Wall clock time and date at job start Mon Mar 30 2020 03:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30172 * 126.21474 * 2 1 4 4 N 1.28653 * 109.51914 * 179.97438 * 3 2 1 5 5 C 1.31035 * 109.31138 * 0.02562 * 4 3 2 6 6 N 1.38492 * 126.36386 * 179.97438 * 5 4 3 7 7 C 1.34775 * 119.99948 * 359.97353 * 6 5 4 8 8 O 1.21459 * 120.00315 * 359.97438 * 7 6 5 9 9 C 1.48694 * 119.99505 * 179.97438 * 7 6 5 10 10 O 1.21517 * 120.00147 * 0.02562 * 9 7 6 11 11 N 1.34775 * 119.99505 * 179.97438 * 9 7 6 12 12 C 1.36099 * 120.00087 * 180.02562 * 11 9 7 13 13 H 1.08009 * 119.99847 * 0.02562 * 12 11 9 14 14 C 1.39602 * 120.00630 * 180.02562 * 12 11 9 15 15 N 1.31008 * 119.99319 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00460 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46937 * 59.99870 * 16 14 12 18 18 H 1.48501 * 109.47339 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47033 * 300.00196 * 16 14 12 20 20 O 1.34601 * 107.27400 * 359.76951 * 5 4 3 21 21 H 1.09002 * 109.47152 * 90.02359 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.02460 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.02441 * 1 2 3 24 24 H 0.97001 * 119.99673 * 179.97438 * 6 5 4 25 25 H 0.97001 * 120.00380 * 0.02562 * 11 9 7 26 26 H 0.97000 * 119.99319 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0502 0.0000 4 7 3.5084 0.6806 0.0005 5 6 3.5682 -0.6283 0.0004 6 7 4.7197 -1.3977 0.0003 7 6 5.9285 -0.8016 -0.0001 8 8 6.0079 0.4104 -0.0009 9 6 7.1648 -1.6277 0.0004 10 8 7.0853 -2.8403 0.0007 11 7 8.3735 -1.0316 -0.0005 12 6 9.5052 -1.7877 -0.0006 13 1 9.4346 -2.8654 -0.0003 14 6 10.7573 -1.1703 -0.0010 15 7 10.8429 0.1370 -0.0008 16 14 12.3104 -2.2080 -0.0004 17 1 12.3330 -3.0659 -1.2123 18 1 13.4999 -1.3189 -0.0003 19 1 12.3331 -3.0643 1.2127 20 8 2.3025 -1.0863 0.0048 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3633 0.8902 0.5135 23 1 -0.3633 -0.8898 0.5142 24 1 4.6563 -2.3657 0.0005 25 1 8.4370 -0.0637 -0.0011 26 1 11.7129 0.5660 -0.0015 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127759945.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:04 Heat of formation + Delta-G solvation = -43.516588 kcal Electronic energy + Delta-G solvation = -16293.350393 eV Core-core repulsion = 13181.035581 eV Total energy + Delta-G solvation = -3112.314811 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.069 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.33969 -41.70701 -39.42791 -37.38528 -36.96493 -36.07218 -33.60135 -33.20823 -29.16123 -27.98465 -26.18825 -24.05452 -23.64310 -21.43929 -20.54929 -20.06473 -18.83860 -18.46759 -17.86856 -17.23359 -16.79207 -16.60307 -15.82456 -15.49723 -15.00086 -14.91613 -14.06093 -13.71197 -13.60695 -13.55260 -13.07026 -12.98604 -12.67455 -12.53101 -12.49597 -12.11860 -12.01052 -11.70634 -10.51960 -10.37032 -9.98101 -8.73940 -6.17385 -0.24706 0.12438 0.52960 1.29347 1.43818 1.51306 1.57024 1.92035 2.20860 2.24438 2.71872 3.07046 3.31383 3.57611 3.77049 3.86209 4.36470 4.64523 4.72460 4.80760 5.11173 5.19617 5.48508 5.67521 6.13914 6.43639 6.79791 7.11847 7.24052 7.64760 8.40689 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.079902 B = 0.004662 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.346804 B = 6004.076338 C = 6339.278429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.171 3.829 3 N -0.315 5.315 4 N -0.312 5.312 5 C 0.383 3.617 6 N -0.584 5.584 7 C 0.526 3.474 8 O -0.497 6.497 9 C 0.395 3.605 10 O -0.608 6.608 11 N -0.492 5.492 12 C -0.339 4.339 13 H 0.109 0.891 14 C -0.002 4.002 15 N -0.885 5.885 16 Si 1.015 2.985 17 H -0.261 1.261 18 H -0.268 1.268 19 H -0.262 1.262 20 O -0.230 6.230 21 H 0.122 0.878 22 H 0.123 0.877 23 H 0.118 0.882 24 H 0.447 0.553 25 H 0.403 0.597 26 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.051 -3.119 -0.014 15.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.042 4.042 3 N -0.160 5.160 4 N -0.167 5.167 5 C 0.082 3.918 6 N -0.245 5.245 7 C 0.311 3.689 8 O -0.366 6.366 9 C 0.180 3.820 10 O -0.498 6.498 11 N -0.126 5.126 12 C -0.469 4.469 13 H 0.127 0.873 14 C -0.208 4.208 15 N -0.521 5.521 16 Si 0.835 3.165 17 H -0.186 1.186 18 H -0.192 1.192 19 H -0.186 1.186 20 O -0.110 6.110 21 H 0.141 0.859 22 H 0.141 0.859 23 H 0.137 0.863 24 H 0.290 0.710 25 H 0.238 0.762 26 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.450 -1.615 -0.009 14.540 hybrid contribution 0.460 -1.349 -0.002 1.426 sum -13.990 -2.964 -0.011 14.300 Atomic orbital electron populations 1.20802 0.75015 1.07646 1.07273 1.29088 0.98898 0.77700 0.98482 1.74310 0.95652 1.27091 1.18993 1.75220 1.12372 1.06434 1.22709 1.23265 0.80773 0.87954 0.99855 1.41974 0.99032 1.11714 1.71762 1.20672 0.83752 0.88013 0.76472 1.90867 1.86136 1.14671 1.44891 1.18483 0.83434 0.87574 0.92517 1.90595 1.85936 1.13315 1.59967 1.41623 1.04296 1.10737 1.55896 1.20106 0.83166 0.93393 1.50233 0.87341 1.26665 1.02974 0.97294 0.93870 1.69542 1.29111 1.10322 1.43167 0.84676 0.74492 0.77494 0.79857 1.18594 1.19221 1.18611 1.84780 1.14769 1.38830 1.72616 0.85945 0.85879 0.86309 0.71026 0.76188 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.45 10.51 71.24 0.75 0.30 15 2 C 0.17 4.10 8.48 88.36 0.75 4.85 15 3 N -0.31 -10.60 12.21 -165.28 -2.02 -12.62 15 4 N -0.31 -12.68 10.46 -173.36 -1.81 -14.49 15 5 C 0.38 13.56 9.07 178.97 1.62 15.19 15 6 N -0.58 -20.93 5.38 -425.30 -2.29 -23.22 15 7 C 0.53 23.07 7.82 87.04 0.68 23.75 15 8 O -0.50 -24.29 15.18 -3.59 -0.05 -24.35 15 9 C 0.40 19.26 7.81 87.04 0.68 19.94 15 10 O -0.61 -30.87 16.03 -3.77 -0.06 -30.93 15 11 N -0.49 -25.72 5.24 -308.99 -1.62 -27.34 15 12 C -0.34 -18.01 9.67 84.36 0.82 -17.19 15 13 H 0.11 5.82 7.15 -2.91 -0.02 5.80 15 14 C 0.00 -0.09 5.51 85.15 0.47 0.38 15 15 N -0.88 -45.54 13.03 21.77 0.28 -45.26 15 16 Si 1.01 38.46 29.56 68.60 2.03 40.49 15 17 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15 18 H -0.27 -9.60 7.11 99.48 0.71 -8.89 15 19 H -0.26 -9.66 7.11 99.48 0.71 -8.95 15 20 O -0.23 -6.31 10.90 -8.72 -0.09 -6.40 15 21 H 0.12 0.60 8.14 -2.39 -0.02 0.58 15 22 H 0.12 0.79 8.14 -2.39 -0.02 0.77 15 23 H 0.12 0.49 8.14 -2.38 -0.02 0.47 15 24 H 0.45 13.52 8.27 -92.71 -0.77 12.75 15 25 H 0.40 21.40 7.35 -92.71 -0.68 20.72 15 26 H 0.29 13.81 8.30 -92.71 -0.77 13.04 15 Total: -1.00 -69.51 253.67 -0.04 -69.55 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: -0.18 Total: 27.34 kcal Atomic # 6 Polarization: 41.44 SS G_CDS: 5.77 Total: 47.21 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -7.45 Total: -122.92 kcal Atomic # 8 Polarization: -61.47 SS G_CDS: -0.21 Total: -61.68 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -69.51 -0.04 -69.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127759945.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.037 kcal (2) G-P(sol) polarization free energy of solvation -69.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds