Wall clock time and date at job start Mon Mar 30 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99945 * 2 1 4 4 H 1.48493 * 109.47165 * 90.00059 * 3 2 1 5 5 H 1.48507 * 109.46769 * 210.00129 * 3 2 1 6 6 H 1.48505 * 109.47001 * 329.99801 * 3 2 1 7 7 C 1.37875 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99757 * 343.85943 * 7 2 1 9 9 C 1.50695 * 120.00217 * 163.86984 * 7 2 1 10 10 H 1.09004 * 109.47439 * 54.49910 * 9 7 2 11 11 N 1.46904 * 109.47065 * 294.50445 * 9 7 2 12 12 C 1.50694 * 109.47395 * 174.50408 * 9 7 2 13 13 C 1.38274 * 119.97749 * 99.99588 * 12 9 7 14 14 C 1.38169 * 120.02628 * 180.02562 * 13 12 9 15 15 C 1.38488 * 119.97791 * 359.97438 * 14 13 12 16 16 F 1.35092 * 120.02501 * 179.97438 * 15 14 13 17 17 C 1.38435 * 119.94578 * 359.97438 * 15 14 13 18 18 C 1.38221 * 119.97353 * 279.72410 * 12 9 7 19 19 N 1.47998 * 119.98835 * 359.97438 * 18 12 9 20 20 O 1.21804 * 120.00493 * 179.97438 * 19 18 12 21 21 O 1.21805 * 120.00008 * 359.97438 * 19 18 12 22 22 H 0.96993 * 119.99862 * 174.92180 * 1 2 3 23 23 H 1.00904 * 110.99471 * 306.09521 * 11 9 7 24 24 H 1.00901 * 110.99943 * 70.04405 * 11 9 7 25 25 H 1.07999 * 119.98317 * 0.02562 * 13 12 9 26 26 H 1.08008 * 120.01255 * 179.97438 * 14 13 12 27 27 H 1.07996 * 120.01318 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5468 1.4401 -0.7001 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4964 -2.1110 0.2591 9 6 3.4670 -1.2196 -0.3631 10 1 4.0108 -0.5190 0.2706 11 7 3.6292 -0.8336 -1.7712 12 6 4.0114 -2.6097 -0.1574 13 6 4.1678 -3.4574 -1.2386 14 6 4.6663 -4.7323 -1.0511 15 6 5.0098 -5.1609 0.2202 16 9 5.4968 -6.4074 0.4047 17 6 4.8538 -4.3110 1.3017 18 6 4.3592 -3.0344 1.1111 19 7 4.1974 -2.1237 2.2664 20 8 4.5033 -2.4978 3.3845 21 8 3.7582 -0.9999 2.0992 22 1 -0.4849 -0.8367 -0.0744 23 1 3.0554 -1.4067 -2.3716 24 1 3.4254 0.1457 -1.9035 25 1 3.9002 -3.1228 -2.2299 26 1 4.7880 -5.3944 -1.8957 27 1 5.1217 -4.6440 2.2935 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095683250.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:41 Heat of formation + Delta-G solvation = -12.925615 kcal Electronic energy + Delta-G solvation = -17235.303521 eV Core-core repulsion = 14104.395272 eV Total energy + Delta-G solvation = -3130.908249 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.070 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.99123 -41.58896 -39.05382 -36.09487 -34.89473 -32.10451 -31.77482 -29.86690 -26.47477 -25.77947 -23.17853 -22.24304 -20.55589 -18.86540 -18.08441 -17.97003 -16.83126 -16.62263 -16.20301 -15.72033 -15.66361 -14.72402 -13.97951 -13.57980 -13.41938 -12.99337 -12.52442 -12.47734 -11.87876 -11.70044 -11.09803 -10.76527 -10.75014 -10.41111 -10.14001 -9.82363 -9.46083 -9.41367 -8.74664 -8.50996 -7.81239 -6.64318 -4.35941 0.27314 1.09332 1.79722 1.99064 3.29232 3.42873 3.46433 3.51884 4.10557 4.34577 4.62056 4.71980 4.80733 5.08650 5.13762 5.40500 5.67687 5.75992 5.95323 6.20392 6.22097 6.58362 6.78333 7.13821 7.49338 7.98974 8.13249 8.27313 8.35499 8.61746 9.32258 10.68872 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.029707 B = 0.009387 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.312766 B = 2982.212241 C = 3486.179603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.047 3.953 3 Si 1.041 2.959 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.286 1.286 7 C -0.609 4.609 8 H 0.053 0.947 9 C 0.194 3.806 10 H 0.088 0.912 11 N -0.858 5.858 12 C 0.034 3.966 13 C -0.085 4.085 14 C -0.107 4.107 15 C 0.072 3.928 16 F -0.135 7.135 17 C -0.097 4.097 18 C -0.025 4.025 19 N 0.030 4.970 20 O -0.217 6.217 21 O -0.098 6.098 22 H 0.271 0.729 23 H 0.326 0.674 24 H 0.337 0.663 25 H 0.157 0.843 26 H 0.146 0.854 27 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.998 -6.668 -3.202 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.867 3.133 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.212 1.212 7 C -0.648 4.648 8 H 0.071 0.929 9 C 0.085 3.915 10 H 0.105 0.895 11 N -0.390 5.390 12 C 0.031 3.969 13 C -0.104 4.104 14 C -0.126 4.126 15 C 0.052 3.948 16 F -0.113 7.113 17 C -0.117 4.117 18 C -0.110 4.110 19 N 0.545 4.455 20 O -0.415 6.415 21 O -0.325 6.325 22 H 0.081 0.919 23 H 0.138 0.862 24 H 0.152 0.848 25 H 0.174 0.826 26 H 0.164 0.836 27 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.711 -5.809 -3.444 11.829 hybrid contribution -0.922 -1.703 0.506 2.002 sum 8.789 -7.512 -2.938 11.929 Atomic orbital electron populations 1.70815 1.07011 1.30740 1.43528 1.25805 0.95925 1.02426 0.91960 0.84059 0.75219 0.75412 0.78562 1.19788 1.19663 1.21234 1.22271 0.91987 0.96717 1.53872 0.92894 1.18927 0.96501 0.87502 0.88565 0.89514 1.59830 1.62241 1.09022 1.07946 1.20383 0.87940 0.99343 0.89186 1.20965 0.98172 0.91268 1.00006 1.21527 0.97884 0.97372 0.95854 1.17116 1.03201 0.80980 0.93518 1.91508 1.85792 1.37975 1.96044 1.20697 0.98913 0.91479 1.00638 1.20559 1.11773 0.91670 0.86985 1.43324 0.98866 1.01686 1.01612 1.94449 1.55925 1.81012 1.10140 1.94592 1.42417 1.04491 1.90962 0.91915 0.86192 0.84829 0.82577 0.83631 0.82693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 13.70 55.43 0.76 -24.90 15 2 C 0.05 1.25 5.44 -17.82 -0.10 1.16 15 3 Si 1.04 23.57 26.56 -169.99 -4.52 19.06 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.27 -5.48 5.45 56.52 0.31 -5.17 15 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 15 7 C -0.61 -15.67 7.67 -34.44 -0.26 -15.93 15 8 H 0.05 1.52 7.99 -52.48 -0.42 1.10 15 9 C 0.19 4.25 1.70 -70.02 -0.12 4.13 15 10 H 0.09 2.03 4.45 -51.93 -0.23 1.79 15 11 N -0.86 -16.51 8.49 -6.65 -0.06 -16.57 15 12 C 0.03 0.66 5.03 -104.62 -0.53 0.13 15 13 C -0.09 -1.34 9.27 -39.59 -0.37 -1.71 15 14 C -0.11 -1.44 10.03 -39.51 -0.40 -1.83 15 15 C 0.07 1.05 7.30 -39.42 -0.29 0.76 15 16 F -0.13 -1.85 17.27 2.25 0.04 -1.81 15 17 C -0.10 -1.60 9.54 -39.51 -0.38 -1.97 15 18 C -0.03 -0.50 6.84 -79.97 -0.55 -1.05 15 19 N 0.03 0.66 4.45 33.95 0.15 0.81 15 20 O -0.22 -4.62 18.45 -29.46 -0.54 -5.17 15 21 O -0.10 -2.32 14.33 -29.46 -0.42 -2.74 15 22 H 0.27 7.83 8.73 -40.82 -0.36 7.47 15 23 H 0.33 5.85 7.59 -39.29 -0.30 5.55 15 24 H 0.34 6.55 5.75 -39.29 -0.23 6.32 15 25 H 0.16 2.18 6.41 -52.49 -0.34 1.85 15 26 H 0.15 1.44 8.06 -52.48 -0.42 1.01 15 27 H 0.16 2.31 7.61 -52.49 -0.40 1.91 15 LS Contribution 242.30 15.07 3.65 3.65 Total: -1.00 -28.54 242.30 -5.50 -34.03 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -1.58 Total: 9.95 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -2.98 Total: -16.31 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.85 Total: -40.65 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.97 Total: -7.91 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -4.52 Total: 19.06 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.54 -5.50 -34.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095683250.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.105 kcal (2) G-P(sol) polarization free energy of solvation -28.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds