Wall clock time and date at job start Mon Mar 30 2020 04:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.67995 * 2 1 4 4 C 1.50753 * 109.68942 * 239.43541 * 2 1 3 5 5 O 1.21229 * 119.35711 * 35.84093 * 4 2 1 6 6 N 1.34073 * 121.28407 * 215.86184 * 4 2 1 7 7 C 1.34071 * 123.28993 * 2.27289 * 6 4 2 8 8 O 1.21221 * 119.35844 * 178.00453 * 7 6 4 9 9 C 1.50757 * 121.28163 * 357.72385 * 7 6 4 10 10 N 1.47218 * 108.37030 * 24.42255 * 9 7 6 11 11 C 1.34782 * 121.34529 * 130.46543 * 10 9 7 12 12 O 1.21683 * 119.99630 * 174.53941 * 11 10 9 13 13 C 1.46368 * 119.99972 * 354.53504 * 11 10 9 14 14 H 1.08006 * 120.00408 * 5.45566 * 13 11 10 15 15 C 1.40052 * 120.00152 * 185.45755 * 13 11 10 16 16 N 1.30668 * 119.99556 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 120.00157 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47085 * 60.00407 * 17 15 13 19 19 H 1.48504 * 109.47079 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47246 * 300.00018 * 17 15 13 21 21 H 1.08992 * 109.47676 * 308.07464 * 1 2 3 22 22 H 1.09006 * 109.46728 * 68.07134 * 1 2 3 23 23 H 1.09006 * 109.46760 * 188.06526 * 1 2 3 24 24 H 1.09003 * 109.47296 * 180.52051 * 3 2 1 25 25 H 1.08999 * 109.47236 * 300.52337 * 3 2 1 26 26 H 1.09002 * 109.47282 * 60.52174 * 3 2 1 27 27 H 0.96993 * 118.35234 * 182.29252 * 6 4 2 28 28 H 1.09007 * 109.68064 * 144.14467 * 9 7 6 29 29 H 1.08999 * 109.68369 * 264.66105 * 9 7 6 30 30 H 0.97008 * 119.99978 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0452 1.4406 0.0000 4 6 2.0379 -0.7218 -1.2222 5 8 1.4317 -0.6204 -2.2671 6 7 3.1468 -1.4740 -1.1759 7 6 3.8521 -1.6767 -0.0539 8 8 4.8243 -2.4001 -0.0857 9 6 3.4634 -1.0176 1.2450 10 7 2.0259 -0.7040 1.1942 11 6 1.1972 -1.0479 2.2000 12 8 0.0343 -0.6903 2.1793 13 6 1.6962 -1.8514 3.3170 14 1 2.7466 -2.0944 3.3807 15 6 0.8115 -2.3053 4.3033 16 7 -0.4594 -2.0117 4.2260 17 14 1.4482 -3.3313 5.7285 18 1 2.4607 -2.5525 6.4857 19 1 0.3202 -3.6826 6.6283 20 1 2.0698 -4.5742 5.2048 21 1 -0.3634 0.6337 0.8089 22 1 -0.3633 0.3838 -0.9534 23 1 -0.3633 -1.0176 0.1442 24 1 3.1352 1.4367 -0.0093 25 1 1.6761 1.9585 -0.8852 26 1 1.6914 1.9531 0.8946 27 1 3.4542 -1.8922 -1.9952 28 1 3.6622 -1.6960 2.0748 29 1 4.0357 -0.0993 1.3764 30 1 -1.0723 -2.3263 4.9090 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097316664.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:54 Heat of formation + Delta-G solvation = -111.803493 kcal Electronic energy + Delta-G solvation = -18035.353067 eV Core-core repulsion = 15023.617457 eV Total energy + Delta-G solvation = -3011.735610 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.74058 -40.18491 -39.66727 -36.70682 -35.64385 -34.62961 -33.50174 -28.91842 -28.43050 -27.75596 -25.71666 -23.65361 -22.16191 -19.76983 -19.21228 -18.75103 -18.00936 -17.38627 -17.25851 -16.37459 -16.10202 -15.90126 -15.62563 -15.03717 -14.71409 -14.38452 -13.67761 -13.44171 -13.30213 -13.20725 -13.04253 -12.82035 -12.66809 -12.46162 -12.16249 -12.01854 -11.95027 -11.43220 -11.30614 -10.89592 -9.47806 -9.36674 -8.26324 -6.85345 0.32950 1.44439 1.44938 1.54758 1.58129 1.64367 2.18102 2.44693 2.46025 2.75659 3.46936 3.64415 3.86942 3.91848 4.29223 4.50930 4.66419 4.69084 4.79309 4.88825 4.96435 5.18685 5.28231 5.36892 5.50623 5.69146 5.97575 6.14323 6.18696 6.68592 6.88648 7.22774 8.40657 8.63563 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.028011 B = 0.009429 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.384644 B = 2968.814456 C = 3609.691834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.153 3.847 3 C -0.141 4.141 4 C 0.534 3.466 5 O -0.519 6.519 6 N -0.664 5.664 7 C 0.529 3.471 8 O -0.525 6.525 9 C 0.099 3.901 10 N -0.638 5.638 11 C 0.550 3.450 12 O -0.593 6.593 13 C -0.566 4.566 14 H 0.096 0.904 15 C 0.038 3.962 16 N -0.813 5.813 17 Si 0.986 3.014 18 H -0.251 1.251 19 H -0.279 1.279 20 H -0.259 1.259 21 H 0.077 0.923 22 H 0.060 0.940 23 H 0.028 0.972 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.413 0.587 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.241 3.571 -4.319 9.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.064 3.936 3 C -0.200 4.200 4 C 0.322 3.678 5 O -0.392 6.392 6 N -0.329 5.329 7 C 0.318 3.682 8 O -0.399 6.399 9 C -0.026 4.026 10 N -0.379 5.379 11 C 0.357 3.643 12 O -0.477 6.477 13 C -0.602 4.602 14 H 0.114 0.886 15 C -0.179 4.179 16 N -0.442 5.442 17 Si 0.806 3.194 18 H -0.175 1.175 19 H -0.204 1.204 20 H -0.184 1.184 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.048 0.952 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.253 0.747 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.522 3.525 -4.620 9.505 hybrid contribution 0.038 -0.857 0.103 0.864 sum 7.560 2.668 -4.517 9.202 Atomic orbital electron populations 1.21770 0.90657 1.02223 1.01121 1.20859 0.97026 0.94025 0.81708 1.22083 1.02352 0.91224 1.04317 1.21540 0.78504 0.76825 0.90944 1.90707 1.55449 1.60681 1.32406 1.44797 1.26290 1.47598 1.14175 1.21775 0.80953 0.79283 0.86170 1.90751 1.27212 1.35945 1.85971 1.22132 0.83168 1.03342 0.94006 1.48540 1.07679 1.62317 1.19365 1.18473 0.84412 0.79744 0.81641 1.90624 1.19162 1.58765 1.79149 1.21450 0.96798 1.34459 1.07523 0.88581 1.26786 0.94310 0.95747 1.01051 1.70122 1.04708 1.36706 1.32690 0.85223 0.78584 0.78752 0.76833 1.17483 1.20406 1.18368 0.90456 0.92134 0.95242 0.90080 0.89577 0.90625 0.74693 0.84579 0.84666 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.08 6.75 71.98 0.49 -3.59 16 2 C 0.15 5.34 1.05 2.73 0.00 5.35 16 3 C -0.14 -3.74 8.60 71.98 0.62 -3.12 16 4 C 0.53 17.70 6.80 87.78 0.60 18.29 16 5 O -0.52 -18.93 16.88 -2.87 -0.05 -18.98 16 6 N -0.66 -19.40 5.06 -428.46 -2.17 -21.57 16 7 C 0.53 16.12 7.89 87.79 0.69 16.82 16 8 O -0.52 -17.78 17.87 -2.85 -0.05 -17.83 16 9 C 0.10 3.03 6.10 85.51 0.52 3.55 16 10 N -0.64 -24.88 2.72 -784.47 -2.13 -27.01 16 11 C 0.55 27.85 7.40 86.36 0.64 28.49 16 12 O -0.59 -34.29 10.92 -4.30 -0.05 -34.33 16 13 C -0.57 -28.41 8.89 24.83 0.22 -28.19 16 14 H 0.10 4.22 5.73 -2.91 -0.02 4.20 16 15 C 0.04 1.92 5.50 85.31 0.47 2.39 16 16 N -0.81 -45.82 11.84 21.84 0.26 -45.56 16 17 Si 0.99 37.95 29.56 68.60 2.03 39.98 16 18 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 19 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 20 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 21 H 0.08 3.43 6.56 -2.39 -0.02 3.42 16 22 H 0.06 2.18 7.58 -2.38 -0.02 2.17 16 23 H 0.03 1.39 7.08 -2.38 -0.02 1.37 16 24 H 0.08 1.72 7.50 -2.39 -0.02 1.70 16 25 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.41 10.49 8.76 -92.71 -0.81 9.68 16 28 H 0.14 4.36 5.46 -2.38 -0.01 4.35 16 29 H 0.14 3.08 7.68 -2.39 -0.02 3.07 16 30 H 0.27 14.24 8.29 -92.70 -0.77 13.47 16 Total: -1.00 -67.39 256.11 2.47 -64.93 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.38 Total: 20.40 kcal Atomic # 6 Polarization: 35.73 SS G_CDS: 4.25 Total: 39.98 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -4.05 Total: -94.14 kcal Atomic # 8 Polarization: -71.00 SS G_CDS: -0.15 Total: -71.14 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -67.39 2.47 -64.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097316664.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.878 kcal (2) G-P(sol) polarization free energy of solvation -67.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds