 22 H 0.118 0.882 23 H 0.160 0.840 24 H 0.178 0.822 25 H 0.185 0.815 26 H 0.197 0.803 27 H 0.112 0.888 28 H 0.032 0.968 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.316 18.656 -5.896 20.560 hybrid contribution -2.749 -0.796 1.702 3.330 sum -9.065 17.860 -4.194 20.463 Atomic orbital electron populations 1.23300 0.77150 1.04794 1.02402 1.86410 1.23162 1.27631 1.87597 1.19393 0.92834 0.85170 0.92664 1.21569 1.00819 0.92488 1.11144 1.21554 0.95782 0.96961 0.92547 1.21661 0.93928 0.99684 1.04053 1.21307 1.02225 0.88859 0.90257 1.27594 1.00164 1.15740 1.18345 1.68225 1.07187 0.81934 0.85085 1.92926 1.69484 1.61711 1.66767 1.25601 0.99558 1.02655 1.18009 1.20571 1.33014 1.08182 0.94195 0.93667 1.25891 0.94600 0.95200 1.02301 1.70022 1.41159 1.22214 1.24582 0.85740 0.77906 0.81075 0.78532 1.21179 1.19592 1.16040 0.91304 0.90893 0.88151 0.84010 0.82191 0.81505 0.80304 0.88799 0.96804 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.81 113.37 1.11 1.63 15 2 O -0.34 -13.97 8.30 -71.31 -0.59 -14.56 15 3 C 0.15 5.30 6.60 22.51 0.15 5.45 15 4 C -0.24 -6.44 9.04 22.37 0.20 -6.24 15 5 C -0.05 -1.02 10.04 22.25 0.22 -0.79 15 6 C -0.17 -3.28 10.04 22.28 0.22 -3.06 15 7 C -0.01 -0.18 9.75 22.25 0.22 0.03 15 8 C -0.52 -17.81 5.60 22.37 0.13 -17.68 15 9 S 1.38 56.11 13.35 -56.49 -0.75 55.35 15 10 O -0.91 -49.15 15.82 -127.89 -2.02 -51.17 15 11 C -0.32 -15.62 4.71 71.24 0.34 -15.28 15 12 C -0.52 -30.79 9.68 25.60 0.25 -30.54 15 13 H 0.05 2.89 7.96 -2.91 -0.02 2.87 15 14 C 0.02 1.16 5.47 84.65 0.46 1.63 15 15 N -0.94 -59.43 13.96 21.45 0.30 -59.13 15 16 Si 0.94 45.30 27.47 68.60 1.88 47.18 15 17 H -0.29 -13.93 7.11 99.48 0.71 -13.22 15 18 H -0.27 -12.27 7.11 99.48 0.71 -11.57 15 19 H -0.24 -10.26 6.54 99.48 0.65 -9.61 15 20 H 0.07 1.65 7.66 -2.38 -0.02 1.63 15 21 H 0.07 1.71 7.66 -2.39 -0.02 1.69 15 22 H 0.10 2.73 8.14 -2.39 -0.02 2.71 15 23 H 0.14 3.10 6.30 -2.91 -0.02 3.08 15 24 H 0.16 1.95 8.06 -2.91 -0.02 1.92 15 25 H 0.17 1.77 8.06 -2.91 -0.02 1.75 15 26 H 0.18 2.64 8.06 -2.91 -0.02 2.61 15 27 H 0.09 3.98 7.20 -2.39 -0.02 3.96 15 28 H 0.01 0.71 7.57 -2.39 -0.02 0.69 15 29 H 0.27 15.82 8.31 -92.71 -0.77 15.05 15 Total: -1.00 -86.83 265.37 3.20 -83.62 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 1.09 Total: 3.57 kcal Atomic # 6 Polarization: -68.16 SS G_CDS: 3.30 Total: -64.86 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 0.30 Total: -59.13 kcal Atomic # 8 Polarization: -63.12 SS G_CDS: -2.62 Total: -65.73 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.88 Total: 47.18 kcal Atomic # 16 Polarization: 56.11 SS G_CDS: -0.75 Total: 55.35 kcal Total: -86.83 3.20 -83.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788024.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.822 kcal (2) G-P(sol) polarization free energy of solvation -86.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds