Wall clock time and date at job start Mon Mar 30 2020 03:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00156 * 2 1 4 4 H 1.48497 * 109.47573 * 270.00415 * 3 2 1 5 5 H 1.48506 * 109.47209 * 30.00374 * 3 2 1 6 6 H 1.48500 * 109.47205 * 150.00307 * 3 2 1 7 7 C 1.37881 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00000 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99853 * 179.97438 * 7 2 1 10 10 H 1.08998 * 109.47151 * 59.99729 * 9 7 2 11 11 N 1.46897 * 109.47288 * 299.99657 * 9 7 2 12 12 C 1.50695 * 109.46923 * 179.97438 * 9 7 2 13 13 C 1.38221 * 119.98763 * 100.02515 * 12 9 7 14 14 C 1.38433 * 119.97878 * 179.97438 * 13 12 9 15 15 F 1.35103 * 120.03027 * 180.02562 * 14 13 12 16 16 C 1.38486 * 119.94657 * 0.02562 * 14 13 12 17 17 C 1.38178 * 119.97195 * 359.74487 * 16 14 13 18 18 C 1.38224 * 119.99009 * 279.99960 * 12 9 7 19 19 N 1.48007 * 119.97156 * 359.97438 * 18 12 9 20 20 O 1.21803 * 119.99745 * 180.02562 * 19 18 12 21 21 O 1.21799 * 120.00052 * 359.72905 * 19 18 12 22 22 H 0.96999 * 119.99879 * 359.97438 * 1 2 3 23 23 H 1.00897 * 111.00118 * 176.04426 * 11 9 7 24 24 H 1.00897 * 111.00276 * 300.00651 * 11 9 7 25 25 H 1.08000 * 120.00934 * 359.97438 * 13 12 9 26 26 H 1.08000 * 120.01477 * 180.02562 * 16 14 13 27 27 H 1.08006 * 119.98266 * 180.25546 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8752 -0.6805 0.8888 11 7 4.0008 -0.5015 -1.2006 12 6 4.0138 -2.6149 -0.0010 13 6 4.4401 -3.1971 -1.1799 14 6 4.9019 -4.5021 -1.1795 15 9 5.3193 -5.0720 -2.3312 16 6 4.9357 -5.2231 0.0024 17 6 4.5135 -4.6374 1.1806 18 6 4.0485 -3.3354 1.1781 19 7 3.5928 -2.7105 2.4401 20 8 3.6237 -3.3448 3.4795 21 8 3.1921 -1.5603 2.4402 22 1 -0.4850 0.8400 0.0004 23 1 5.0073 -0.4314 -1.1924 24 1 3.6769 -0.9588 -2.0396 25 1 4.4128 -2.6340 -2.1011 26 1 5.2962 -6.2411 0.0041 27 1 4.5437 -5.1982 2.1031 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095683230.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:21 Heat of formation + Delta-G solvation = -9.904719 kcal Electronic energy + Delta-G solvation = -17234.315089 eV Core-core repulsion = 14103.537836 eV Total energy + Delta-G solvation = -3130.777253 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.070 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.19486 -41.57432 -39.17310 -36.10620 -34.96748 -32.09970 -31.35874 -30.24800 -26.83300 -25.70030 -23.67044 -22.07380 -20.73927 -18.70417 -18.03242 -17.52003 -17.20879 -16.60438 -16.28026 -15.81839 -15.07170 -14.52023 -14.25496 -13.98873 -13.59374 -13.46533 -12.65525 -12.46098 -12.07586 -11.50955 -10.78163 -10.72204 -10.65585 -10.39028 -10.30581 -9.78068 -9.52436 -9.21348 -8.81194 -8.57870 -8.01358 -6.10167 -4.20331 0.20776 1.01406 1.73597 2.03454 3.32861 3.58866 3.59165 3.72462 3.91625 4.45906 4.56103 4.60300 4.88508 4.94155 5.14450 5.43107 5.59678 5.67774 5.77320 5.91440 5.96562 6.43403 6.69415 7.07877 7.40770 7.84705 8.09585 8.37194 8.43227 8.80648 9.50046 10.98497 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.024115 B = 0.010390 C = 0.008163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.830166 B = 2694.164462 C = 3429.362341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.092 3.908 3 Si 0.940 3.060 4 H -0.282 1.282 5 H -0.315 1.315 6 H -0.270 1.270 7 C -0.502 4.502 8 H 0.067 0.933 9 C 0.199 3.801 10 H 0.098 0.902 11 N -0.839 5.839 12 C 0.024 3.976 13 C -0.170 4.170 14 C 0.149 3.851 15 F -0.130 7.130 16 C -0.180 4.180 17 C -0.027 4.027 18 C -0.055 4.055 19 N 0.029 4.971 20 O -0.221 6.221 21 O -0.092 6.092 22 H 0.267 0.733 23 H 0.314 0.686 24 H 0.335 0.665 25 H 0.152 0.848 26 H 0.150 0.850 27 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.273 -7.828 -1.883 13.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.114 4.114 3 Si 0.771 3.229 4 H -0.208 1.208 5 H -0.244 1.244 6 H -0.195 1.195 7 C -0.541 4.541 8 H 0.085 0.915 9 C 0.090 3.910 10 H 0.115 0.885 11 N -0.370 5.370 12 C 0.020 3.980 13 C -0.190 4.190 14 C 0.130 3.870 15 F -0.108 7.108 16 C -0.199 4.199 17 C -0.046 4.046 18 C -0.140 4.140 19 N 0.544 4.456 20 O -0.418 6.418 21 O -0.320 6.320 22 H 0.077 0.923 23 H 0.126 0.874 24 H 0.151 0.849 25 H 0.170 0.830 26 H 0.168 0.832 27 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 10.952 -7.555 -2.169 13.481 hybrid contribution 0.715 -0.266 -0.224 0.796 sum 11.667 -7.821 -2.393 14.249 Atomic orbital electron populations 1.69923 1.06892 1.27833 1.47840 1.24906 0.94557 1.00125 0.91792 0.85808 0.78832 0.80480 0.77759 1.20786 1.24405 1.19495 1.20310 0.85485 0.94743 1.53523 0.91525 1.19526 0.97688 0.81734 0.92059 0.88528 1.59394 1.13214 1.58396 1.06043 1.21320 0.86890 1.00834 0.88994 1.20997 1.04173 0.94137 0.99678 1.17934 0.95466 0.91750 0.81883 1.91533 1.87159 1.84696 1.47427 1.20916 1.06804 1.01716 0.90473 1.20792 0.92417 0.91879 0.99544 1.20940 1.11801 0.95497 0.85742 1.43325 0.99216 1.01241 1.01832 1.94442 1.62114 1.64359 1.20861 1.94639 1.44130 1.00853 1.92411 0.92312 0.87381 0.84938 0.83036 0.83213 0.82706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.96 55.43 0.77 -25.86 15 2 C 0.09 2.59 5.47 -17.82 -0.10 2.49 15 3 Si 0.94 23.24 26.03 -169.99 -4.42 18.81 15 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 5 H -0.31 -7.94 7.11 56.52 0.40 -7.54 15 6 H -0.27 -6.48 6.54 56.52 0.37 -6.11 15 7 C -0.50 -13.38 7.99 -34.44 -0.28 -13.66 15 8 H 0.07 1.98 7.98 -52.49 -0.42 1.56 15 9 C 0.20 4.32 1.63 -70.02 -0.11 4.20 15 10 H 0.10 2.26 4.92 -51.93 -0.26 2.00 15 11 N -0.84 -15.91 6.24 -6.65 -0.04 -15.95 15 12 C 0.02 0.44 5.01 -104.64 -0.52 -0.09 15 13 C -0.17 -2.61 9.23 -39.52 -0.36 -2.98 15 14 C 0.15 2.02 7.30 -39.42 -0.29 1.74 15 15 F -0.13 -1.67 17.27 2.25 0.04 -1.63 15 16 C -0.18 -2.20 10.03 -39.51 -0.40 -2.60 15 17 C -0.03 -0.39 9.55 -39.59 -0.38 -0.77 15 18 C -0.06 -1.01 6.84 -79.95 -0.55 -1.56 15 19 N 0.03 0.61 4.45 33.96 0.15 0.77 15 20 O -0.22 -4.53 18.45 -29.46 -0.54 -5.07 15 21 O -0.09 -2.18 14.32 -29.46 -0.42 -2.60 15 22 H 0.27 7.55 8.31 -40.82 -0.34 7.21 15 23 H 0.31 4.94 9.06 -39.29 -0.36 4.58 15 24 H 0.34 5.90 7.28 -39.29 -0.29 5.61 15 25 H 0.15 2.08 6.25 -52.49 -0.33 1.76 15 26 H 0.15 1.33 8.06 -52.49 -0.42 0.91 15 27 H 0.16 1.89 7.61 -52.48 -0.40 1.49 15 LS Contribution 243.99 15.07 3.68 3.68 Total: -1.00 -30.65 243.99 -5.41 -36.06 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -1.63 Total: 5.01 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -2.98 Total: -13.22 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.88 Total: -41.04 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.97 Total: -7.67 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.42 Total: 18.81 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.65 -5.41 -36.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095683230.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.155 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds