Wall clock time and date at job start Mon Mar 30 2020 03:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30002 * 126.21299 * 2 1 4 4 O 1.21283 * 110.46396 * 179.97438 * 3 2 1 5 5 C 1.34022 * 109.74556 * 0.02562 * 4 3 2 6 6 N 1.37868 * 126.65364 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00095 * 359.97438 * 6 5 4 8 8 O 1.21439 * 119.99831 * 359.97438 * 7 6 5 9 9 C 1.48710 * 119.99668 * 179.97438 * 7 6 5 10 10 O 1.21519 * 120.00226 * 359.97438 * 9 7 6 11 11 N 1.34777 * 119.99668 * 180.02562 * 9 7 6 12 12 C 1.36068 * 120.00112 * 180.02562 * 11 9 7 13 13 H 1.08000 * 119.99797 * 359.97438 * 12 11 9 14 14 C 1.39626 * 120.00255 * 180.02562 * 12 11 9 15 15 N 1.30992 * 119.99945 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00228 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47076 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47236 * 119.99574 * 16 14 12 19 19 H 1.48501 * 109.47340 * 240.00022 * 16 14 12 20 20 N 1.32033 * 106.68859 * 359.73073 * 5 4 3 21 21 H 1.09001 * 109.46953 * 90.02328 * 1 2 3 22 22 H 1.09000 * 109.47318 * 210.01926 * 1 2 3 23 23 H 1.09000 * 109.47161 * 330.02556 * 1 2 3 24 24 H 0.97005 * 119.99866 * 179.97438 * 6 5 4 25 25 H 0.96995 * 120.00069 * 359.97438 * 11 9 7 26 26 H 0.96995 * 119.99930 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2751 1.0489 0.0000 4 8 3.4424 0.7197 0.0005 5 6 3.5358 -0.6173 0.0003 6 7 4.6965 -1.3612 0.0003 7 6 5.8937 -0.7422 -0.0001 8 8 5.9500 0.4709 -0.0009 9 6 7.1457 -1.5447 0.0004 10 8 7.0893 -2.7586 0.0016 11 7 8.3429 -0.9257 0.0005 12 6 9.4885 -1.6599 0.0005 13 1 9.4384 -2.7388 0.0007 14 6 10.7288 -1.0187 0.0011 15 7 10.7895 0.2899 0.0013 16 14 12.3015 -2.0267 0.0018 17 1 11.9627 -3.4725 0.0021 18 1 13.0965 -1.7043 -1.2104 19 1 13.0954 -1.7046 1.2147 20 7 2.3006 -1.0836 0.0056 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3634 -0.8898 0.5141 23 1 -0.3633 0.8902 0.5134 24 1 4.6515 -2.3302 0.0005 25 1 8.3879 0.0432 -0.0001 26 1 11.6511 0.7353 0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127020363.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:02 Heat of formation + Delta-G solvation = 6.521074 kcal Electronic energy + Delta-G solvation = -16349.849302 eV Core-core repulsion = 13239.704287 eV Total energy + Delta-G solvation = -3110.145016 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.069 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -45.34132 -40.11707 -37.65003 -36.13355 -35.36679 -34.34525 -31.80578 -31.52594 -29.06438 -26.46406 -24.50652 -23.58468 -21.72726 -19.70566 -18.72818 -18.41203 -18.08212 -17.14996 -16.20244 -15.78336 -15.20990 -14.90248 -14.11988 -13.92077 -13.66149 -13.23078 -13.11432 -12.97050 -12.16607 -11.98578 -11.91815 -11.36847 -11.03106 -10.91055 -10.82150 -10.66364 -10.54296 -9.95609 -8.96234 -8.67852 -8.49074 -6.93138 -4.22017 1.11336 1.94683 1.94747 2.47247 3.01261 3.05357 3.11932 3.25523 3.82388 3.94948 3.97535 4.34050 4.77588 4.93468 5.26636 5.32724 5.34430 5.68492 5.80740 5.92612 6.20775 6.91733 7.07116 7.49131 7.83093 8.16087 8.35368 8.67787 9.00433 9.55411 10.20269 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.079508 B = 0.004710 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.080517 B = 5943.813709 C = 6280.749213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.186 3.814 3 N -0.394 5.394 4 O 0.083 5.917 5 C 0.420 3.580 6 N -0.590 5.590 7 C 0.509 3.491 8 O -0.496 6.496 9 C 0.388 3.612 10 O -0.593 6.593 11 N -0.480 5.480 12 C -0.299 4.299 13 H 0.120 0.880 14 C 0.033 3.967 15 N -0.853 5.853 16 Si 0.944 3.056 17 H -0.260 1.260 18 H -0.275 1.275 19 H -0.275 1.275 20 N -0.515 5.515 21 H 0.088 0.912 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.449 0.551 25 H 0.407 0.593 26 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.046 -0.856 -0.014 11.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.088 4.088 3 N -0.111 5.111 4 O 0.032 5.968 5 C 0.112 3.888 6 N -0.252 5.252 7 C 0.295 3.705 8 O -0.365 6.365 9 C 0.173 3.827 10 O -0.482 6.482 11 N -0.114 5.114 12 C -0.429 4.429 13 H 0.138 0.862 14 C -0.177 4.177 15 N -0.490 5.490 16 Si 0.769 3.231 17 H -0.184 1.184 18 H -0.200 1.200 19 H -0.200 1.200 20 N -0.261 5.261 21 H 0.106 0.894 22 H 0.109 0.891 23 H 0.105 0.895 24 H 0.293 0.707 25 H 0.242 0.758 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.361 -0.071 -0.005 11.362 hybrid contribution 0.936 -0.285 -0.011 0.978 sum -10.425 -0.355 -0.016 10.432 Atomic orbital electron populations 1.20108 0.82856 1.04525 1.04194 1.25553 1.00174 0.83431 0.99663 1.74643 0.88833 1.22986 1.24687 1.85613 1.21983 1.21500 1.67690 1.24307 0.88585 0.82154 0.93765 1.42436 0.99916 1.11627 1.71268 1.21485 0.84638 0.88470 0.75867 1.90830 1.86540 1.13960 1.45170 1.18125 0.82947 0.87610 0.94059 1.90641 1.85489 1.12344 1.59696 1.41578 1.03939 1.10913 1.54939 1.20089 0.81913 0.93882 1.47050 0.86244 1.25736 1.00628 0.96030 0.95258 1.69473 1.28481 1.08285 1.42757 0.85571 0.79247 0.79985 0.78326 1.18402 1.20005 1.20011 1.72218 0.97100 1.28222 1.28524 0.89371 0.89075 0.89545 0.70689 0.75757 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.51 36.01 0.38 -0.15 15 2 C 0.19 2.69 8.20 -156.49 -1.28 1.41 15 3 N -0.39 -6.69 12.15 31.13 0.38 -6.31 15 4 O 0.08 1.55 9.69 -4.50 -0.04 1.50 15 5 C 0.42 7.30 8.99 -87.18 -0.78 6.52 15 6 N -0.59 -10.18 5.35 -13.86 -0.07 -10.25 15 7 C 0.51 10.37 7.82 -11.93 -0.09 10.28 15 8 O -0.50 -10.95 15.27 -16.20 -0.25 -11.20 15 9 C 0.39 8.95 7.81 -11.93 -0.09 8.86 15 10 O -0.59 -14.56 16.03 5.35 0.09 -14.48 15 11 N -0.48 -11.79 5.24 -11.62 -0.06 -11.85 15 12 C -0.30 -7.57 9.67 -15.16 -0.15 -7.71 15 13 H 0.12 3.08 7.15 -52.49 -0.38 2.71 15 14 C 0.03 0.79 5.51 -17.39 -0.10 0.69 15 15 N -0.85 -21.18 13.03 55.53 0.72 -20.45 15 16 Si 0.94 18.54 29.56 -169.99 -5.02 13.52 15 17 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 18 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 20 N -0.52 -8.20 11.59 -12.98 -0.15 -8.35 15 21 H 0.09 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.09 0.69 8.14 -51.93 -0.42 0.26 15 23 H 0.09 0.66 8.14 -51.93 -0.42 0.23 15 24 H 0.45 6.89 8.27 -40.82 -0.34 6.55 15 25 H 0.41 10.01 7.35 -40.82 -0.30 9.71 15 26 H 0.29 6.53 8.30 -40.82 -0.34 6.19 15 LS Contribution 253.24 15.07 3.82 3.82 Total: -1.00 -28.65 253.24 -4.13 -32.78 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -1.41 Total: 11.38 kcal Atomic # 6 Polarization: 22.01 SS G_CDS: -2.12 Total: 19.89 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.82 Total: -57.22 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.21 Total: -24.17 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.52 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.65 -4.13 -32.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127020363.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.306 kcal (2) G-P(sol) polarization free energy of solvation -28.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds