Wall clock time and date at job start Mon Mar 30 2020 04:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47457 * 2 1 4 4 H 1.08997 * 109.67951 * 54.99841 * 3 2 1 5 5 C 1.50752 * 109.68574 * 175.52453 * 3 2 1 6 6 O 1.21226 * 119.35756 * 275.27560 * 5 3 2 7 7 N 1.34074 * 121.28219 * 95.30276 * 5 3 2 8 8 C 1.34064 * 123.29232 * 2.24252 * 7 5 3 9 9 O 1.21229 * 119.35703 * 177.75449 * 8 7 5 10 10 C 1.50755 * 121.28421 * 357.73161 * 8 7 5 11 11 N 1.47228 * 109.67822 * 294.47473 * 3 2 1 12 12 C 1.34776 * 121.34632 * 109.78465 * 11 3 2 13 13 O 1.21694 * 119.99816 * 355.38067 * 12 11 3 14 14 C 1.46370 * 120.00294 * 175.37859 * 12 11 3 15 15 H 1.08008 * 119.99976 * 6.22194 * 14 12 11 16 16 C 1.40048 * 120.00355 * 186.21106 * 14 12 11 17 17 N 1.30673 * 119.99729 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00130 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47399 * 90.00252 * 18 16 14 20 20 H 1.48497 * 109.47351 * 210.00259 * 18 16 14 21 21 H 1.48503 * 109.47177 * 330.00526 * 18 16 14 22 22 H 1.09004 * 109.47140 * 300.00466 * 1 2 3 23 23 H 1.09004 * 109.47228 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46601 * 60.00207 * 1 2 3 25 25 H 1.09002 * 109.47498 * 119.99960 * 2 1 3 26 26 H 1.09004 * 109.47140 * 239.99534 * 2 1 3 27 27 H 0.97000 * 118.34890 * 182.26633 * 7 5 3 28 28 H 1.09005 * 109.68239 * 144.15711 * 10 8 7 29 29 H 1.08994 * 109.68954 * 264.68032 * 10 8 7 30 30 H 0.96996 * 119.99614 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6075 1.9848 0.8407 5 6 3.5435 1.4495 0.1108 6 8 4.0591 1.3825 1.2059 7 7 4.3215 1.5289 -0.9783 8 6 3.8361 1.6505 -2.2221 9 8 4.6058 1.7575 -3.1526 10 6 2.3519 1.6561 -2.4862 11 7 1.6639 2.1014 -1.2617 12 6 0.7289 3.0716 -1.2945 13 8 0.1170 3.3612 -0.2832 14 6 0.4495 3.7768 -2.5462 15 1 0.9181 3.4540 -3.4642 16 6 -0.4256 4.8702 -2.5537 17 7 -0.9923 5.2611 -1.4430 18 14 -0.7827 5.7698 -4.1514 19 1 -1.9527 5.1459 -4.8200 20 1 -1.0806 7.1953 -3.8609 21 1 0.4014 5.6834 -5.0435 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 5.2837 1.4964 -0.8604 28 1 2.1270 2.3416 -3.3033 29 1 2.0218 0.6511 -2.7488 30 1 -1.5981 6.0185 -1.4482 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097320948.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:38 Heat of formation + Delta-G solvation = -129.172260 kcal Electronic energy + Delta-G solvation = -17804.546241 eV Core-core repulsion = 14792.057464 eV Total energy + Delta-G solvation = -3012.488777 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.62317 -40.06511 -39.54872 -36.84197 -35.60625 -34.62628 -33.79988 -29.64871 -28.83639 -27.42591 -24.50172 -23.20327 -22.13622 -20.06659 -19.39542 -18.73796 -17.94346 -17.73059 -17.29943 -16.34343 -16.11702 -15.92419 -15.67167 -15.26078 -14.79663 -14.53079 -14.01626 -13.42266 -13.42008 -13.19146 -13.06581 -12.77052 -12.32266 -12.25600 -12.06895 -11.97705 -11.83811 -11.43622 -11.34329 -10.92840 -9.87624 -9.44405 -8.32176 -6.87551 0.32214 1.42961 1.44374 1.55126 1.60007 1.65271 2.17815 2.44264 2.45217 2.77207 3.46434 3.63079 3.91355 3.99976 4.31793 4.40060 4.50138 4.54483 4.83597 4.92429 5.01355 5.13412 5.30815 5.37521 5.48257 5.68645 5.91826 6.13246 6.17569 6.68534 6.86629 7.20146 8.36834 8.62073 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.025196 B = 0.009144 C = 0.007719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.011793 B = 3061.226230 C = 3626.613148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 C 0.126 3.874 4 H 0.103 0.897 5 C 0.537 3.463 6 O -0.527 6.527 7 N -0.663 5.663 8 C 0.530 3.470 9 O -0.524 6.524 10 C 0.100 3.900 11 N -0.636 5.636 12 C 0.554 3.446 13 O -0.609 6.609 14 C -0.564 4.564 15 H 0.100 0.900 16 C 0.035 3.965 17 N -0.816 5.816 18 Si 0.988 3.012 19 H -0.260 1.260 20 H -0.279 1.279 21 H -0.248 1.248 22 H 0.037 0.963 23 H 0.082 0.918 24 H 0.038 0.962 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.414 0.586 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.692 -9.122 -3.729 10.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.151 4.151 3 C 0.019 3.981 4 H 0.121 0.879 5 C 0.325 3.675 6 O -0.401 6.401 7 N -0.327 5.327 8 C 0.320 3.680 9 O -0.398 6.398 10 C -0.026 4.026 11 N -0.376 5.376 12 C 0.361 3.639 13 O -0.494 6.494 14 C -0.600 4.600 15 H 0.118 0.882 16 C -0.181 4.181 17 N -0.445 5.445 18 Si 0.808 3.192 19 H -0.185 1.185 20 H -0.204 1.204 21 H -0.171 1.171 22 H 0.056 0.944 23 H 0.101 0.899 24 H 0.057 0.943 25 H 0.110 0.890 26 H 0.108 0.892 27 H 0.254 0.746 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.673 -8.792 -3.020 10.405 hybrid contribution 0.260 0.750 -0.147 0.807 sum 4.933 -8.043 -3.167 9.952 Atomic orbital electron populations 1.21552 0.94367 1.02016 1.01272 1.21761 0.97393 0.91626 1.04361 1.21373 0.87370 0.97984 0.91400 0.87893 1.21463 0.90895 0.71987 0.83126 1.90734 1.75851 1.46651 1.26832 1.44767 1.13062 1.67044 1.07834 1.21738 0.93122 0.71999 0.81177 1.90758 1.60117 1.46335 1.42604 1.22135 0.84144 1.05698 0.90581 1.48440 1.43369 1.40604 1.05219 1.18519 0.77727 0.77530 0.90085 1.90608 1.52850 1.67811 1.38090 1.21460 1.29088 1.15081 0.94362 0.88244 1.26849 0.93290 0.97110 1.00850 1.70143 1.22197 1.22238 1.29909 0.85136 0.79966 0.76956 0.77127 1.18485 1.20433 1.17133 0.94374 0.89881 0.94299 0.89009 0.89156 0.74622 0.84586 0.84659 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 9.81 71.98 0.71 -3.25 16 2 C -0.11 -2.98 5.46 30.60 0.17 -2.82 16 3 C 0.13 4.41 2.52 44.12 0.11 4.52 16 4 H 0.10 4.34 7.16 -2.39 -0.02 4.33 16 5 C 0.54 17.49 7.16 87.78 0.63 18.11 16 6 O -0.53 -19.29 17.87 -2.86 -0.05 -19.34 16 7 N -0.66 -18.84 5.06 -428.47 -2.17 -21.01 16 8 C 0.53 15.78 7.89 87.79 0.69 16.48 16 9 O -0.52 -17.46 17.87 -2.87 -0.05 -17.51 16 10 C 0.10 3.00 6.09 85.49 0.52 3.52 16 11 N -0.64 -24.57 2.25 -807.28 -1.82 -26.39 16 12 C 0.55 28.28 7.30 86.36 0.63 28.91 16 13 O -0.61 -36.62 14.58 -4.33 -0.06 -36.69 16 14 C -0.56 -28.33 8.88 24.83 0.22 -28.11 16 15 H 0.10 4.34 5.76 -2.91 -0.02 4.32 16 16 C 0.04 1.81 5.50 85.30 0.47 2.28 16 17 N -0.82 -46.52 11.85 21.84 0.26 -46.26 16 18 Si 0.99 37.97 29.56 68.60 2.03 40.00 16 19 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 20 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 21 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 22 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 24 H 0.04 1.35 7.46 -2.39 -0.02 1.33 16 25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.09 1.92 7.26 -2.39 -0.02 1.90 16 27 H 0.41 10.22 8.76 -92.71 -0.81 9.41 16 28 H 0.14 4.29 5.48 -2.38 -0.01 4.28 16 29 H 0.14 3.02 7.53 -2.39 -0.02 3.00 16 30 H 0.28 14.36 8.29 -92.71 -0.77 13.59 16 Total: -1.00 -69.80 263.10 2.66 -67.14 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.38 Total: 20.43 kcal Atomic # 6 Polarization: 35.49 SS G_CDS: 4.15 Total: 39.64 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -3.73 Total: -93.66 kcal Atomic # 8 Polarization: -73.37 SS G_CDS: -0.17 Total: -73.54 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Total: -69.80 2.66 -67.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097320948.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.034 kcal (2) G-P(sol) polarization free energy of solvation -69.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds