Wall clock time and date at job start Mon Mar 30 2020 03:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00396 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94540 * 180.26040 * 4 3 2 6 6 C 1.38271 * 120.05186 * 359.41290 * 5 4 3 7 7 S 1.76195 * 119.93946 * 180.32521 * 6 5 4 8 8 O 1.42097 * 103.00291 * 24.13506 * 7 6 5 9 9 C 1.81408 * 103.00228 * 270.28256 * 7 6 5 10 10 C 1.50699 * 109.46926 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00452 * 359.97438 * 10 9 7 12 12 C 1.37884 * 119.99657 * 180.02562 * 10 9 7 13 13 N 1.31513 * 120.00051 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99925 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46791 * 90.00252 * 14 12 10 16 16 H 1.48496 * 109.47062 * 210.00225 * 14 12 10 17 17 H 1.48500 * 109.47296 * 330.00353 * 14 12 10 18 18 C 1.38259 * 120.11303 * 0.60978 * 6 5 4 19 19 C 1.38146 * 120.05909 * 359.67357 * 18 6 5 20 20 H 1.09002 * 109.46662 * 59.99805 * 1 2 3 21 21 H 1.09005 * 109.47349 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47463 * 300.00468 * 1 2 3 23 23 H 1.08002 * 120.02291 * 359.97438 * 4 3 2 24 24 H 1.07995 * 119.96712 * 179.72331 * 5 4 3 25 25 H 1.09004 * 109.46867 * 300.00183 * 9 7 6 26 26 H 1.08996 * 109.47145 * 60.00032 * 9 7 6 27 27 H 0.96991 * 120.00041 * 179.97438 * 13 12 10 28 28 H 1.08006 * 119.97147 * 179.69567 * 18 6 5 29 29 H 1.07993 * 120.03340 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0049 6 6 3.3020 3.6757 -0.0014 7 16 4.1020 5.2455 -0.0031 8 8 5.3751 4.9550 -0.5636 9 6 4.2885 5.6105 1.7641 10 6 4.9680 6.9451 1.9324 11 1 5.2589 7.5164 1.0633 12 6 5.2191 7.4363 3.1960 13 7 5.8125 8.6007 3.3430 14 14 4.7165 6.4478 4.6993 15 1 5.8308 5.5503 5.0968 16 1 4.4029 7.3728 5.8178 17 1 3.5162 5.6344 4.3783 18 6 1.9212 3.6047 -0.0004 19 6 1.2916 2.3751 0.0001 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 4.0209 0.3797 -0.0005 24 1 5.1346 2.5748 0.0090 25 1 3.3056 5.6417 2.2343 26 1 4.8915 4.8336 2.2339 27 1 5.9888 8.9464 4.2319 28 1 1.3343 4.5114 -0.0003 29 1 0.2130 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082788334.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:41 Heat of formation + Delta-G solvation = -79.050446 kcal Electronic energy + Delta-G solvation = -14416.858075 eV Core-core repulsion = 11817.002863 eV Total energy + Delta-G solvation = -2599.855212 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.06127 -38.35267 -36.61519 -35.13497 -32.15384 -31.43425 -31.10227 -28.17562 -24.73302 -23.77023 -23.20090 -19.45441 -19.08465 -18.62022 -17.27986 -16.87974 -16.70704 -16.55202 -15.63714 -15.45963 -15.02953 -14.65675 -14.44162 -14.30845 -13.85930 -13.67862 -13.27089 -12.92671 -12.81724 -12.46033 -12.08768 -11.90313 -11.84443 -11.70125 -10.92068 -10.86284 -10.05112 -9.57006 -9.02863 -8.34751 -6.43338 0.01861 0.32778 1.16915 1.32792 1.34293 1.45963 2.12807 2.29511 2.32129 2.67895 2.96954 3.19293 3.80483 3.89452 4.27512 4.36682 4.43046 4.49725 4.60235 4.74106 4.74588 4.91564 4.98537 5.01464 5.24942 5.37068 5.47624 5.70252 6.01930 6.36194 6.62527 7.22715 8.80157 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.033290 B = 0.006337 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.883826 B = 4417.539718 C = 4862.127123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.334 6.334 3 C 0.150 3.850 4 C -0.186 4.186 5 C -0.043 4.043 6 C -0.507 4.507 7 S 1.380 4.620 8 O -0.931 6.931 9 C -0.324 4.324 10 C -0.524 4.524 11 H 0.047 0.953 12 C 0.019 3.981 13 N -0.940 5.940 14 Si 0.944 3.056 15 H -0.285 1.285 16 H -0.274 1.274 17 H -0.233 1.233 18 C 0.003 3.997 19 C -0.219 4.219 20 H 0.073 0.927 21 H 0.120 0.880 22 H 0.069 0.931 23 H 0.133 0.867 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.019 0.981 27 H 0.270 0.730 28 H 0.185 0.815 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.957 -14.283 -5.594 23.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.103 3.897 4 C -0.205 4.205 5 C -0.062 4.062 6 C -0.605 4.605 7 S 1.581 4.419 8 O -0.927 6.927 9 C -0.462 4.462 10 C -0.563 4.563 11 H 0.065 0.935 12 C -0.181 4.181 13 N -0.579 5.579 14 Si 0.767 3.233 15 H -0.212 1.212 16 H -0.199 1.199 17 H -0.156 1.156 18 C -0.016 4.016 19 C -0.238 4.238 20 H 0.091 0.909 21 H 0.138 0.862 22 H 0.088 0.912 23 H 0.151 0.849 24 H 0.122 0.878 25 H 0.119 0.881 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.202 0.798 29 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -17.535 -13.827 -6.273 23.195 hybrid contribution 1.769 -1.677 1.893 3.086 sum -15.766 -15.504 -4.380 22.542 Atomic orbital electron populations 1.23465 0.75723 1.05915 1.02930 1.86061 1.24191 1.26562 1.87918 1.19281 0.91986 0.85449 0.92940 1.20557 0.92848 0.98113 1.09026 1.20912 0.99255 0.92537 0.93545 1.27870 1.03540 1.14032 1.15048 1.68130 0.95198 0.91560 0.87005 1.92877 1.45363 1.82803 1.71704 1.25641 1.03406 0.99743 1.17373 1.20579 1.39585 1.02217 0.93880 0.93523 1.25913 0.94068 0.95668 1.02435 1.70019 1.43145 1.20323 1.24457 0.85742 0.80171 0.78886 0.78476 1.21171 1.19918 1.15605 1.21218 0.91235 0.99669 0.89497 1.21759 1.01893 0.91367 1.08831 0.90864 0.86199 0.91193 0.84913 0.87836 0.88105 0.96227 0.92060 0.79814 0.81032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 15 2 O -0.33 -7.18 10.50 -92.33 -0.97 -8.15 15 3 C 0.15 3.75 6.69 22.51 0.15 3.90 15 4 C -0.19 -5.59 9.99 22.37 0.22 -5.36 15 5 C -0.04 -1.52 9.44 22.26 0.21 -1.31 15 6 C -0.51 -16.24 5.61 22.28 0.13 -16.11 15 7 S 1.38 52.03 13.46 -56.49 -0.76 51.27 15 8 O -0.93 -47.52 16.90 -148.98 -2.52 -50.03 15 9 C -0.32 -14.78 4.71 71.24 0.34 -14.45 15 10 C -0.52 -29.81 9.68 25.60 0.25 -29.56 15 11 H 0.05 2.88 7.96 -2.91 -0.02 2.86 15 12 C 0.02 1.09 5.47 84.66 0.46 1.55 15 13 N -0.94 -58.29 13.96 21.45 0.30 -57.99 15 14 Si 0.94 43.86 27.47 68.60 1.88 45.74 15 15 H -0.29 -13.54 7.11 99.48 0.71 -12.84 15 16 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 17 H -0.23 -9.60 6.54 99.48 0.65 -8.95 15 18 C 0.00 0.06 9.75 22.25 0.22 0.28 15 19 C -0.22 -4.43 9.04 22.37 0.20 -4.23 15 20 H 0.07 0.59 7.66 -2.39 -0.02 0.57 15 21 H 0.12 0.80 8.14 -2.38 -0.02 0.78 15 22 H 0.07 0.61 7.66 -2.39 -0.02 0.59 15 23 H 0.13 3.66 8.06 -2.91 -0.02 3.64 15 24 H 0.10 4.14 7.46 -2.91 -0.02 4.12 15 25 H 0.10 3.94 7.20 -2.39 -0.02 3.92 15 26 H 0.02 0.94 7.57 -2.39 -0.02 0.93 15 27 H 0.27 15.55 8.31 -92.72 -0.77 14.78 15 28 H 0.18 2.40 8.06 -2.91 -0.02 2.38 15 29 H 0.17 2.01 6.30 -2.91 -0.02 1.99 15 Total: -1.00 -82.20 267.59 2.32 -79.88 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 1.09 Total: 3.32 kcal Atomic # 6 Polarization: -67.32 SS G_CDS: 3.29 Total: -64.04 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.30 Total: -57.99 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -3.49 Total: -58.18 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.74 kcal Atomic # 16 Polarization: 52.03 SS G_CDS: -0.76 Total: 51.27 kcal Total: -82.20 2.32 -79.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788334.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.831 kcal (2) G-P(sol) polarization free energy of solvation -82.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds