Wall clock time and date at job start Mon Mar 30 2020 03:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48501 * 109.47245 * 239.99899 * 3 2 1 5 5 H 1.48504 * 109.46709 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47176 * 119.99422 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21283 * 119.99990 * 359.71991 * 11 10 9 13 13 C 1.50698 * 119.99538 * 179.72653 * 11 10 9 14 14 H 1.09004 * 109.47330 * 319.99391 * 13 11 10 15 15 N 1.46907 * 109.46627 * 199.99924 * 13 11 10 16 16 C 1.50691 * 109.47428 * 79.99707 * 13 11 10 17 17 C 1.33392 * 125.20563 * 259.71873 * 16 13 11 18 18 C 1.38427 * 114.92448 * 179.86067 * 17 16 13 19 19 C 1.33392 * 114.91617 * 0.42881 * 18 17 16 20 20 S 1.75878 * 109.59560 * 359.77148 * 19 18 17 21 21 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 23 23 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 24 24 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 25 25 H 1.00903 * 110.99748 * 299.99524 * 15 13 11 26 26 H 1.00897 * 111.00361 * 63.95474 * 15 13 11 27 27 H 1.08001 * 122.53464 * 0.02562 * 17 16 13 28 28 H 1.07994 * 122.54310 * 180.19832 * 18 17 16 29 29 H 1.08003 * 125.20023 * 179.75813 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5616 -5.1049 -0.0046 13 6 2.7334 -6.0286 -0.0087 14 1 3.5678 -5.7904 -0.6683 15 7 2.0623 -7.2446 -0.4877 16 6 3.2474 -6.2561 1.3894 17 6 4.4231 -5.8315 1.8551 18 6 4.6794 -6.1571 3.1759 19 6 3.7157 -6.8539 3.7802 20 16 2.3923 -7.1287 2.6547 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8898 23 1 0.6241 -2.5567 0.8902 24 1 3.1569 -3.4353 0.0021 25 1 1.2844 -7.4866 0.1077 26 1 1.7652 -7.1399 -1.4462 27 1 5.1209 -5.2735 1.2484 28 1 5.5920 -5.8719 3.6780 29 1 3.7439 -7.1970 4.8039 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133961216.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:54 Heat of formation + Delta-G solvation = -10.824097 kcal Electronic energy + Delta-G solvation = -14570.492279 eV Core-core repulsion = 12005.888335 eV Total energy + Delta-G solvation = -2564.603944 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.39211 -37.56232 -34.60220 -34.03808 -32.37578 -29.53265 -27.61098 -25.37887 -23.44943 -22.11324 -19.90284 -19.39444 -17.70106 -16.99653 -16.07407 -15.69876 -15.35023 -14.78294 -14.53074 -14.18487 -13.39136 -13.14414 -12.71791 -12.49891 -12.29052 -12.01481 -11.90309 -11.60349 -11.04232 -10.90444 -10.60899 -10.37149 -9.89930 -9.46602 -8.97100 -8.78151 -8.35221 -8.31962 -7.98016 -6.20033 -4.27519 1.04372 1.69283 2.10254 2.76809 3.18239 3.23134 3.27946 3.29370 3.99432 4.33144 4.53625 4.92092 5.09447 5.16097 5.28194 5.37821 5.54823 5.61678 6.12789 6.31292 6.50342 6.92304 7.22554 7.30333 7.35018 7.44916 7.59914 7.91902 8.50923 8.69146 8.95548 9.38900 10.90084 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.030065 B = 0.006056 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.090504 B = 4622.454209 C = 5093.220243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.700 5.700 11 C 0.469 3.531 12 O -0.555 6.555 13 C 0.141 3.859 14 H 0.115 0.885 15 N -0.817 5.817 16 C -0.157 4.157 17 C -0.134 4.134 18 C -0.132 4.132 19 C -0.224 4.224 20 S 0.126 5.874 21 H 0.267 0.733 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.392 0.608 25 H 0.348 0.652 26 H 0.350 0.650 27 H 0.141 0.859 28 H 0.139 0.861 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.999 -12.454 3.774 15.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.348 5.348 11 C 0.251 3.749 12 O -0.435 6.435 13 C 0.024 3.976 14 H 0.133 0.867 15 N -0.347 5.347 16 C -0.276 4.276 17 C -0.166 4.166 18 C -0.163 4.163 19 C -0.360 4.360 20 S 0.390 5.610 21 H 0.077 0.923 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.224 0.776 25 H 0.162 0.838 26 H 0.164 0.836 27 H 0.159 0.841 28 H 0.157 0.843 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.251 -13.566 4.006 15.896 hybrid contribution 1.409 2.477 -0.122 2.852 sum 8.661 -11.090 3.885 14.597 Atomic orbital electron populations 1.69960 1.06135 1.27481 1.48702 1.24950 0.94915 0.99470 0.94602 0.86466 0.79428 0.82244 0.78735 1.20029 1.21037 1.20007 1.21170 0.93226 0.90385 1.53501 0.91907 1.19144 0.88327 0.82033 0.97734 1.46505 1.11261 1.06172 1.70816 1.21481 0.90064 0.85395 0.77979 1.90669 1.16508 1.84763 1.51560 1.19931 0.96920 0.88946 0.91833 0.86747 1.59237 1.35480 1.31721 1.08224 1.24034 0.98931 1.06321 0.98292 1.20068 0.96902 1.03379 0.96206 1.20087 1.00624 1.00943 0.94602 1.25665 0.98542 1.07964 1.03799 1.84290 1.20644 1.53852 1.02248 0.92346 0.95486 0.95507 0.77565 0.83806 0.83634 0.84084 0.84328 0.82051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.29 55.43 0.74 -25.32 15 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 15 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 15 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 15 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 7 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 15 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 15 9 C 0.25 6.58 5.43 -5.19 -0.03 6.55 15 10 N -0.70 -14.67 5.55 -61.47 -0.34 -15.01 15 11 C 0.47 9.24 7.05 -10.99 -0.08 9.16 15 12 O -0.56 -12.99 16.25 5.55 0.09 -12.90 15 13 C 0.14 2.10 3.59 -70.02 -0.25 1.85 15 14 H 0.11 1.45 8.12 -51.93 -0.42 1.03 15 15 N -0.82 -11.25 8.91 -6.65 -0.06 -11.31 15 16 C -0.16 -2.28 5.44 -36.01 -0.20 -2.47 15 17 C -0.13 -1.73 10.04 -41.21 -0.41 -2.15 15 18 C -0.13 -1.56 10.18 -41.21 -0.42 -1.98 15 19 C -0.22 -2.66 11.23 29.04 0.33 -2.33 15 20 S 0.13 1.73 22.54 -107.50 -2.42 -0.70 15 21 H 0.27 7.37 8.31 -40.82 -0.34 7.04 15 22 H 0.03 0.79 8.14 -51.92 -0.42 0.37 15 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 24 H 0.39 7.07 8.32 -40.82 -0.34 6.73 15 25 H 0.35 5.07 7.91 -39.29 -0.31 4.76 15 26 H 0.35 4.45 9.06 -39.29 -0.36 4.09 15 27 H 0.14 1.52 8.06 -52.49 -0.42 1.10 15 28 H 0.14 1.30 8.06 -52.49 -0.42 0.87 15 29 H 0.16 1.48 8.06 -52.48 -0.42 1.06 15 LS Contribution 274.85 15.07 4.14 4.14 Total: -1.00 -31.68 274.85 -7.43 -39.11 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -3.08 Total: 10.95 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -1.48 Total: -4.72 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.34 Total: -51.64 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.90 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.42 Total: -0.70 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.68 -7.43 -39.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133961216.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.284 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds