Wall clock time and date at job start Mon Mar 30 2020 04:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47457 * 2 1 4 4 H 1.08997 * 109.67951 * 54.99841 * 3 2 1 5 5 C 1.50752 * 109.68574 * 175.52453 * 3 2 1 6 6 O 1.21226 * 119.35756 * 275.27560 * 5 3 2 7 7 N 1.34074 * 121.28219 * 95.30276 * 5 3 2 8 8 C 1.34064 * 123.29232 * 2.24252 * 7 5 3 9 9 O 1.21229 * 119.35703 * 177.75449 * 8 7 5 10 10 C 1.50755 * 121.28421 * 357.73161 * 8 7 5 11 11 N 1.47228 * 109.67822 * 294.47473 * 3 2 1 12 12 C 1.34776 * 121.34632 * 109.78465 * 11 3 2 13 13 O 1.21694 * 119.99816 * 355.38067 * 12 11 3 14 14 C 1.46370 * 120.00294 * 175.37859 * 12 11 3 15 15 H 1.08008 * 119.99976 * 6.22194 * 14 12 11 16 16 C 1.40048 * 120.00355 * 186.21106 * 14 12 11 17 17 N 1.30673 * 119.99729 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00130 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47399 * 90.00252 * 18 16 14 20 20 H 1.48497 * 109.47351 * 210.00259 * 18 16 14 21 21 H 1.48503 * 109.47177 * 330.00526 * 18 16 14 22 22 H 1.09004 * 109.47140 * 300.00466 * 1 2 3 23 23 H 1.09004 * 109.47228 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46601 * 60.00207 * 1 2 3 25 25 H 1.09002 * 109.47498 * 119.99960 * 2 1 3 26 26 H 1.09004 * 109.47140 * 239.99534 * 2 1 3 27 27 H 0.97000 * 118.34890 * 182.26633 * 7 5 3 28 28 H 1.09005 * 109.68239 * 144.15711 * 10 8 7 29 29 H 1.08994 * 109.68954 * 264.68032 * 10 8 7 30 30 H 0.96996 * 119.99614 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6075 1.9848 0.8407 5 6 3.5435 1.4495 0.1108 6 8 4.0591 1.3825 1.2059 7 7 4.3215 1.5289 -0.9783 8 6 3.8361 1.6505 -2.2221 9 8 4.6058 1.7575 -3.1526 10 6 2.3519 1.6561 -2.4862 11 7 1.6639 2.1014 -1.2617 12 6 0.7289 3.0716 -1.2945 13 8 0.1170 3.3612 -0.2832 14 6 0.4495 3.7768 -2.5462 15 1 0.9181 3.4540 -3.4642 16 6 -0.4256 4.8702 -2.5537 17 7 -0.9923 5.2611 -1.4430 18 14 -0.7827 5.7698 -4.1514 19 1 -1.9527 5.1459 -4.8200 20 1 -1.0806 7.1953 -3.8609 21 1 0.4014 5.6834 -5.0435 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 5.2837 1.4964 -0.8604 28 1 2.1270 2.3416 -3.3033 29 1 2.0218 0.6511 -2.7488 30 1 -1.5981 6.0185 -1.4482 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097320948.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:40 Heat of formation + Delta-G solvation = -105.078894 kcal Electronic energy + Delta-G solvation = -17803.501474 eV Core-core repulsion = 14792.057464 eV Total energy + Delta-G solvation = -3011.444010 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.21244 -38.65156 -37.82919 -35.18805 -34.21815 -32.68308 -32.36739 -28.21989 -27.14096 -25.75231 -23.13450 -21.89828 -20.40242 -18.70188 -17.81713 -17.24456 -16.31987 -16.20480 -15.64692 -14.87481 -14.65078 -14.43982 -14.20296 -13.82852 -13.24628 -12.88454 -12.38221 -11.98967 -11.87371 -11.81201 -11.40053 -11.17434 -10.95584 -10.65052 -10.54014 -10.44560 -10.35722 -10.06322 -9.93205 -9.04096 -7.90776 -7.80070 -6.41958 -4.89714 1.70234 2.93551 2.97925 3.04903 3.12650 3.15286 3.76688 4.09574 4.15653 4.31586 4.92130 5.13420 5.27928 5.40892 5.62696 5.71193 5.79416 5.92970 6.01457 6.16883 6.18122 6.39145 6.71209 6.83537 7.11924 7.24764 7.51324 7.68916 7.95829 8.06309 8.79635 9.00906 10.26482 10.49058 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.025196 B = 0.009144 C = 0.007719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.011793 B = 3061.226230 C = 3626.613148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.129 3.871 4 H 0.136 0.864 5 C 0.526 3.474 6 O -0.510 6.510 7 N -0.673 5.673 8 C 0.520 3.480 9 O -0.512 6.512 10 C 0.101 3.899 11 N -0.637 5.637 12 C 0.562 3.438 13 O -0.559 6.559 14 C -0.542 4.542 15 H 0.076 0.924 16 C 0.089 3.911 17 N -0.761 5.761 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.262 1.262 22 H 0.060 0.940 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.402 0.598 28 H 0.141 0.859 29 H 0.095 0.905 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.812 -7.870 -1.890 8.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.021 3.979 4 H 0.154 0.846 5 C 0.314 3.686 6 O -0.382 6.382 7 N -0.337 5.337 8 C 0.308 3.692 9 O -0.385 6.385 10 C -0.026 4.026 11 N -0.379 5.379 12 C 0.369 3.631 13 O -0.440 6.440 14 C -0.578 4.578 15 H 0.094 0.906 16 C -0.132 4.132 17 N -0.389 5.389 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.186 1.186 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.240 0.760 28 H 0.159 0.841 29 H 0.113 0.887 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.737 -7.493 -1.159 8.453 hybrid contribution 0.480 0.421 -0.761 0.993 sum 4.217 -7.073 -1.920 8.455 Atomic orbital electron populations 1.21616 0.93617 1.00743 1.03799 1.21758 0.98265 0.93965 1.02065 1.21311 0.86843 0.96321 0.93467 0.84600 1.21746 0.91320 0.72398 0.83116 1.90729 1.75729 1.45622 1.26114 1.44969 1.12502 1.67744 1.08531 1.21901 0.93414 0.72519 0.81325 1.90744 1.59885 1.45593 1.42248 1.21920 0.84451 1.03710 0.92469 1.48838 1.44308 1.41491 1.03310 1.18321 0.77299 0.76875 0.90569 1.90645 1.50734 1.66009 1.36627 1.20907 1.28782 1.14838 0.93309 0.90639 1.25712 0.93961 0.96353 0.97217 1.69978 1.20806 1.21161 1.26938 0.86325 0.79591 0.78772 0.81970 1.19491 1.20325 1.18642 0.92110 0.93170 0.91482 0.90973 0.91950 0.75978 0.84134 0.88714 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.81 37.16 0.36 -1.76 16 2 C -0.12 -1.74 5.46 -26.73 -0.15 -1.88 16 3 C 0.13 2.28 2.52 -68.66 -0.17 2.10 16 4 H 0.14 2.76 7.16 -51.93 -0.37 2.38 16 5 C 0.53 8.94 7.16 -11.27 -0.08 8.86 16 6 O -0.51 -9.62 17.87 5.60 0.10 -9.52 16 7 N -0.67 -10.33 5.06 -11.68 -0.06 -10.39 16 8 C 0.52 8.41 7.89 -11.28 -0.09 8.33 16 9 O -0.51 -9.22 17.87 5.60 0.10 -9.12 16 10 C 0.10 1.65 6.09 -4.71 -0.03 1.62 16 11 N -0.64 -12.51 2.25 -169.15 -0.38 -12.89 16 12 C 0.56 14.09 7.30 -12.99 -0.09 14.00 16 13 O -0.56 -16.12 14.58 5.19 0.08 -16.04 16 14 C -0.54 -13.65 8.88 -35.63 -0.32 -13.97 16 15 H 0.08 1.70 5.76 -52.48 -0.30 1.40 16 16 C 0.09 2.27 5.50 -17.37 -0.10 2.17 16 17 N -0.76 -21.07 11.85 55.55 0.66 -20.41 16 18 Si 0.91 18.70 29.56 -169.99 -5.02 13.68 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 1.18 7.46 -51.93 -0.39 0.79 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.79 7.26 -51.93 -0.38 0.41 16 27 H 0.40 5.45 8.76 -40.82 -0.36 5.09 16 28 H 0.14 2.39 5.48 -51.93 -0.28 2.10 16 29 H 0.10 1.25 7.53 -51.93 -0.39 0.86 16 30 H 0.27 6.88 8.29 -40.82 -0.34 6.54 16 LS Contribution 263.10 15.07 3.96 3.96 Total: -1.00 -31.46 263.10 -4.10 -35.56 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -2.87 Total: 5.71 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: -0.66 Total: 19.47 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.22 Total: -43.69 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: 0.28 Total: -34.69 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.68 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.46 -4.10 -35.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097320948.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.521 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds