Wall clock time and date at job start Mon Mar 30 2020 03:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 S 1.76202 * 119.97711 * 180.02562 * 7 6 5 9 9 O 1.42099 * 102.99731 * 336.14519 * 8 7 6 10 10 C 1.81401 * 103.00091 * 89.99632 * 8 7 6 11 11 C 1.50694 * 109.46902 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00192 * 0.02562 * 11 10 8 13 13 C 1.37883 * 120.00146 * 180.02562 * 11 10 8 14 14 N 1.31513 * 119.99276 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00244 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47035 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47263 * 119.99686 * 15 13 11 18 18 H 1.48498 * 109.46707 * 239.99871 * 15 13 11 19 19 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 20 20 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 22 22 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 23 23 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 24 24 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 25 25 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 26 26 H 1.08991 * 109.46927 * 300.00217 * 10 8 7 27 27 H 1.09001 * 109.47009 * 60.00011 * 10 8 7 28 28 H 0.97006 * 119.99463 * 180.02562 * 14 13 11 29 29 H 1.07997 * 120.02798 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 16 5.8154 2.6119 0.0005 9 8 6.0665 3.8941 -0.5583 10 6 6.2229 2.6324 1.7681 11 6 7.7180 2.7134 1.9379 12 1 8.3590 2.7494 1.0695 13 6 8.2678 2.7415 3.2021 14 7 7.4871 2.6981 4.2596 15 14 10.1211 2.8426 3.4127 16 1 10.7697 2.8796 2.0774 17 1 10.4672 4.0748 4.1659 18 1 10.5996 1.6534 4.1622 19 6 3.4311 1.2848 0.0003 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 0.2128 2.3203 0.0108 24 1 1.3339 4.5114 0.0034 25 1 3.7922 4.6381 0.0022 26 1 5.7567 3.4980 2.2383 27 1 5.8524 1.7207 2.2369 28 1 7.8738 2.7183 5.1490 29 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082788342.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:45 Heat of formation + Delta-G solvation = -80.005238 kcal Electronic energy + Delta-G solvation = -14402.446294 eV Core-core repulsion = 11802.549679 eV Total energy + Delta-G solvation = -2599.896615 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.00862 -38.31517 -36.60747 -35.22467 -32.22999 -31.13394 -30.63505 -28.11079 -25.29352 -23.82333 -23.23446 -19.74354 -18.58382 -18.01685 -17.20824 -17.03527 -16.76733 -16.59694 -16.09689 -15.34769 -14.97657 -14.60161 -14.37036 -14.26796 -13.70759 -13.34805 -13.10091 -12.85812 -12.80034 -12.57219 -12.23474 -12.06468 -11.97811 -11.59647 -10.89128 -10.69121 -10.21906 -9.29200 -9.09954 -8.28913 -6.44169 -0.08432 0.37458 1.11871 1.40759 1.42007 1.56239 2.08229 2.37041 2.40956 2.66367 3.02260 3.18522 3.78969 3.98729 4.15265 4.31554 4.44134 4.48728 4.51383 4.77270 4.92329 4.98076 5.12617 5.16352 5.27566 5.35047 5.55002 5.60429 5.92595 6.42757 6.70396 7.25375 8.84087 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.037290 B = 0.005814 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.681532 B = 4815.041716 C = 5130.233661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.105 3.895 4 C -0.176 4.176 5 C -0.099 4.099 6 C -0.128 4.128 7 C -0.427 4.427 8 S 1.366 4.634 9 O -0.925 6.925 10 C -0.271 4.271 11 C -0.538 4.538 12 H 0.072 0.928 13 C 0.010 3.990 14 N -0.925 5.925 15 Si 0.968 3.032 16 H -0.256 1.256 17 H -0.284 1.284 18 H -0.265 1.265 19 C -0.083 4.083 20 H 0.123 0.877 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.164 0.836 24 H 0.149 0.851 25 H 0.098 0.902 26 H -0.004 1.004 27 H 0.071 0.929 28 H 0.267 0.733 29 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.541 -7.909 -8.575 17.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.059 3.941 4 C -0.195 4.195 5 C -0.118 4.118 6 C -0.147 4.147 7 C -0.523 4.523 8 S 1.567 4.433 9 O -0.921 6.921 10 C -0.410 4.410 11 C -0.577 4.577 12 H 0.090 0.910 13 C -0.191 4.191 14 N -0.563 5.563 15 Si 0.791 3.209 16 H -0.180 1.180 17 H -0.210 1.210 18 H -0.189 1.189 19 C -0.103 4.103 20 H 0.141 0.859 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.182 0.818 24 H 0.166 0.834 25 H 0.117 0.883 26 H 0.015 0.985 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.886 -8.054 -9.204 17.766 hybrid contribution -0.485 2.394 1.741 2.999 sum -13.370 -5.660 -7.463 16.325 Atomic orbital electron populations 1.23406 0.76346 1.05905 1.02273 1.86070 1.23538 1.25762 1.88643 1.19216 0.92520 0.85149 0.97224 1.21681 1.01586 0.91487 1.04698 1.21268 0.93456 0.98912 0.98188 1.21090 0.95610 0.97488 1.00521 1.27840 1.19871 0.96930 1.07671 1.68163 0.80601 1.06016 0.88496 1.92855 1.80828 1.46511 1.71928 1.25119 1.01652 1.01035 1.13172 1.20967 0.90446 1.52735 0.93570 0.91008 1.25993 1.03893 0.93797 0.95391 1.70112 1.37441 1.50081 0.98698 0.85346 0.78377 0.78065 0.79065 1.17967 1.21018 1.18944 1.20397 0.92286 0.97274 1.00297 0.85870 0.91947 0.91371 0.81839 0.83351 0.88330 0.98508 0.91107 0.92416 0.81366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 15 2 O -0.33 -7.49 10.50 -92.38 -0.97 -8.46 15 3 C 0.11 2.87 6.69 22.51 0.15 3.02 15 4 C -0.18 -4.36 9.04 22.37 0.20 -4.16 15 5 C -0.10 -2.90 10.04 22.25 0.22 -2.67 15 6 C -0.13 -4.84 9.44 22.28 0.21 -4.63 15 7 C -0.43 -15.75 5.61 22.25 0.12 -15.63 15 8 S 1.37 56.03 13.46 -56.49 -0.76 55.27 15 9 O -0.93 -48.28 16.89 -148.98 -2.52 -50.80 15 10 C -0.27 -14.24 5.64 71.23 0.40 -13.84 15 11 C -0.54 -30.50 9.13 25.60 0.23 -30.26 15 12 H 0.07 3.86 7.71 -2.91 -0.02 3.83 15 13 C 0.01 0.56 5.46 84.66 0.46 1.02 15 14 N -0.92 -55.90 13.29 21.45 0.28 -55.61 15 15 Si 0.97 43.77 29.54 68.60 2.03 45.80 15 16 H -0.26 -10.98 7.11 99.48 0.71 -10.27 15 17 H -0.28 -12.83 7.11 99.48 0.71 -12.13 15 18 H -0.26 -11.24 7.11 99.48 0.71 -10.53 15 19 C -0.08 -2.52 9.69 22.37 0.22 -2.31 15 20 H 0.12 1.03 8.14 -2.38 -0.02 1.01 15 21 H 0.06 0.74 7.65 -2.39 -0.02 0.72 15 22 H 0.07 0.71 7.68 -2.39 -0.02 0.70 15 23 H 0.16 2.71 6.30 -2.91 -0.02 2.69 15 24 H 0.15 3.41 8.06 -2.91 -0.02 3.39 15 25 H 0.10 4.20 7.45 -2.91 -0.02 4.18 15 26 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 15 27 H 0.07 3.62 8.14 -2.39 -0.02 3.60 15 28 H 0.27 15.02 8.31 -92.70 -0.77 14.25 15 29 H 0.17 4.05 8.06 -2.91 -0.02 4.03 15 Total: -1.00 -79.27 271.18 2.55 -76.73 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.15 Total: 5.23 kcal Atomic # 6 Polarization: -71.49 SS G_CDS: 3.34 Total: -68.15 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.28 Total: -55.61 kcal Atomic # 8 Polarization: -55.77 SS G_CDS: -3.49 Total: -59.26 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 56.03 SS G_CDS: -0.76 Total: 55.27 kcal Total: -79.27 2.55 -76.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788342.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.279 kcal (2) G-P(sol) polarization free energy of solvation -79.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds