Wall clock time and date at job start Mon Mar 30 2020 03:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86811 * 119.99957 * 2 1 4 4 H 1.48496 * 109.46998 * 269.99646 * 3 2 1 5 5 H 1.48501 * 109.46770 * 29.99547 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99748 * 3 2 1 7 7 C 1.38950 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99524 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00386 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99614 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00171 * 179.97438 * 10 9 7 13 13 O 1.42905 * 109.46935 * 180.02562 * 12 10 9 14 14 C 1.35961 * 116.99911 * 180.02562 * 13 12 10 15 15 C 1.38965 * 120.48003 * 0.25453 * 14 13 12 16 16 C 1.38662 * 118.40449 * 180.24344 * 15 14 13 17 17 C 1.38140 * 119.27290 * 359.49943 * 16 15 14 18 18 N 1.31943 * 120.90936 * 0.25920 * 17 16 15 19 19 C 1.31975 * 121.74014 * 359.97438 * 18 17 16 20 20 F 1.35100 * 119.68152 * 180.02562 * 19 18 17 21 21 H 0.97000 * 119.99859 * 0.02562 * 1 2 3 22 22 H 0.97005 * 120.00046 * 359.97438 * 9 7 2 23 23 H 1.08990 * 109.47169 * 60.00180 * 12 10 9 24 24 H 1.09002 * 109.47001 * 300.00159 * 12 10 9 25 25 H 1.08004 * 120.80093 * 359.97438 * 15 14 13 26 26 H 1.08002 * 120.36708 * 179.78440 * 16 15 14 27 27 H 1.08002 * 119.54796 * 180.23440 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 8 2.1725 -5.9490 0.0016 14 6 1.6529 -7.2054 0.0016 15 6 0.2768 -7.3991 -0.0041 16 6 -0.2064 -8.6987 0.0013 17 6 0.6876 -9.7518 0.0017 18 7 1.9892 -9.5358 0.0020 19 6 2.4904 -8.3149 0.0016 20 9 3.8303 -8.1418 0.0015 21 1 -0.4850 0.8401 -0.0004 22 1 0.3534 -2.3907 0.0005 23 1 0.6169 -4.9208 -0.8885 24 1 0.6175 -4.9204 0.8914 25 1 -0.4001 -6.5575 -0.0083 26 1 -1.2701 -8.8858 0.0006 27 1 0.3161 -10.7659 0.0021 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087542540.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:07 Heat of formation + Delta-G solvation = -99.791374 kcal Electronic energy + Delta-G solvation = -16138.663029 eV Core-core repulsion = 13003.987998 eV Total energy + Delta-G solvation = -3134.675031 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.070 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.99358 -41.63413 -40.31362 -38.96758 -36.08192 -33.43956 -33.24615 -31.62315 -29.63266 -26.71618 -24.63962 -24.26516 -21.43788 -20.11025 -19.68573 -18.78482 -18.40756 -17.71695 -17.51710 -16.74954 -16.66218 -16.04453 -15.88251 -15.36947 -15.11726 -14.79544 -14.44215 -14.05572 -13.62682 -13.57454 -13.01197 -12.99875 -12.49557 -12.46215 -12.13960 -11.60690 -10.89639 -10.81412 -10.52328 -10.12507 -9.47247 -8.54390 -6.04084 -0.13040 0.05761 1.34492 1.40837 1.51010 1.65539 1.86814 2.29730 2.54439 2.58433 3.11537 3.15030 3.42929 3.66901 3.90622 4.02306 4.16956 4.23277 4.30345 4.69513 4.82294 4.99840 5.34558 5.36646 5.85634 6.07359 6.49006 6.59459 7.02909 7.39457 7.95563 8.62363 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.054906 B = 0.004706 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.835990 B = 5947.958376 C = 6442.650290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.004 4.004 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.267 1.267 6 H -0.275 1.275 7 C -0.340 4.340 8 H 0.078 0.922 9 N -0.554 5.554 10 C 0.430 3.570 11 O -0.628 6.628 12 C 0.061 3.939 13 O -0.311 6.311 14 C 0.044 3.956 15 C -0.138 4.138 16 C -0.115 4.115 17 C 0.091 3.909 18 N -0.502 5.502 19 C 0.237 3.763 20 F -0.130 7.130 21 H 0.282 0.718 22 H 0.403 0.597 23 H 0.119 0.881 24 H 0.119 0.881 25 H 0.181 0.819 26 H 0.198 0.802 27 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.106 -14.549 -0.016 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.205 4.205 3 Si 0.816 3.184 4 H -0.195 1.195 5 H -0.191 1.191 6 H -0.200 1.200 7 C -0.469 4.469 8 H 0.096 0.904 9 N -0.192 5.192 10 C 0.217 3.783 11 O -0.515 6.515 12 C -0.017 4.017 13 O -0.223 6.223 14 C -0.006 4.006 15 C -0.164 4.164 16 C -0.134 4.134 17 C -0.067 4.067 18 N -0.217 5.217 19 C 0.085 3.915 20 F -0.110 7.110 21 H 0.091 0.909 22 H 0.238 0.762 23 H 0.137 0.863 24 H 0.136 0.864 25 H 0.198 0.802 26 H 0.215 0.785 27 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.614 -14.984 -0.010 16.807 hybrid contribution -0.045 1.671 -0.006 1.672 sum -7.658 -13.313 -0.017 15.358 Atomic orbital electron populations 1.69636 1.06664 1.29732 1.49052 1.26022 0.96604 1.02257 0.95645 0.84928 0.77899 0.76735 0.78796 1.19489 1.19104 1.20014 1.19656 0.92792 0.83664 1.50831 0.90431 1.41673 1.09569 1.03929 1.64026 1.20336 0.88097 0.85831 0.84009 1.90559 1.16250 1.87828 1.56832 1.22517 0.90799 0.82532 1.05861 1.86246 1.35992 1.11735 1.88341 1.20163 0.94446 0.84479 1.01485 1.22201 0.91386 1.01775 1.01029 1.22606 1.04179 0.90388 0.96259 1.23296 0.84825 1.02645 0.95894 1.67125 1.19686 1.20160 1.14702 1.17756 0.78270 0.88787 1.06724 1.91570 1.30000 1.95424 1.93996 0.90878 0.76179 0.86347 0.86363 0.80223 0.78508 0.77329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.68 13.05 21.66 0.28 -46.39 15 2 C 0.00 -0.21 5.50 84.93 0.47 0.26 15 3 Si 0.99 41.73 29.55 68.60 2.03 43.76 15 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 15 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 6 H -0.28 -11.81 7.11 99.48 0.71 -11.11 15 7 C -0.34 -18.97 9.68 84.04 0.81 -18.16 15 8 H 0.08 4.69 7.16 -2.91 -0.02 4.67 15 9 N -0.55 -27.43 5.29 -306.99 -1.62 -29.05 15 10 C 0.43 20.69 7.86 87.66 0.69 21.37 15 11 O -0.63 -37.16 16.08 15.95 0.26 -36.90 15 12 C 0.06 2.01 5.24 71.23 0.37 2.39 15 13 O -0.31 -11.91 9.55 -74.08 -0.71 -12.61 15 14 C 0.04 1.32 6.71 22.63 0.15 1.47 15 15 C -0.14 -2.59 9.14 22.55 0.21 -2.38 15 16 C -0.12 -1.42 10.10 22.35 0.23 -1.19 15 17 C 0.09 1.45 11.17 84.65 0.95 2.39 15 18 N -0.50 -13.55 10.37 -196.56 -2.04 -15.59 15 19 C 0.24 7.80 8.43 84.86 0.72 8.52 15 20 F -0.13 -5.07 17.14 44.97 0.77 -4.30 15 21 H 0.28 13.44 8.31 -92.71 -0.77 12.67 15 22 H 0.40 18.03 7.90 -92.70 -0.73 17.30 15 23 H 0.12 3.00 7.68 -2.39 -0.02 2.99 15 24 H 0.12 3.00 7.71 -2.39 -0.02 2.99 15 25 H 0.18 2.30 6.45 -2.91 -0.02 2.28 15 26 H 0.20 0.49 8.06 -2.91 -0.02 0.47 15 27 H 0.21 1.45 8.06 -2.91 -0.02 1.43 15 Total: -1.00 -76.86 257.50 4.05 -72.81 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.49 Total: 13.61 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 4.59 Total: 14.68 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -3.38 Total: -91.04 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -0.45 Total: -49.52 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.77 Total: -4.30 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -76.86 4.05 -72.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087542540.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.986 kcal (2) G-P(sol) polarization free energy of solvation -76.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds