Wall clock time and date at job start Mon Mar 30 2020 03:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00156 * 2 1 4 4 H 1.48497 * 109.47573 * 270.00415 * 3 2 1 5 5 H 1.48506 * 109.47209 * 30.00374 * 3 2 1 6 6 H 1.48500 * 109.47205 * 150.00307 * 3 2 1 7 7 C 1.37881 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00000 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99853 * 179.97438 * 7 2 1 10 10 H 1.08998 * 109.47151 * 59.99729 * 9 7 2 11 11 N 1.46897 * 109.47288 * 299.99657 * 9 7 2 12 12 C 1.50695 * 109.46923 * 179.97438 * 9 7 2 13 13 C 1.38221 * 119.98763 * 100.02515 * 12 9 7 14 14 C 1.38433 * 119.97878 * 179.97438 * 13 12 9 15 15 F 1.35103 * 120.03027 * 180.02562 * 14 13 12 16 16 C 1.38486 * 119.94657 * 0.02562 * 14 13 12 17 17 C 1.38178 * 119.97195 * 359.74487 * 16 14 13 18 18 C 1.38224 * 119.99009 * 279.99960 * 12 9 7 19 19 N 1.48007 * 119.97156 * 359.97438 * 18 12 9 20 20 O 1.21803 * 119.99745 * 180.02562 * 19 18 12 21 21 O 1.21799 * 120.00052 * 359.72905 * 19 18 12 22 22 H 0.96999 * 119.99879 * 359.97438 * 1 2 3 23 23 H 1.00897 * 111.00118 * 176.04426 * 11 9 7 24 24 H 1.00897 * 111.00276 * 300.00651 * 11 9 7 25 25 H 1.08000 * 120.00934 * 359.97438 * 13 12 9 26 26 H 1.08000 * 120.01477 * 180.02562 * 16 14 13 27 27 H 1.08006 * 119.98266 * 180.25546 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8752 -0.6805 0.8888 11 7 4.0008 -0.5015 -1.2006 12 6 4.0138 -2.6149 -0.0010 13 6 4.4401 -3.1971 -1.1799 14 6 4.9019 -4.5021 -1.1795 15 9 5.3193 -5.0720 -2.3312 16 6 4.9357 -5.2231 0.0024 17 6 4.5135 -4.6374 1.1806 18 6 4.0485 -3.3354 1.1781 19 7 3.5928 -2.7105 2.4401 20 8 3.6237 -3.3448 3.4795 21 8 3.1921 -1.5603 2.4402 22 1 -0.4850 0.8400 0.0004 23 1 5.0073 -0.4314 -1.1924 24 1 3.6769 -0.9588 -2.0396 25 1 4.4128 -2.6340 -2.1011 26 1 5.2962 -6.2411 0.0041 27 1 4.5437 -5.1982 2.1031 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095683230.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:21 Heat of formation + Delta-G solvation = -31.630419 kcal Electronic energy + Delta-G solvation = -17235.257186 eV Core-core repulsion = 14103.537836 eV Total energy + Delta-G solvation = -3131.719350 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.070 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.27587 -43.13973 -40.51733 -37.70678 -36.57731 -34.09711 -32.67225 -31.58406 -28.64224 -27.22361 -25.16604 -23.44681 -22.30986 -20.16682 -19.55664 -19.22466 -18.61293 -18.29564 -17.55758 -16.92605 -16.73767 -16.08357 -15.74166 -15.44552 -14.88938 -14.69264 -14.30047 -13.92659 -13.80372 -12.93588 -12.67493 -12.46300 -12.27103 -12.14841 -12.00770 -11.65507 -11.38355 -10.71873 -10.43103 -10.17439 -9.57870 -8.24657 -6.36194 -1.19842 -0.17282 0.26310 0.57731 1.54731 1.60685 1.73691 2.08395 2.54843 2.75693 3.10883 3.27776 3.39381 3.72121 3.74550 4.05125 4.20020 4.51122 4.56941 4.61132 4.74857 5.01071 5.24996 5.43962 5.62239 6.02670 6.32539 6.64149 6.73848 6.87574 7.38352 8.88815 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.024115 B = 0.010390 C = 0.008163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.830166 B = 2694.164462 C = 3429.362341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.037 3.963 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.326 1.326 6 H -0.261 1.261 7 C -0.492 4.492 8 H 0.021 0.979 9 C 0.209 3.791 10 H 0.078 0.922 11 N -0.842 5.842 12 C 0.000 4.000 13 C -0.171 4.171 14 C 0.165 3.835 15 F -0.118 7.118 16 C -0.150 4.150 17 C -0.019 4.019 18 C -0.079 4.079 19 N 0.032 4.968 20 O -0.183 6.183 21 O -0.176 6.176 22 H 0.266 0.734 23 H 0.338 0.662 24 H 0.345 0.655 25 H 0.165 0.835 26 H 0.199 0.801 27 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.149 -10.210 -2.734 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.163 4.163 3 Si 0.827 3.173 4 H -0.196 1.196 5 H -0.256 1.256 6 H -0.186 1.186 7 C -0.530 4.530 8 H 0.040 0.960 9 C 0.099 3.901 10 H 0.095 0.905 11 N -0.376 5.376 12 C -0.004 4.004 13 C -0.190 4.190 14 C 0.145 3.855 15 F -0.096 7.096 16 C -0.169 4.169 17 C -0.038 4.038 18 C -0.164 4.164 19 N 0.543 4.457 20 O -0.395 6.395 21 O -0.385 6.385 22 H 0.074 0.926 23 H 0.153 0.847 24 H 0.161 0.839 25 H 0.182 0.818 26 H 0.216 0.784 27 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 13.820 -9.795 -3.112 17.223 hybrid contribution -0.009 0.067 0.053 0.086 sum 13.812 -9.727 -3.059 17.168 Atomic orbital electron populations 1.70054 1.08558 1.28276 1.51606 1.25690 0.95044 1.03397 0.92122 0.84898 0.77703 0.76688 0.78041 1.19639 1.25617 1.18597 1.20408 0.88462 0.92409 1.51718 0.96046 1.18960 0.94527 0.84369 0.92292 0.90487 1.59009 1.15084 1.58119 1.05360 1.21005 0.89199 0.99652 0.90557 1.21084 1.03796 0.95323 0.98828 1.17945 0.93959 0.90923 0.82693 1.91579 1.86723 1.84287 1.47035 1.21416 1.03735 1.03190 0.88582 1.21181 0.91060 0.89934 1.01634 1.21258 1.13793 0.97201 0.84100 1.43800 0.98162 1.00951 1.02826 1.94375 1.59546 1.63591 1.21968 1.94674 1.48397 1.02367 1.93084 0.92582 0.84730 0.83927 0.81753 0.78403 0.80011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.75 13.96 21.45 0.30 -59.45 15 2 C 0.04 2.17 5.47 84.66 0.46 2.64 15 3 Si 1.00 49.44 26.03 68.60 1.79 51.23 15 4 H -0.27 -12.78 7.11 99.48 0.71 -12.08 15 5 H -0.33 -16.56 7.11 99.48 0.71 -15.85 15 6 H -0.26 -12.42 6.54 99.48 0.65 -11.76 15 7 C -0.49 -27.34 7.99 25.60 0.20 -27.13 15 8 H 0.02 1.34 7.98 -2.91 -0.02 1.32 15 9 C 0.21 9.16 1.63 43.42 0.07 9.23 15 10 H 0.08 3.71 4.92 -2.39 -0.01 3.70 15 11 N -0.84 -31.05 6.24 -174.97 -1.09 -32.14 15 12 C 0.00 -0.01 5.01 -19.87 -0.10 -0.11 15 13 C -0.17 -4.77 9.23 22.31 0.21 -4.56 15 14 C 0.16 3.68 7.30 22.38 0.16 3.85 15 15 F -0.12 -2.42 17.27 44.97 0.78 -1.65 15 16 C -0.15 -2.80 10.03 22.31 0.22 -2.58 15 17 C -0.02 -0.47 9.55 22.26 0.21 -0.25 15 18 C -0.08 -2.78 6.84 36.38 0.25 -2.53 15 19 N 0.03 1.34 4.45 -46.46 -0.21 1.13 15 20 O -0.18 -7.26 18.45 18.88 0.35 -6.91 15 21 O -0.18 -8.69 14.32 18.89 0.27 -8.42 15 22 H 0.27 15.86 8.31 -92.71 -0.77 15.09 15 23 H 0.34 9.95 9.06 -89.70 -0.81 9.14 15 24 H 0.34 11.66 7.28 -89.70 -0.65 11.01 15 25 H 0.17 4.06 6.25 -2.91 -0.02 4.04 15 26 H 0.20 1.93 8.06 -2.91 -0.02 1.90 15 27 H 0.18 3.47 7.61 -2.91 -0.02 3.45 15 Total: -1.00 -71.31 243.99 3.60 -67.71 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -0.27 Total: 9.96 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 1.69 Total: -21.46 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -1.00 Total: -90.46 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.62 Total: -15.33 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.78 Total: -1.65 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 1.79 Total: 51.23 kcal Total: -71.31 3.60 -67.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095683230.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.078 kcal (2) G-P(sol) polarization free energy of solvation -71.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds