Wall clock time and date at job start Mon Mar 30 2020 04:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99723 * 2 1 4 4 H 1.48502 * 109.46854 * 239.99889 * 3 2 1 5 5 H 1.48495 * 109.47331 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46976 * 120.00005 * 3 2 1 7 7 C 1.37871 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99537 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00422 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47499 * 179.97438 * 9 7 2 11 11 O 1.42897 * 109.47642 * 179.97438 * 10 9 7 12 12 C 1.36082 * 117.00509 * 179.97438 * 11 10 9 13 13 C 1.35111 * 120.55858 * 0.02562 * 12 11 10 14 14 O 1.34023 * 120.85822 * 180.02562 * 13 12 11 15 15 C 1.33779 * 122.05779 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.48084 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.47152 * 270.00186 * 16 15 14 18 18 C 1.34843 * 121.03405 * 0.25459 * 15 14 13 19 19 C 1.41730 * 119.01455 * 359.53341 * 18 15 14 20 20 O 1.22168 * 120.91994 * 180.22329 * 19 18 15 21 21 H 0.97001 * 119.99876 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47142 * 59.99849 * 9 7 2 23 23 H 1.09003 * 109.46817 * 300.00279 * 9 7 2 24 24 H 1.09004 * 109.47423 * 59.99891 * 10 9 7 25 25 H 1.09003 * 109.47452 * 300.00059 * 10 9 7 26 26 H 1.07999 * 119.56911 * 0.02562 * 13 12 11 27 27 H 1.08997 * 109.47198 * 149.99864 * 16 15 14 28 28 H 1.09008 * 109.47393 * 29.99581 * 16 15 14 29 29 H 0.96700 * 114.00311 * 180.02562 * 17 16 15 30 30 H 1.07993 * 120.48933 * 179.72500 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5309 -4.8996 0.0011 12 6 2.2720 -6.0409 0.0007 13 6 3.6219 -5.9833 0.0002 14 8 4.3577 -7.1035 -0.0008 15 6 3.7999 -8.3194 -0.0008 16 6 4.6831 -9.5405 -0.0025 17 8 4.9607 -9.9257 -1.3504 18 6 2.4599 -8.4696 -0.0050 19 6 1.6387 -7.3144 0.0007 20 8 0.4208 -7.4100 0.0012 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5566 0.8903 24 1 2.8720 -3.6043 0.8905 25 1 2.8720 -3.6043 -0.8894 26 1 4.1144 -5.0221 0.0006 27 1 4.1755 -10.3568 0.5114 28 1 5.6178 -9.3137 0.5103 29 1 5.5252 -10.7070 -1.4278 30 1 2.0190 -9.4554 -0.0095 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086880323.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:32 Heat of formation + Delta-G solvation = -119.393728 kcal Electronic energy + Delta-G solvation = -16396.451879 eV Core-core repulsion = 13352.094380 eV Total energy + Delta-G solvation = -3044.357499 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.95131 -38.96215 -37.84732 -37.34586 -33.44668 -32.92213 -31.49638 -30.02701 -27.11483 -25.59051 -23.81837 -22.64979 -21.07571 -18.61576 -18.23046 -18.13958 -16.86172 -16.35950 -16.29652 -15.37649 -15.10552 -15.06607 -14.59756 -14.51992 -14.10816 -13.80967 -13.49140 -12.65032 -12.34704 -11.97715 -11.88350 -11.02498 -10.94880 -10.73738 -10.63043 -10.06525 -9.79017 -9.61546 -9.53515 -9.32069 -8.46457 -7.99257 -6.11138 -4.17115 0.74854 1.21072 2.23616 3.27619 3.31046 3.33350 3.42702 3.47716 3.85799 4.32811 4.37344 4.55446 4.56202 4.68529 4.78868 5.24843 5.30768 5.42431 5.58219 5.83433 5.88014 6.04737 6.55668 7.01685 7.11669 7.34046 7.60714 7.61299 7.83814 7.99645 8.19698 8.88131 9.47339 11.00237 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.045608 B = 0.004437 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.781343 B = 6309.068722 C = 6827.035551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.053 3.947 11 O -0.281 6.281 12 C -0.027 4.027 13 C -0.040 4.040 14 O -0.197 6.197 15 C 0.130 3.870 16 C 0.129 3.871 17 O -0.560 6.560 18 C -0.288 4.288 19 C 0.404 3.596 20 O -0.467 6.467 21 H 0.265 0.735 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.204 0.796 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.391 0.609 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.747 -18.693 0.911 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.021 4.021 11 O -0.194 6.194 12 C -0.076 4.076 13 C -0.105 4.105 14 O -0.100 6.100 15 C 0.080 3.920 16 C 0.052 3.948 17 O -0.368 6.368 18 C -0.309 4.309 19 C 0.291 3.709 20 O -0.351 6.351 21 H 0.074 0.926 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.220 0.780 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.240 0.760 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 11.614 -18.021 0.786 21.454 hybrid contribution 0.871 0.673 0.134 1.109 sum 12.485 -17.348 0.919 21.394 Atomic orbital electron populations 1.69972 1.06129 1.27178 1.49226 1.24996 0.94906 0.99405 0.94825 0.86529 0.79479 0.82558 0.78685 1.20080 1.21082 1.20084 1.20907 0.92957 0.90136 1.52841 0.92367 1.19111 0.94095 0.88621 0.99244 1.23508 0.97712 0.81293 0.99592 1.86411 1.34377 1.11780 1.86853 1.21163 0.90978 0.91534 1.03960 1.23861 0.90947 0.88094 1.07559 1.82809 1.39914 1.11707 1.75549 1.22068 0.93005 0.84176 0.92706 1.20882 0.97928 0.90693 0.85325 1.86565 1.73713 1.51792 1.24720 1.22604 0.92583 1.01903 1.13781 1.17191 0.89874 0.86665 0.77138 1.90835 1.14597 1.88913 1.40727 0.92558 0.95158 0.95150 0.92838 0.92820 0.78015 0.89295 0.90640 0.75974 0.82156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.70 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.70 5.34 -27.89 -0.15 0.55 16 10 C 0.05 1.12 4.69 37.15 0.17 1.29 16 11 O -0.28 -6.16 10.00 -35.01 -0.35 -6.51 16 12 C -0.03 -0.50 6.72 -39.16 -0.26 -0.76 16 13 C -0.04 -0.58 10.43 29.62 0.31 -0.27 16 14 O -0.20 -2.47 9.74 7.84 0.08 -2.39 16 15 C 0.13 1.45 6.58 -35.51 -0.23 1.21 16 16 C 0.13 0.82 7.35 36.01 0.26 1.08 16 17 O -0.56 -4.01 13.64 -35.23 -0.48 -4.49 16 18 C -0.29 -3.80 9.62 -39.45 -0.38 -4.18 16 19 C 0.40 7.33 6.81 -36.72 -0.25 7.08 16 20 O -0.47 -10.24 17.75 -10.25 -0.18 -10.42 16 21 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 22 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.05 1.02 7.67 -51.93 -0.40 0.62 16 25 H 0.05 1.03 7.67 -51.93 -0.40 0.64 16 26 H 0.20 2.53 6.22 -52.49 -0.33 2.21 16 27 H 0.09 0.32 8.07 -51.93 -0.42 -0.10 16 28 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.39 0.58 9.12 45.56 0.42 1.00 16 30 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 274.66 15.07 4.14 4.14 Total: -1.00 -35.83 274.66 -4.38 -40.21 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: -2.36 Total: -3.42 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -0.94 Total: -7.36 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.74 Total: -25.89 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.94 Total: -23.81 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -35.83 -4.38 -40.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086880323.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.188 kcal (2) G-P(sol) polarization free energy of solvation -35.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds