Wall clock time and date at job start Mon Mar 30 2020 04:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47165 * 2 1 4 4 H 1.08997 * 109.68066 * 305.52765 * 3 2 1 5 5 C 1.50751 * 109.68708 * 184.99959 * 3 2 1 6 6 O 1.21227 * 119.35603 * 84.71893 * 5 3 2 7 7 N 1.34061 * 121.28430 * 264.69916 * 5 3 2 8 8 C 1.34070 * 123.29450 * 357.70801 * 7 5 3 9 9 O 1.21225 * 119.36088 * 182.29412 * 8 7 5 10 10 C 1.50755 * 121.28102 * 2.31437 * 8 7 5 11 11 N 1.47227 * 108.36050 * 335.54258 * 10 8 7 12 12 C 1.34776 * 121.35046 * 229.51074 * 11 10 8 13 13 O 1.21684 * 120.00352 * 174.80372 * 12 11 10 14 14 C 1.46375 * 119.99593 * 354.79917 * 12 11 10 15 15 H 1.07999 * 120.00277 * 5.01219 * 14 12 11 16 16 C 1.40051 * 119.99738 * 185.00202 * 14 12 11 17 17 N 1.30675 * 120.00394 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99923 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47158 * 90.00140 * 18 16 14 20 20 H 1.48503 * 109.47025 * 210.00405 * 18 16 14 21 21 H 1.48503 * 109.47039 * 330.00365 * 18 16 14 22 22 H 1.09001 * 109.47446 * 299.99489 * 1 2 3 23 23 H 1.08997 * 109.47511 * 60.00377 * 1 2 3 24 24 H 1.09004 * 109.47585 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46987 * 240.00238 * 2 1 3 26 26 H 1.08997 * 109.47054 * 119.99899 * 2 1 3 27 27 H 0.97006 * 118.35708 * 177.73096 * 7 5 3 28 28 H 1.08994 * 109.68646 * 95.27793 * 10 8 7 29 29 H 1.09004 * 109.68332 * 215.84374 * 10 8 7 30 30 H 0.96995 * 119.99905 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6001 1.9874 -0.8352 5 6 3.5424 1.4500 -0.1237 6 8 4.0485 1.3863 -1.2234 7 7 4.3296 1.5261 0.9587 8 6 3.8551 1.6447 2.2070 9 8 4.6328 1.7498 3.1310 10 6 2.3732 1.6496 2.4840 11 7 1.6755 2.0974 1.2673 12 6 0.7407 3.0672 1.3118 13 8 0.2474 3.4846 0.2807 14 6 0.3189 3.6184 2.6005 15 1 0.8130 3.3069 3.5089 16 6 -0.7254 4.5500 2.6555 17 7 -1.3236 4.9268 1.5565 18 14 -1.2633 5.2540 4.3001 19 1 -0.4831 6.4836 4.5912 20 1 -2.7097 5.5865 4.2470 21 1 -1.0247 4.2517 5.3695 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.2909 1.4941 0.8325 28 1 2.0455 0.6438 2.7464 29 1 2.1553 2.3332 3.3046 30 1 -2.0470 5.5717 1.5947 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097320947.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:33 Heat of formation + Delta-G solvation = -129.535036 kcal Electronic energy + Delta-G solvation = -17799.249493 eV Core-core repulsion = 14786.744985 eV Total energy + Delta-G solvation = -3012.504508 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.62900 -40.06975 -39.55149 -36.85435 -35.61257 -34.62636 -33.80251 -29.65598 -28.84681 -27.41080 -24.50447 -23.20681 -22.12745 -20.07203 -19.40175 -18.75098 -17.92636 -17.74556 -17.29138 -16.33396 -16.15781 -15.88680 -15.67943 -15.25605 -14.81567 -14.47055 -14.12697 -13.42021 -13.35479 -13.18951 -13.07240 -12.76895 -12.33896 -12.26818 -12.05719 -11.97298 -11.84336 -11.44084 -11.34639 -10.92641 -9.88587 -9.44577 -8.31443 -6.87282 0.31837 1.43349 1.45147 1.55783 1.60187 1.64955 2.18193 2.44101 2.45952 2.76767 3.46227 3.62244 3.93865 4.00049 4.30035 4.39824 4.50443 4.55137 4.83803 4.92182 5.01102 5.13087 5.31154 5.37516 5.47663 5.68328 5.91924 6.13572 6.17323 6.68119 6.86925 7.20360 8.36867 8.62617 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.025883 B = 0.009006 C = 0.007663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.543100 B = 3108.342099 C = 3653.060562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C 0.126 3.874 4 H 0.104 0.896 5 C 0.536 3.464 6 O -0.527 6.527 7 N -0.663 5.663 8 C 0.530 3.470 9 O -0.524 6.524 10 C 0.101 3.899 11 N -0.636 5.636 12 C 0.553 3.447 13 O -0.612 6.612 14 C -0.562 4.562 15 H 0.101 0.899 16 C 0.035 3.965 17 N -0.815 5.815 18 Si 0.988 3.012 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.242 1.242 22 H 0.039 0.961 23 H 0.037 0.963 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.414 0.586 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.570 -9.315 3.741 11.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C 0.018 3.982 4 H 0.122 0.878 5 C 0.325 3.675 6 O -0.401 6.401 7 N -0.327 5.327 8 C 0.319 3.681 9 O -0.398 6.398 10 C -0.024 4.024 11 N -0.377 5.377 12 C 0.361 3.639 13 O -0.498 6.498 14 C -0.598 4.598 15 H 0.118 0.882 16 C -0.181 4.181 17 N -0.444 5.444 18 Si 0.808 3.192 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.165 1.165 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.102 0.898 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.254 0.746 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.597 -8.936 3.024 10.495 hybrid contribution 0.200 0.705 0.142 0.746 sum 4.797 -8.232 3.166 10.040 Atomic orbital electron populations 1.21567 0.94409 1.02158 1.01250 1.21758 0.97363 0.91595 1.04399 1.21384 0.87504 0.97987 0.91308 0.87840 1.21474 0.90851 0.71975 0.83198 1.90733 1.76337 1.46642 1.26371 1.44770 1.13041 1.67078 1.07829 1.21754 0.93162 0.72020 0.81155 1.90757 1.59489 1.46341 1.43198 1.22098 0.83932 1.05784 0.90625 1.48404 1.43337 1.40655 1.05268 1.18543 0.77275 0.77379 0.90682 1.90605 1.58779 1.62908 1.37459 1.21465 1.19345 1.26280 0.92732 0.88162 1.26860 0.94854 0.94929 1.01472 1.70148 1.18276 1.25029 1.30944 0.85135 0.77543 0.79210 0.77283 1.19339 1.20172 1.16504 0.94223 0.94401 0.89791 0.88965 0.89106 0.74624 0.84652 0.84633 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.81 71.98 0.71 -3.31 16 2 C -0.11 -2.98 5.46 30.59 0.17 -2.81 16 3 C 0.13 4.40 2.55 44.12 0.11 4.51 16 4 H 0.10 4.38 7.11 -2.39 -0.02 4.36 16 5 C 0.54 17.49 7.16 87.78 0.63 18.12 16 6 O -0.53 -19.32 17.87 -2.87 -0.05 -19.37 16 7 N -0.66 -18.81 5.06 -428.48 -2.17 -20.97 16 8 C 0.53 15.71 7.89 87.78 0.69 16.40 16 9 O -0.52 -17.36 17.87 -2.86 -0.05 -17.41 16 10 C 0.10 3.03 6.03 85.51 0.52 3.55 16 11 N -0.64 -24.62 2.27 -807.57 -1.83 -26.45 16 12 C 0.55 28.31 7.31 86.36 0.63 28.94 16 13 O -0.61 -37.16 14.55 -4.30 -0.06 -37.23 16 14 C -0.56 -28.12 8.86 24.83 0.22 -27.90 16 15 H 0.10 4.34 5.80 -2.91 -0.02 4.32 16 16 C 0.04 1.80 5.50 85.30 0.47 2.27 16 17 N -0.81 -46.32 11.84 21.84 0.26 -46.07 16 18 Si 0.99 37.67 29.56 68.60 2.03 39.70 16 19 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 20 H -0.28 -10.38 7.11 99.48 0.71 -9.67 16 21 H -0.24 -8.37 7.11 99.48 0.71 -7.66 16 22 H 0.04 1.39 7.48 -2.39 -0.02 1.37 16 23 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 25 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.09 1.93 7.25 -2.39 -0.02 1.91 16 27 H 0.41 10.20 8.76 -92.70 -0.81 9.39 16 28 H 0.14 3.03 7.52 -2.39 -0.02 3.02 16 29 H 0.14 4.26 5.58 -2.38 -0.01 4.24 16 30 H 0.28 14.30 8.29 -92.71 -0.77 13.54 16 Total: -1.00 -70.00 263.13 2.64 -67.35 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.38 Total: 20.69 kcal Atomic # 6 Polarization: 35.62 SS G_CDS: 4.14 Total: 39.76 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -3.74 Total: -93.49 kcal Atomic # 8 Polarization: -73.85 SS G_CDS: -0.16 Total: -74.01 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Total: -70.00 2.64 -67.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097320947.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.183 kcal (2) G-P(sol) polarization free energy of solvation -69.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds