Wall clock time and date at job start Mon Mar 30 2020 03:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 116.99986 * 2 1 4 4 C 1.38735 * 120.05719 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94523 * 180.02562 * 4 3 2 6 6 C 1.38257 * 120.05528 * 0.02955 * 5 4 3 7 7 S 1.76195 * 119.94523 * 179.97438 * 6 5 4 8 8 O 1.42097 * 103.00120 * 336.15042 * 7 6 5 9 9 C 1.81399 * 102.99929 * 89.99943 * 7 6 5 10 10 C 1.50703 * 109.47147 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00275 * 0.02562 * 10 9 7 12 12 C 1.37884 * 119.99709 * 179.97438 * 10 9 7 13 13 N 1.31512 * 119.99653 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00192 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47123 * 89.99910 * 14 12 10 16 16 H 1.48503 * 109.46827 * 209.99657 * 14 12 10 17 17 H 1.48501 * 109.47006 * 329.99902 * 14 12 10 18 18 C 1.38270 * 120.11219 * 0.24640 * 6 5 4 19 19 C 1.38143 * 120.05387 * 359.45658 * 18 6 5 20 20 H 1.09010 * 109.47030 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47295 * 299.99958 * 1 2 3 22 22 H 1.09004 * 109.47438 * 60.00091 * 1 2 3 23 23 H 1.08005 * 120.02539 * 0.02562 * 4 3 2 24 24 H 1.07999 * 119.96985 * 180.02562 * 5 4 3 25 25 H 1.09001 * 109.47190 * 299.99963 * 9 7 6 26 26 H 1.09004 * 109.47089 * 60.00096 * 9 7 6 27 27 H 0.96997 * 120.00125 * 180.02562 * 13 12 10 28 28 H 1.07998 * 119.97414 * 179.70463 * 18 6 5 29 29 H 1.07999 * 120.02712 * 180.25124 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0561 2.5170 0.0011 6 6 3.3019 3.6758 0.0017 7 16 4.1018 5.2457 0.0031 8 8 5.3750 4.9553 0.5630 9 6 4.2875 5.6106 -1.7641 10 6 4.9679 6.9446 -1.9329 11 1 5.2598 7.5157 -1.0639 12 6 5.2187 7.4356 -3.1967 13 7 5.8120 8.6000 -3.3439 14 14 4.7145 6.4476 -4.6996 15 1 3.3339 6.8223 -5.0980 16 1 5.6480 6.7364 -5.8179 17 1 4.7608 4.9986 -4.3778 18 6 1.9210 3.6047 0.0069 19 6 1.2915 2.3751 0.0002 20 1 -0.3633 -1.0278 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 4.0208 0.3799 0.0005 24 1 5.1345 2.5751 0.0011 25 1 4.8905 4.8336 -2.2341 26 1 3.3044 5.6416 -2.2340 27 1 5.9881 8.9457 -4.2329 28 1 1.3341 4.5113 0.0122 29 1 0.2129 2.3202 0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082788332.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:36 Heat of formation + Delta-G solvation = -79.121474 kcal Electronic energy + Delta-G solvation = -14416.715154 eV Core-core repulsion = 11816.856862 eV Total energy + Delta-G solvation = -2599.858292 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.06309 -38.35478 -36.61941 -35.13532 -32.15609 -31.43463 -31.10569 -28.17568 -24.73349 -23.77296 -23.20299 -19.45686 -19.08730 -18.62091 -17.28137 -16.88072 -16.70913 -16.55372 -15.64032 -15.46423 -15.01818 -14.64412 -14.48405 -14.34821 -13.83610 -13.68697 -13.24027 -12.89681 -12.78298 -12.41238 -12.11142 -12.01444 -11.85026 -11.70469 -10.94749 -10.82029 -10.05363 -9.57519 -9.02680 -8.34763 -6.43387 0.01597 0.32533 1.16768 1.31584 1.36171 1.46259 2.12491 2.29412 2.32480 2.67640 2.96529 3.19047 3.80272 3.89226 4.27322 4.36513 4.43026 4.49592 4.60043 4.74479 4.75708 4.89468 4.98093 5.01302 5.24700 5.36828 5.47708 5.70071 6.01871 6.36044 6.62457 7.22817 8.80163 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.033275 B = 0.006337 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.276399 B = 4417.354415 C = 4862.423111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.334 6.334 3 C 0.150 3.850 4 C -0.186 4.186 5 C -0.043 4.043 6 C -0.508 4.508 7 S 1.381 4.619 8 O -0.931 6.931 9 C -0.324 4.324 10 C -0.525 4.525 11 H 0.047 0.953 12 C 0.019 3.981 13 N -0.940 5.940 14 Si 0.947 3.053 15 H -0.243 1.243 16 H -0.287 1.287 17 H -0.265 1.265 18 C 0.003 3.997 19 C -0.219 4.219 20 H 0.120 0.880 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.133 0.867 24 H 0.103 0.897 25 H 0.020 0.980 26 H 0.099 0.901 27 H 0.270 0.730 28 H 0.185 0.815 29 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.933 -14.184 5.549 23.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.103 3.897 4 C -0.206 4.206 5 C -0.063 4.063 6 C -0.605 4.605 7 S 1.582 4.418 8 O -0.927 6.927 9 C -0.462 4.462 10 C -0.563 4.563 11 H 0.065 0.935 12 C -0.181 4.181 13 N -0.579 5.579 14 Si 0.770 3.230 15 H -0.166 1.166 16 H -0.213 1.213 17 H -0.190 1.190 18 C -0.016 4.016 19 C -0.238 4.238 20 H 0.138 0.862 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.151 0.849 24 H 0.121 0.879 25 H 0.038 0.962 26 H 0.117 0.883 27 H 0.079 0.921 28 H 0.202 0.798 29 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -17.505 -13.726 6.226 23.099 hybrid contribution 1.735 -1.695 -1.876 3.066 sum -15.770 -15.421 4.350 22.482 Atomic orbital electron populations 1.23467 0.75718 1.05919 1.02937 1.86063 1.24199 1.26553 1.87923 1.19277 0.91972 0.85464 0.92942 1.20556 0.92871 0.98097 1.09040 1.20905 0.99246 0.92565 0.93561 1.27871 1.03570 1.14041 1.15049 1.68109 0.95180 0.91540 0.86971 1.92876 1.45369 1.82805 1.71695 1.25630 1.03243 0.99879 1.17409 1.20576 1.39650 1.02192 0.93906 0.93519 1.25916 0.94084 0.95627 1.02445 1.70024 1.43205 1.20239 1.24454 0.85701 0.79837 0.79395 0.78089 1.16631 1.21264 1.18970 1.21223 0.91199 0.99687 0.89488 1.21760 1.01904 0.91358 1.08808 0.86201 0.90852 0.91185 0.84931 0.87889 0.96165 0.88313 0.92052 0.79753 0.80995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 15 2 O -0.33 -7.21 10.50 -92.45 -0.97 -8.18 15 3 C 0.15 3.76 6.69 22.51 0.15 3.91 15 4 C -0.19 -5.63 9.99 22.37 0.22 -5.41 15 5 C -0.04 -1.55 9.44 22.25 0.21 -1.34 15 6 C -0.51 -16.33 5.61 22.28 0.13 -16.21 15 7 S 1.38 52.27 13.46 -56.49 -0.76 51.51 15 8 O -0.93 -47.67 16.89 -148.98 -2.52 -50.19 15 9 C -0.32 -14.87 4.71 71.24 0.34 -14.54 15 10 C -0.52 -29.91 9.68 25.60 0.25 -29.66 15 11 H 0.05 2.89 7.96 -2.91 -0.02 2.86 15 12 C 0.02 1.10 5.47 84.66 0.46 1.56 15 13 N -0.94 -58.21 13.96 21.45 0.30 -57.91 15 14 Si 0.95 43.95 27.47 68.60 1.88 45.83 15 15 H -0.24 -10.08 7.11 99.48 0.71 -9.37 15 16 H -0.29 -13.25 7.11 99.48 0.71 -12.54 15 17 H -0.27 -12.11 6.54 99.48 0.65 -11.45 15 18 C 0.00 0.06 9.75 22.25 0.22 0.28 15 19 C -0.22 -4.43 9.04 22.36 0.20 -4.23 15 20 H 0.12 0.81 8.14 -2.38 -0.02 0.79 15 21 H 0.07 0.59 7.66 -2.39 -0.02 0.57 15 22 H 0.07 0.61 7.66 -2.39 -0.02 0.60 15 23 H 0.13 3.68 8.06 -2.91 -0.02 3.66 15 24 H 0.10 4.16 7.45 -2.91 -0.02 4.14 15 25 H 0.02 1.00 7.20 -2.39 -0.02 0.98 15 26 H 0.10 3.83 7.57 -2.39 -0.02 3.82 15 27 H 0.27 15.53 8.31 -92.71 -0.77 14.76 15 28 H 0.19 2.39 8.06 -2.91 -0.02 2.37 15 29 H 0.17 2.01 6.30 -2.91 -0.02 1.99 15 Total: -1.00 -82.47 267.58 2.32 -80.15 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: 1.09 Total: 3.15 kcal Atomic # 6 Polarization: -67.65 SS G_CDS: 3.29 Total: -64.36 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.30 Total: -57.91 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: -3.49 Total: -58.37 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Atomic # 16 Polarization: 52.27 SS G_CDS: -0.76 Total: 51.51 kcal Total: -82.47 2.32 -80.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788332.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.030 kcal (2) G-P(sol) polarization free energy of solvation -82.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds