Wall clock time and date at job start Mon Mar 30 2020 04:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.67995 * 2 1 4 4 C 1.50753 * 109.68942 * 239.43541 * 2 1 3 5 5 O 1.21229 * 119.35711 * 35.84093 * 4 2 1 6 6 N 1.34073 * 121.28407 * 215.86184 * 4 2 1 7 7 C 1.34071 * 123.28993 * 2.27289 * 6 4 2 8 8 O 1.21221 * 119.35844 * 178.00453 * 7 6 4 9 9 C 1.50757 * 121.28163 * 357.72385 * 7 6 4 10 10 N 1.47218 * 108.37030 * 24.42255 * 9 7 6 11 11 C 1.34782 * 121.34529 * 130.46543 * 10 9 7 12 12 O 1.21683 * 119.99630 * 174.53941 * 11 10 9 13 13 C 1.46368 * 119.99972 * 354.53504 * 11 10 9 14 14 H 1.08006 * 120.00408 * 5.45566 * 13 11 10 15 15 C 1.40052 * 120.00152 * 185.45755 * 13 11 10 16 16 N 1.30668 * 119.99556 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 120.00157 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47085 * 60.00407 * 17 15 13 19 19 H 1.48504 * 109.47079 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47246 * 300.00018 * 17 15 13 21 21 H 1.08992 * 109.47676 * 308.07464 * 1 2 3 22 22 H 1.09006 * 109.46728 * 68.07134 * 1 2 3 23 23 H 1.09006 * 109.46760 * 188.06526 * 1 2 3 24 24 H 1.09003 * 109.47296 * 180.52051 * 3 2 1 25 25 H 1.08999 * 109.47236 * 300.52337 * 3 2 1 26 26 H 1.09002 * 109.47282 * 60.52174 * 3 2 1 27 27 H 0.96993 * 118.35234 * 182.29252 * 6 4 2 28 28 H 1.09007 * 109.68064 * 144.14467 * 9 7 6 29 29 H 1.08999 * 109.68369 * 264.66105 * 9 7 6 30 30 H 0.97008 * 119.99978 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0452 1.4406 0.0000 4 6 2.0379 -0.7218 -1.2222 5 8 1.4317 -0.6204 -2.2671 6 7 3.1468 -1.4740 -1.1759 7 6 3.8521 -1.6767 -0.0539 8 8 4.8243 -2.4001 -0.0857 9 6 3.4634 -1.0176 1.2450 10 7 2.0259 -0.7040 1.1942 11 6 1.1972 -1.0479 2.2000 12 8 0.0343 -0.6903 2.1793 13 6 1.6962 -1.8514 3.3170 14 1 2.7466 -2.0944 3.3807 15 6 0.8115 -2.3053 4.3033 16 7 -0.4594 -2.0117 4.2260 17 14 1.4482 -3.3313 5.7285 18 1 2.4607 -2.5525 6.4857 19 1 0.3202 -3.6826 6.6283 20 1 2.0698 -4.5742 5.2048 21 1 -0.3634 0.6337 0.8089 22 1 -0.3633 0.3838 -0.9534 23 1 -0.3633 -1.0176 0.1442 24 1 3.1352 1.4367 -0.0093 25 1 1.6761 1.9585 -0.8852 26 1 1.6914 1.9531 0.8946 27 1 3.4542 -1.8922 -1.9952 28 1 3.6622 -1.6960 2.0748 29 1 4.0357 -0.0993 1.3764 30 1 -1.0723 -2.3263 4.9090 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097316664.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:58 Heat of formation + Delta-G solvation = -88.139976 kcal Electronic energy + Delta-G solvation = -18034.326940 eV Core-core repulsion = 15023.617457 eV Total energy + Delta-G solvation = -3010.709483 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 6.82 seconds Orbital eigenvalues (eV) -41.30438 -38.74478 -37.97176 -35.06294 -34.17237 -32.73856 -31.95801 -27.40673 -26.81399 -26.07983 -24.27268 -22.20713 -20.43254 -18.28988 -17.74755 -17.21954 -16.33173 -15.81536 -15.64203 -14.92052 -14.60007 -14.25158 -14.20426 -13.54043 -13.03459 -12.77219 -12.27237 -12.06865 -11.76119 -11.52379 -11.41026 -11.22460 -11.03701 -10.92528 -10.54624 -10.41620 -10.31269 -10.04265 -9.86796 -9.02515 -7.76189 -7.52461 -6.37432 -4.88860 1.72698 2.95250 2.98755 3.06830 3.12661 3.13604 3.76468 4.09443 4.16104 4.32174 4.94207 5.22541 5.27928 5.40357 5.72839 5.81301 5.83924 5.90381 6.16105 6.28174 6.37737 6.69740 6.79788 7.09614 7.21056 7.26354 7.54467 7.72440 7.97130 8.08168 8.80569 9.02899 10.28608 10.49764 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.028011 B = 0.009429 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.384644 B = 2968.814456 C = 3609.691834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.159 3.841 3 C -0.149 4.149 4 C 0.526 3.474 5 O -0.505 6.505 6 N -0.674 5.674 7 C 0.519 3.481 8 O -0.512 6.512 9 C 0.101 3.899 10 N -0.637 5.637 11 C 0.561 3.439 12 O -0.553 6.553 13 C -0.543 4.543 14 H 0.074 0.926 15 C 0.090 3.910 16 N -0.761 5.761 17 Si 0.909 3.091 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.266 1.266 21 H 0.096 0.904 22 H 0.042 0.958 23 H 0.068 0.932 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.401 0.599 28 H 0.141 0.859 29 H 0.095 0.905 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.069 3.448 -4.297 8.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.070 3.930 3 C -0.207 4.207 4 C 0.313 3.687 5 O -0.377 6.377 6 N -0.338 5.338 7 C 0.308 3.692 8 O -0.385 6.385 9 C -0.026 4.026 10 N -0.380 5.380 11 C 0.368 3.632 12 O -0.434 6.434 13 C -0.579 4.579 14 H 0.092 0.908 15 C -0.132 4.132 16 N -0.389 5.389 17 Si 0.733 3.267 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.191 1.191 21 H 0.115 0.885 22 H 0.061 0.939 23 H 0.087 0.913 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.240 0.760 28 H 0.159 0.841 29 H 0.113 0.887 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.293 3.396 -4.558 7.767 hybrid contribution 0.707 -0.839 0.187 1.113 sum 6.000 2.557 -4.372 7.852 Atomic orbital electron populations 1.22029 0.88741 1.05151 1.01081 1.20711 0.98310 0.91770 0.82203 1.22121 1.00733 0.94182 1.03706 1.21791 0.78338 0.76959 0.91565 1.90702 1.54915 1.60068 1.31977 1.44988 1.26973 1.48138 1.13694 1.21910 0.81314 0.79796 0.86188 1.90738 1.26524 1.35435 1.85833 1.21916 0.85016 1.01508 0.94140 1.48876 1.06552 1.62664 1.19862 1.18251 0.84460 0.79895 0.80551 1.90640 1.17333 1.57528 1.77884 1.20906 0.95513 1.34406 1.07087 0.90790 1.25695 0.94363 0.94884 0.98224 1.69963 1.02978 1.34681 1.31244 0.86392 0.79128 0.80523 0.80641 1.19016 1.20420 1.19096 0.88512 0.93932 0.91309 0.92728 0.91330 0.90054 0.76029 0.84118 0.88736 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 6.75 37.16 0.25 -2.00 16 2 C 0.16 2.89 1.05 -132.55 -0.14 2.75 16 3 C -0.15 -2.16 8.60 37.16 0.32 -1.84 16 4 C 0.53 9.20 6.80 -11.27 -0.08 9.13 16 5 O -0.50 -9.63 16.88 5.60 0.09 -9.53 16 6 N -0.67 -10.65 5.06 -11.67 -0.06 -10.71 16 7 C 0.52 8.60 7.89 -11.27 -0.09 8.51 16 8 O -0.51 -9.36 17.87 5.61 0.10 -9.26 16 9 C 0.10 1.68 6.10 -4.77 -0.03 1.65 16 10 N -0.64 -12.74 2.72 -161.94 -0.44 -13.18 16 11 C 0.56 14.04 7.40 -12.99 -0.10 13.94 16 12 O -0.55 -15.42 10.92 5.20 0.06 -15.36 16 13 C -0.54 -13.68 8.89 -35.63 -0.32 -14.00 16 14 H 0.07 1.68 5.73 -52.48 -0.30 1.38 16 15 C 0.09 2.28 5.50 -17.37 -0.10 2.19 16 16 N -0.76 -20.86 11.84 55.55 0.66 -20.20 16 17 Si 0.91 18.69 29.56 -169.99 -5.02 13.67 16 18 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 H 0.10 2.07 6.56 -51.93 -0.34 1.73 16 22 H 0.04 0.77 7.58 -51.93 -0.39 0.37 16 23 H 0.07 1.58 7.08 -51.93 -0.37 1.21 16 24 H 0.05 0.69 7.50 -51.93 -0.39 0.30 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.40 5.59 8.76 -40.82 -0.36 5.24 16 28 H 0.14 2.42 5.46 -51.92 -0.28 2.14 16 29 H 0.10 1.27 7.68 -51.93 -0.40 0.87 16 30 H 0.27 6.85 8.29 -40.82 -0.34 6.51 16 LS Contribution 256.11 15.07 3.86 3.86 Total: -1.00 -30.70 256.11 -3.84 -34.54 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -2.81 Total: 5.85 kcal Atomic # 6 Polarization: 20.60 SS G_CDS: -0.27 Total: 20.32 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.16 Total: -44.09 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: 0.25 Total: -34.15 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.70 -3.84 -34.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097316664.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.600 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.83 seconds