Wall clock time and date at job start Mon Mar 30 2020 04:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99723 * 2 1 4 4 H 1.48502 * 109.46854 * 239.99889 * 3 2 1 5 5 H 1.48495 * 109.47331 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46976 * 120.00005 * 3 2 1 7 7 C 1.37871 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99537 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00422 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47499 * 179.97438 * 9 7 2 11 11 O 1.42897 * 109.47642 * 179.97438 * 10 9 7 12 12 C 1.36082 * 117.00509 * 179.97438 * 11 10 9 13 13 C 1.35111 * 120.55858 * 0.02562 * 12 11 10 14 14 O 1.34023 * 120.85822 * 180.02562 * 13 12 11 15 15 C 1.33779 * 122.05779 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.48084 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.47152 * 270.00186 * 16 15 14 18 18 C 1.34843 * 121.03405 * 0.25459 * 15 14 13 19 19 C 1.41730 * 119.01455 * 359.53341 * 18 15 14 20 20 O 1.22168 * 120.91994 * 180.22329 * 19 18 15 21 21 H 0.97001 * 119.99876 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47142 * 59.99849 * 9 7 2 23 23 H 1.09003 * 109.46817 * 300.00279 * 9 7 2 24 24 H 1.09004 * 109.47423 * 59.99891 * 10 9 7 25 25 H 1.09003 * 109.47452 * 300.00059 * 10 9 7 26 26 H 1.07999 * 119.56911 * 0.02562 * 13 12 11 27 27 H 1.08997 * 109.47198 * 149.99864 * 16 15 14 28 28 H 1.09008 * 109.47393 * 29.99581 * 16 15 14 29 29 H 0.96700 * 114.00311 * 180.02562 * 17 16 15 30 30 H 1.07993 * 120.48933 * 179.72500 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5309 -4.8996 0.0011 12 6 2.2720 -6.0409 0.0007 13 6 3.6219 -5.9833 0.0002 14 8 4.3577 -7.1035 -0.0008 15 6 3.7999 -8.3194 -0.0008 16 6 4.6831 -9.5405 -0.0025 17 8 4.9607 -9.9257 -1.3504 18 6 2.4599 -8.4696 -0.0050 19 6 1.6387 -7.3144 0.0007 20 8 0.4208 -7.4100 0.0012 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5566 0.8903 24 1 2.8720 -3.6043 0.8905 25 1 2.8720 -3.6043 -0.8894 26 1 4.1144 -5.0221 0.0006 27 1 4.1755 -10.3568 0.5114 28 1 5.6178 -9.3137 0.5103 29 1 5.5252 -10.7070 -1.4278 30 1 2.0190 -9.4554 -0.0095 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086880323.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:32 Heat of formation + Delta-G solvation = -147.818420 kcal Electronic energy + Delta-G solvation = -16397.684466 eV Core-core repulsion = 13352.094380 eV Total energy + Delta-G solvation = -3045.590086 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.12417 -40.33709 -39.28923 -37.88885 -35.52016 -33.95807 -32.97195 -31.81362 -27.93456 -27.37517 -25.34083 -23.76523 -22.84874 -20.02711 -19.43424 -18.69315 -18.39745 -17.87439 -17.57328 -16.68250 -16.55303 -16.51871 -16.04702 -15.35185 -15.27720 -15.03826 -14.92228 -14.33049 -13.87423 -13.63067 -13.08003 -12.73615 -12.69686 -12.43675 -11.82476 -11.66549 -11.49175 -11.14660 -10.92140 -10.67101 -10.60847 -9.36324 -8.26350 -6.41632 -0.35344 -0.01018 1.19953 1.41875 1.46498 1.54449 2.04789 2.22014 2.42339 3.08201 3.10896 3.25190 3.44630 3.86188 3.99797 4.17789 4.20910 4.24780 4.35568 4.50979 4.61081 4.70100 4.94307 5.29695 5.42132 5.66378 5.96080 6.02275 6.15844 6.60775 6.73983 6.87578 7.29342 8.86938 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.045608 B = 0.004437 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.781343 B = 6309.068722 C = 6827.035551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.026 3.974 10 C 0.067 3.933 11 O -0.322 6.322 12 C -0.084 4.084 13 C 0.015 3.985 14 O -0.185 6.185 15 C 0.148 3.852 16 C 0.132 3.868 17 O -0.585 6.585 18 C -0.298 4.298 19 C 0.388 3.612 20 O -0.536 6.536 21 H 0.266 0.734 22 H -0.007 1.007 23 H -0.006 1.006 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.229 0.771 27 H 0.124 0.876 28 H 0.105 0.895 29 H 0.416 0.584 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.966 -19.616 1.079 25.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.098 0.902 9 C -0.011 4.011 10 C -0.007 4.007 11 O -0.237 6.237 12 C -0.131 4.131 13 C -0.050 4.050 14 O -0.085 6.085 15 C 0.098 3.902 16 C 0.055 3.945 17 O -0.398 6.398 18 C -0.318 4.318 19 C 0.281 3.719 20 O -0.426 6.426 21 H 0.075 0.925 22 H 0.011 0.989 23 H 0.012 0.988 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.245 0.755 27 H 0.141 0.859 28 H 0.123 0.877 29 H 0.270 0.730 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 15.910 -19.004 0.951 24.803 hybrid contribution -0.286 0.804 0.070 0.856 sum 15.624 -18.200 1.021 24.008 Atomic orbital electron populations 1.70149 1.08360 1.28337 1.50565 1.26133 0.95779 1.04026 0.94097 0.85268 0.77988 0.76780 0.79592 1.18598 1.21191 1.18492 1.21391 0.94111 0.90546 1.52241 0.90160 1.18961 0.94687 0.91730 0.95759 1.23148 0.95957 0.79886 1.01660 1.86321 1.35923 1.12771 1.88652 1.21365 0.92524 0.90434 1.08826 1.24218 0.89478 0.89716 1.01608 1.82928 1.39497 1.12010 1.74109 1.23060 0.93285 0.84785 0.89051 1.21178 0.98658 0.88971 0.85699 1.86484 1.74744 1.53548 1.24983 1.22632 0.93025 1.01033 1.15111 1.17915 0.89771 0.88215 0.76013 1.90796 1.16888 1.89666 1.45217 0.92498 0.98902 0.98756 0.90438 0.90692 0.75507 0.85879 0.87740 0.72994 0.79897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.05 13.29 21.45 0.28 -57.76 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.98 43.14 29.54 68.60 2.03 45.17 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.55 -30.42 9.11 25.60 0.23 -30.19 16 8 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 9 C 0.03 1.44 5.34 29.84 0.16 1.60 16 10 C 0.07 2.86 4.69 71.98 0.34 3.20 16 11 O -0.32 -14.74 10.00 -80.12 -0.80 -15.54 16 12 C -0.08 -3.10 6.72 22.54 0.15 -2.95 16 13 C 0.02 0.41 10.43 67.10 0.70 1.11 16 14 O -0.18 -3.88 9.74 5.13 0.05 -3.83 16 15 C 0.15 2.76 6.58 24.91 0.16 2.92 16 16 C 0.13 0.98 7.35 71.24 0.52 1.50 16 17 O -0.59 -5.74 13.64 -148.98 -2.03 -7.78 16 18 C -0.30 -7.43 9.62 22.35 0.21 -7.22 16 19 C 0.39 14.56 6.81 24.13 0.16 14.72 16 20 O -0.54 -25.33 17.75 8.49 0.15 -25.18 16 21 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 22 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 23 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 24 H 0.08 2.85 7.67 -2.39 -0.02 2.84 16 25 H 0.08 2.80 7.67 -2.39 -0.02 2.78 16 26 H 0.23 4.79 6.22 -2.91 -0.02 4.77 16 27 H 0.12 0.18 8.07 -2.39 -0.02 0.16 16 28 H 0.10 0.26 8.14 -2.38 -0.02 0.24 16 29 H 0.42 -0.67 9.12 -74.06 -0.68 -1.34 16 30 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -84.32 274.66 3.28 -81.03 By element: Atomic # 1 Polarization: -1.65 SS G_CDS: 0.50 Total: -1.15 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 3.11 Total: -14.96 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.28 Total: -57.76 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -2.63 Total: -52.33 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -84.32 3.28 -81.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086880323.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.785 kcal (2) G-P(sol) polarization free energy of solvation -84.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds