Wall clock time and date at job start Mon Mar 30 2020 03:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48501 * 109.47245 * 239.99899 * 3 2 1 5 5 H 1.48504 * 109.46709 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47176 * 119.99422 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21283 * 119.99990 * 359.71991 * 11 10 9 13 13 C 1.50698 * 119.99538 * 179.72653 * 11 10 9 14 14 H 1.09004 * 109.47330 * 319.99391 * 13 11 10 15 15 N 1.46907 * 109.46627 * 199.99924 * 13 11 10 16 16 C 1.50691 * 109.47428 * 79.99707 * 13 11 10 17 17 C 1.33392 * 125.20563 * 259.71873 * 16 13 11 18 18 C 1.38427 * 114.92448 * 179.86067 * 17 16 13 19 19 C 1.33392 * 114.91617 * 0.42881 * 18 17 16 20 20 S 1.75878 * 109.59560 * 359.77148 * 19 18 17 21 21 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 23 23 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 24 24 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 25 25 H 1.00903 * 110.99748 * 299.99524 * 15 13 11 26 26 H 1.00897 * 111.00361 * 63.95474 * 15 13 11 27 27 H 1.08001 * 122.53464 * 0.02562 * 17 16 13 28 28 H 1.07994 * 122.54310 * 180.19832 * 18 17 16 29 29 H 1.08003 * 125.20023 * 179.75813 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5616 -5.1049 -0.0046 13 6 2.7334 -6.0286 -0.0087 14 1 3.5678 -5.7904 -0.6683 15 7 2.0623 -7.2446 -0.4877 16 6 3.2474 -6.2561 1.3894 17 6 4.4231 -5.8315 1.8551 18 6 4.6794 -6.1571 3.1759 19 6 3.7157 -6.8539 3.7802 20 16 2.3923 -7.1287 2.6547 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8898 23 1 0.6241 -2.5567 0.8902 24 1 3.1569 -3.4353 0.0021 25 1 1.2844 -7.4866 0.1077 26 1 1.7652 -7.1399 -1.4462 27 1 5.1209 -5.2735 1.2484 28 1 5.5920 -5.8719 3.6780 29 1 3.7439 -7.1970 4.8039 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133961216.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:54 Heat of formation + Delta-G solvation = -35.522372 kcal Electronic energy + Delta-G solvation = -14571.563277 eV Core-core repulsion = 12005.888335 eV Total energy + Delta-G solvation = -2565.674942 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.94487 -38.63347 -36.34770 -35.44532 -34.38161 -30.62883 -29.49990 -26.72759 -24.91326 -23.69630 -21.54261 -20.36984 -19.31210 -18.23535 -17.70071 -17.26840 -16.83465 -16.32482 -15.87888 -15.78501 -14.92006 -14.49753 -14.10529 -14.04402 -13.68379 -13.45314 -13.16138 -12.98816 -12.78079 -12.68619 -12.26173 -11.60135 -11.54616 -11.45306 -10.81704 -10.13019 -9.91299 -9.50338 -9.38016 -8.30871 -6.48061 0.04062 0.69040 1.13118 1.42382 1.46309 1.54490 1.55170 1.87972 2.30122 2.53583 3.03988 3.40218 3.73513 3.90055 4.17252 4.27948 4.63935 4.73538 5.04735 5.18614 5.19036 5.35967 5.42665 5.58283 5.61118 5.76805 5.82163 6.20859 6.61604 6.78133 7.19376 7.35887 8.80969 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.030065 B = 0.006056 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.090504 B = 4622.454209 C = 5093.220243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.696 5.696 11 C 0.468 3.532 12 O -0.598 6.598 13 C 0.158 3.842 14 H 0.144 0.856 15 N -0.808 5.808 16 C -0.189 4.189 17 C -0.125 4.125 18 C -0.140 4.140 19 C -0.213 4.213 20 S 0.081 5.919 21 H 0.269 0.731 22 H -0.011 1.011 23 H -0.016 1.016 24 H 0.409 0.591 25 H 0.343 0.657 26 H 0.356 0.644 27 H 0.165 0.835 28 H 0.169 0.831 29 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.064 -12.109 4.266 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.344 5.344 11 C 0.252 3.748 12 O -0.480 6.480 13 C 0.041 3.959 14 H 0.162 0.838 15 N -0.337 5.337 16 C -0.307 4.307 17 C -0.156 4.156 18 C -0.170 4.170 19 C -0.348 4.348 20 S 0.345 5.655 21 H 0.078 0.922 22 H 0.007 0.993 23 H 0.002 0.998 24 H 0.244 0.756 25 H 0.156 0.844 26 H 0.170 0.830 27 H 0.183 0.817 28 H 0.187 0.813 29 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 10.364 -13.264 4.490 17.421 hybrid contribution 0.451 2.280 -0.224 2.335 sum 10.815 -10.984 4.266 15.994 Atomic orbital electron populations 1.70129 1.08321 1.28663 1.49866 1.26066 0.95749 1.03925 0.93760 0.85213 0.77930 0.76547 0.79582 1.18504 1.21172 1.18622 1.21571 0.94315 0.90461 1.53076 0.89716 1.18559 0.88703 0.84466 0.93959 1.46232 1.11254 1.05554 1.71404 1.22554 0.90481 0.85939 0.75848 1.90642 1.18974 1.85428 1.52955 1.19891 0.96113 0.86592 0.93324 0.83831 1.59287 1.35243 1.30654 1.08490 1.24033 1.00032 1.08589 0.98017 1.20489 0.96367 1.01863 0.96889 1.20465 1.01665 1.00571 0.94301 1.26043 0.97163 1.07170 1.04461 1.84454 1.22561 1.54765 1.03742 0.92237 0.99316 0.99811 0.75560 0.84353 0.83029 0.81736 0.81329 0.79428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.14 13.29 21.45 0.28 -55.86 15 2 C 0.00 0.26 5.46 84.66 0.46 0.72 15 3 Si 0.98 41.94 29.54 68.60 2.03 43.96 15 4 H -0.26 -10.45 7.11 99.48 0.71 -9.75 15 5 H -0.29 -12.15 7.11 99.48 0.71 -11.44 15 6 H -0.26 -10.55 7.11 99.48 0.71 -9.84 15 7 C -0.56 -30.07 9.28 25.60 0.24 -29.83 15 8 H 0.08 4.10 7.60 -2.91 -0.02 4.08 15 9 C 0.27 14.61 5.43 85.63 0.46 15.08 15 10 N -0.70 -29.23 5.55 -466.78 -2.59 -31.82 15 11 C 0.47 18.56 7.05 87.66 0.62 19.18 15 12 O -0.60 -29.04 16.25 -3.04 -0.05 -29.09 15 13 C 0.16 4.51 3.59 43.42 0.16 4.66 15 14 H 0.14 3.23 8.12 -2.39 -0.02 3.21 15 15 N -0.81 -21.68 8.91 -174.95 -1.56 -23.24 15 16 C -0.19 -5.16 5.44 24.59 0.13 -5.02 15 17 C -0.12 -2.83 10.04 21.22 0.21 -2.62 15 18 C -0.14 -2.83 10.18 21.22 0.22 -2.61 15 19 C -0.21 -4.51 11.23 66.72 0.75 -3.76 15 20 S 0.08 2.18 22.54 -56.49 -1.27 0.90 15 21 H 0.27 15.17 8.31 -92.71 -0.77 14.40 15 22 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 15 23 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 15 24 H 0.41 14.16 8.32 -92.71 -0.77 13.39 15 25 H 0.34 10.08 7.91 -89.69 -0.71 9.37 15 26 H 0.36 8.81 9.06 -89.70 -0.81 7.99 15 27 H 0.17 2.87 8.06 -2.91 -0.02 2.85 15 28 H 0.17 2.38 8.06 -2.91 -0.02 2.36 15 29 H 0.19 2.85 8.06 -2.91 -0.02 2.83 15 Total: -1.00 -70.63 274.85 -1.00 -71.63 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: -1.09 Total: 27.71 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 3.25 Total: -4.20 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -3.86 Total: -110.92 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.05 Total: -29.09 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -1.27 Total: 0.90 kcal Total: -70.63 -1.00 -71.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133961216.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.110 kcal (2) G-P(sol) polarization free energy of solvation -70.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds