Wall clock time and date at job start Mon Mar 30 2020 03:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 S 1.76202 * 119.97711 * 180.02562 * 7 6 5 9 9 O 1.42099 * 102.99731 * 336.14519 * 8 7 6 10 10 C 1.81401 * 103.00091 * 89.99632 * 8 7 6 11 11 C 1.50694 * 109.46902 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00192 * 0.02562 * 11 10 8 13 13 C 1.37883 * 120.00146 * 180.02562 * 11 10 8 14 14 N 1.31513 * 119.99276 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00244 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47035 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47263 * 119.99686 * 15 13 11 18 18 H 1.48498 * 109.46707 * 239.99871 * 15 13 11 19 19 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 20 20 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 22 22 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 23 23 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 24 24 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 25 25 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 26 26 H 1.08991 * 109.46927 * 300.00217 * 10 8 7 27 27 H 1.09001 * 109.47009 * 60.00011 * 10 8 7 28 28 H 0.97006 * 119.99463 * 180.02562 * 14 13 11 29 29 H 1.07997 * 120.02798 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 16 5.8154 2.6119 0.0005 9 8 6.0665 3.8941 -0.5583 10 6 6.2229 2.6324 1.7681 11 6 7.7180 2.7134 1.9379 12 1 8.3590 2.7494 1.0695 13 6 8.2678 2.7415 3.2021 14 7 7.4871 2.6981 4.2596 15 14 10.1211 2.8426 3.4127 16 1 10.7697 2.8796 2.0774 17 1 10.4672 4.0748 4.1659 18 1 10.5996 1.6534 4.1622 19 6 3.4311 1.2848 0.0003 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 0.2128 2.3203 0.0108 24 1 1.3339 4.5114 0.0034 25 1 3.7922 4.6381 0.0022 26 1 5.7567 3.4980 2.2383 27 1 5.8524 1.7207 2.2369 28 1 7.8738 2.7183 5.1490 29 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082788342.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:48 Heat of formation + Delta-G solvation = -54.423541 kcal Electronic energy + Delta-G solvation = -14401.336988 eV Core-core repulsion = 11802.549679 eV Total energy + Delta-G solvation = -2598.787309 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -39.89924 -37.17205 -34.70344 -33.11261 -30.99684 -29.92578 -28.56173 -27.28593 -23.27535 -22.53107 -21.98124 -18.51075 -16.56660 -16.41041 -16.06319 -15.79651 -15.72801 -14.86584 -14.51630 -13.82753 -13.51849 -13.39039 -12.56944 -12.51137 -12.38326 -12.13237 -11.55543 -11.21496 -11.11977 -10.94014 -10.92862 -10.67556 -10.31788 -9.56823 -9.15883 -8.86375 -8.55981 -8.07293 -7.31489 -6.16366 -4.23788 1.25010 1.63593 2.68395 3.25858 3.33320 3.34733 3.39519 3.68992 4.05723 4.35674 4.81339 4.86596 5.03075 5.04352 5.08014 5.21458 5.34119 5.51895 5.65414 5.69777 6.11766 6.39160 6.53303 6.64751 6.82268 7.08602 7.18865 7.48697 7.68106 8.01730 8.80612 9.41054 10.95343 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.037290 B = 0.005814 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.681532 B = 4815.041716 C = 5130.233661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.104 3.896 4 C -0.189 4.189 5 C -0.100 4.100 6 C -0.094 4.094 7 C -0.403 4.403 8 S 1.279 4.721 9 O -0.871 6.871 10 C -0.255 4.255 11 C -0.517 4.517 12 H 0.065 0.935 13 C 0.068 3.932 14 N -0.885 5.885 15 Si 0.900 3.100 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.280 1.280 19 C -0.078 4.078 20 H 0.098 0.902 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.124 0.876 24 H 0.121 0.879 25 H 0.127 0.873 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.264 0.736 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.165 -6.421 -7.763 15.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.058 3.942 4 C -0.207 4.207 5 C -0.119 4.119 6 C -0.113 4.113 7 C -0.497 4.497 8 S 1.479 4.521 9 O -0.867 6.867 10 C -0.396 4.396 11 C -0.556 4.556 12 H 0.083 0.917 13 C -0.136 4.136 14 N -0.522 5.522 15 Si 0.727 3.273 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.206 1.206 19 C -0.098 4.098 20 H 0.116 0.884 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.142 0.858 24 H 0.139 0.861 25 H 0.145 0.855 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.536 -6.558 -8.400 15.705 hybrid contribution -0.609 2.015 1.546 2.612 sum -12.145 -4.542 -6.854 14.667 Atomic orbital electron populations 1.23004 0.78947 1.03650 1.01093 1.86066 1.20919 1.26936 1.89169 1.19114 0.92672 0.83942 0.98439 1.21248 0.99576 0.92647 1.07266 1.20993 0.94808 0.96869 0.99258 1.21088 0.93664 0.98570 0.97991 1.28321 1.21501 0.95504 1.04362 1.68962 0.80001 1.09058 0.94083 1.92989 1.78055 1.43812 1.71813 1.24973 1.02750 1.03297 1.08567 1.20482 0.88922 1.53159 0.93040 0.91668 1.24989 0.98665 0.94319 0.95664 1.69990 1.35175 1.48937 0.98120 0.86399 0.84508 0.77817 0.78592 1.19219 1.20848 1.20561 1.20121 0.90911 0.97523 1.01207 0.88388 0.92876 0.92961 0.85797 0.86084 0.85549 0.93970 0.90961 0.92673 0.83923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 15 2 O -0.32 -4.21 10.50 -19.41 -0.20 -4.41 15 3 C 0.10 1.56 6.69 -39.22 -0.26 1.30 15 4 C -0.19 -2.65 9.04 -39.43 -0.36 -3.01 15 5 C -0.10 -1.55 10.04 -39.61 -0.40 -1.94 15 6 C -0.09 -1.75 9.44 -39.56 -0.37 -2.13 15 7 C -0.40 -7.39 5.61 -39.61 -0.22 -7.62 15 8 S 1.28 25.50 13.46 -107.50 -1.45 24.05 15 9 O -0.87 -21.93 16.89 -35.23 -0.60 -22.53 15 10 C -0.26 -6.39 5.64 36.00 0.20 -6.19 15 11 C -0.52 -14.24 9.13 -34.44 -0.31 -14.56 15 12 H 0.07 1.73 7.71 -52.49 -0.40 1.32 15 13 C 0.07 1.91 5.46 -17.82 -0.10 1.82 15 14 N -0.88 -26.01 13.29 55.43 0.74 -25.27 15 15 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 15 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 19 C -0.08 -1.24 9.69 -39.43 -0.38 -1.62 15 20 H 0.10 0.63 8.14 -51.92 -0.42 0.21 15 21 H 0.05 0.43 7.65 -51.93 -0.40 0.04 15 22 H 0.05 0.40 7.68 -51.93 -0.40 0.00 15 23 H 0.12 1.35 6.30 -52.49 -0.33 1.02 15 24 H 0.12 1.54 8.06 -52.49 -0.42 1.11 15 25 H 0.13 2.53 7.45 -52.48 -0.39 2.14 15 26 H 0.04 1.18 8.14 -51.93 -0.42 0.76 15 27 H 0.07 1.76 8.14 -51.92 -0.42 1.34 15 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 29 H 0.14 1.86 8.06 -52.49 -0.42 1.43 15 LS Contribution 271.18 15.07 4.09 4.09 Total: -1.00 -35.50 271.18 -6.83 -42.33 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -3.17 Total: -1.72 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: -1.21 Total: -32.71 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.74 Total: -25.27 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.80 Total: -26.94 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 25.50 SS G_CDS: -1.45 Total: 24.05 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -35.50 -6.83 -42.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788342.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.095 kcal (2) G-P(sol) polarization free energy of solvation -35.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds