Wall clock time and date at job start Mon Mar 30 2020 03:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86811 * 119.99957 * 2 1 4 4 H 1.48496 * 109.46998 * 269.99646 * 3 2 1 5 5 H 1.48501 * 109.46770 * 29.99547 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99748 * 3 2 1 7 7 C 1.38950 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99524 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00386 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99614 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00171 * 179.97438 * 10 9 7 13 13 O 1.42905 * 109.46935 * 180.02562 * 12 10 9 14 14 C 1.35961 * 116.99911 * 180.02562 * 13 12 10 15 15 C 1.38965 * 120.48003 * 0.25453 * 14 13 12 16 16 C 1.38662 * 118.40449 * 180.24344 * 15 14 13 17 17 C 1.38140 * 119.27290 * 359.49943 * 16 15 14 18 18 N 1.31943 * 120.90936 * 0.25920 * 17 16 15 19 19 C 1.31975 * 121.74014 * 359.97438 * 18 17 16 20 20 F 1.35100 * 119.68152 * 180.02562 * 19 18 17 21 21 H 0.97000 * 119.99859 * 0.02562 * 1 2 3 22 22 H 0.97005 * 120.00046 * 359.97438 * 9 7 2 23 23 H 1.08990 * 109.47169 * 60.00180 * 12 10 9 24 24 H 1.09002 * 109.47001 * 300.00159 * 12 10 9 25 25 H 1.08004 * 120.80093 * 359.97438 * 15 14 13 26 26 H 1.08002 * 120.36708 * 179.78440 * 16 15 14 27 27 H 1.08002 * 119.54796 * 180.23440 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 8 2.1725 -5.9490 0.0016 14 6 1.6529 -7.2054 0.0016 15 6 0.2768 -7.3991 -0.0041 16 6 -0.2064 -8.6987 0.0013 17 6 0.6876 -9.7518 0.0017 18 7 1.9892 -9.5358 0.0020 19 6 2.4904 -8.3149 0.0016 20 9 3.8303 -8.1418 0.0015 21 1 -0.4850 0.8401 -0.0004 22 1 0.3534 -2.3907 0.0005 23 1 0.6169 -4.9208 -0.8885 24 1 0.6175 -4.9204 0.8914 25 1 -0.4001 -6.5575 -0.0083 26 1 -1.2701 -8.8858 0.0006 27 1 0.3161 -10.7659 0.0021 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087542540.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:07 Heat of formation + Delta-G solvation = -75.370599 kcal Electronic energy + Delta-G solvation = -16137.604065 eV Core-core repulsion = 13003.987998 eV Total energy + Delta-G solvation = -3133.616067 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.070 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.79129 -40.57057 -38.78652 -37.48315 -34.08704 -32.33551 -31.46354 -30.54544 -28.23231 -24.93174 -23.57107 -23.23877 -19.67929 -18.56211 -18.18159 -17.70349 -17.23271 -16.50784 -15.79338 -15.43331 -15.16165 -14.83727 -14.40405 -13.90043 -13.63479 -13.49680 -12.98476 -12.88159 -12.60043 -11.79613 -11.66194 -11.34540 -11.07100 -10.47486 -10.34825 -9.97985 -9.92304 -9.65946 -8.59035 -8.41913 -8.13854 -6.55653 -3.97395 0.79698 0.95957 2.81957 3.09907 3.20909 3.27560 3.43739 3.58780 3.66116 4.10256 4.31096 4.46452 4.70931 4.83054 5.00776 5.06676 5.21145 5.50060 5.58775 5.66495 5.78190 5.96035 6.24371 7.14113 7.43311 7.49661 7.88260 8.42554 9.02251 9.32705 9.82950 10.61593 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.054906 B = 0.004706 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.835990 B = 5947.958376 C = 6442.650290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.438 3.562 11 O -0.570 6.570 12 C 0.047 3.953 13 O -0.268 6.268 14 C 0.071 3.929 15 C -0.147 4.147 16 C -0.140 4.140 17 C 0.084 3.916 18 N -0.479 5.479 19 C 0.280 3.720 20 F -0.102 7.102 21 H 0.274 0.726 22 H 0.394 0.606 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.153 0.847 26 H 0.146 0.854 27 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.935 -13.695 0.004 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.189 5.189 10 C 0.223 3.777 11 O -0.454 6.454 12 C -0.032 4.032 13 O -0.178 6.178 14 C 0.020 3.980 15 C -0.173 4.173 16 C -0.160 4.160 17 C -0.073 4.073 18 N -0.194 5.194 19 C 0.125 3.875 20 F -0.081 7.081 21 H 0.084 0.916 22 H 0.228 0.772 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.170 0.830 26 H 0.164 0.836 27 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.406 -14.123 0.011 14.794 hybrid contribution -0.889 1.572 -0.012 1.806 sum -5.295 -12.550 -0.001 13.622 Atomic orbital electron populations 1.69601 1.06004 1.28532 1.49752 1.25303 0.95699 0.99875 0.96803 0.85795 0.79282 0.80334 0.78557 1.20217 1.20773 1.19229 1.19739 0.93538 0.81712 1.48136 0.87585 1.41678 1.09257 1.04047 1.63962 1.19209 0.88357 0.83916 0.86255 1.90599 1.13390 1.86585 1.54790 1.22662 0.91936 0.86099 1.02464 1.86333 1.34333 1.10177 1.86982 1.19977 0.92648 0.86334 0.99032 1.21765 0.93230 0.99496 1.02840 1.22025 1.01889 0.92146 0.99918 1.22373 0.86119 1.00079 0.98693 1.67083 1.17365 1.21075 1.13839 1.17440 0.78929 0.87475 1.03651 1.91662 1.27884 1.95156 1.93386 0.91610 0.77246 0.90001 0.90001 0.82977 0.83641 0.81520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.45 13.05 55.50 0.72 -22.73 15 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 15 3 Si 0.93 20.46 29.55 -169.99 -5.02 15.44 15 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 15 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 7 C -0.30 -8.21 9.68 -14.94 -0.14 -8.36 15 8 H 0.11 3.04 7.16 -52.48 -0.38 2.67 15 9 N -0.55 -13.49 5.29 -10.96 -0.06 -13.54 15 10 C 0.44 10.32 7.86 -10.99 -0.09 10.23 15 11 O -0.57 -16.07 16.08 -14.37 -0.23 -16.30 15 12 C 0.05 0.81 5.24 36.00 0.19 1.00 15 13 O -0.27 -5.06 9.55 -39.53 -0.38 -5.44 15 14 C 0.07 1.09 6.71 -39.02 -0.26 0.83 15 15 C -0.15 -1.66 9.14 -39.16 -0.36 -2.02 15 16 C -0.14 -1.24 10.10 -39.46 -0.40 -1.64 15 17 C 0.08 0.83 11.17 -17.54 -0.20 0.64 15 18 N -0.48 -6.72 10.37 -13.48 -0.14 -6.86 15 19 C 0.28 4.50 8.43 -17.20 -0.14 4.36 15 20 F -0.10 -1.83 17.14 2.25 0.04 -1.79 15 21 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 22 H 0.39 8.90 7.90 -40.82 -0.32 8.58 15 23 H 0.08 1.15 7.68 -51.93 -0.40 0.76 15 24 H 0.08 1.16 7.71 -51.93 -0.40 0.75 15 25 H 0.15 1.38 6.45 -52.48 -0.34 1.04 15 26 H 0.15 0.76 8.06 -52.49 -0.42 0.34 15 27 H 0.17 1.04 8.06 -52.49 -0.42 0.62 15 LS Contribution 257.50 15.07 3.88 3.88 Total: -1.00 -32.77 257.50 -4.50 -37.27 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -1.82 Total: 4.45 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -1.50 Total: 5.62 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.53 Total: -43.13 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.61 Total: -21.74 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.77 -4.50 -37.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087542540.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.099 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds