Wall clock time and date at job start Mon Mar 30 2020 04:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31457 * 1 3 3 Si 1.86798 * 120.00263 * 2 1 4 4 H 1.48497 * 109.46918 * 272.18168 * 3 2 1 5 5 H 1.48500 * 109.46902 * 32.18319 * 3 2 1 6 6 H 1.48502 * 109.47246 * 152.17876 * 3 2 1 7 7 C 1.38911 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99687 * 352.58482 * 7 2 1 9 9 N 1.37143 * 120.00295 * 172.57603 * 7 2 1 10 10 C 1.34705 * 126.80477 * 304.38840 * 9 7 2 11 11 O 1.21539 * 123.79413 * 359.96483 * 10 9 7 12 12 N 1.33879 * 112.41384 * 180.16108 * 10 9 7 13 13 C 1.34947 * 111.60588 * 359.53272 * 12 10 9 14 14 O 1.21238 * 127.27161 * 180.29582 * 13 12 10 15 15 C 1.46780 * 126.80603 * 124.05217 * 9 7 2 16 16 C 1.52581 * 110.57379 * 298.74180 * 15 9 7 17 17 C 1.53210 * 109.20089 * 67.07293 * 16 15 9 18 18 O 1.42906 * 109.33959 * 56.67052 * 17 16 15 19 19 C 1.42915 * 114.21719 * 298.38601 * 18 17 16 20 20 C 1.52587 * 110.56523 * 61.31089 * 15 9 7 21 21 H 0.96995 * 119.99695 * 359.97438 * 1 2 3 22 22 H 0.96993 * 124.19404 * 179.79946 * 12 10 9 23 23 H 1.08997 * 109.51822 * 186.99443 * 16 15 9 24 24 H 1.09001 * 109.51676 * 307.15836 * 16 15 9 25 25 H 1.09001 * 109.49350 * 296.71262 * 17 16 15 26 26 H 1.08999 * 109.51360 * 176.63998 * 17 16 15 27 27 H 1.08998 * 109.49110 * 301.65726 * 19 18 17 28 28 H 1.09005 * 109.51844 * 181.59075 * 19 18 17 29 29 H 1.08999 * 109.51309 * 52.84636 * 20 15 9 30 30 H 1.08998 * 109.51562 * 173.00766 * 20 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6177 0.0000 4 1 2.4500 2.0729 -1.3990 5 1 1.4699 2.6388 0.7457 6 1 3.5685 1.4272 0.6534 7 6 2.0091 -1.2030 0.0005 8 1 1.4758 -2.1344 0.1217 9 7 3.3719 -1.2081 -0.1529 10 6 4.0721 -0.6612 -1.1654 11 8 3.5627 -0.0756 -2.1007 12 7 5.3919 -0.8387 -1.0278 13 6 5.6871 -1.5154 0.1018 14 8 6.7875 -1.8253 0.5057 15 6 4.3571 -1.8047 0.7570 16 6 4.2842 -1.1472 2.1320 17 6 2.9444 -1.4973 2.7875 18 8 2.8079 -2.9182 2.8560 19 6 2.8018 -3.5685 1.5834 20 6 4.1353 -3.3098 0.8750 21 1 -0.4849 0.8400 0.0004 22 1 6.0540 -0.5171 -1.6595 23 1 5.1007 -1.5132 2.7544 24 1 4.3647 -0.0657 2.0231 25 1 2.1297 -1.0818 2.1943 26 1 2.9113 -1.0798 3.7938 27 1 1.9857 -3.1747 0.9776 28 1 2.6663 -4.6410 1.7231 29 1 4.1110 -3.7533 -0.1204 30 1 4.9464 -3.7532 1.4524 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147098492.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:22 Heat of formation + Delta-G solvation = -71.720138 kcal Electronic energy + Delta-G solvation = -18799.618507 eV Core-core repulsion = 15789.621041 eV Total energy + Delta-G solvation = -3009.997466 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.99714 -38.33862 -38.00863 -35.31318 -34.20863 -32.60926 -30.84643 -30.74391 -26.52297 -24.36290 -23.29423 -21.82806 -21.05821 -19.83830 -17.91341 -17.06924 -16.07858 -15.96417 -15.57990 -15.22893 -14.87817 -14.77695 -14.26473 -13.60096 -13.50490 -13.06923 -12.99048 -12.64517 -11.94537 -11.91702 -11.20059 -11.03839 -10.92028 -10.61649 -10.56643 -10.17870 -9.85461 -9.66081 -9.41426 -8.99408 -8.68679 -7.90805 -6.54168 -4.47494 2.13778 3.07503 3.17720 3.27436 3.36848 3.84185 3.97968 4.17733 4.47371 4.60841 4.79584 5.06492 5.10925 5.46725 5.76715 5.83527 5.91284 6.04215 6.13527 6.23317 6.28606 6.42066 6.47862 6.61303 6.80123 7.48409 7.72521 7.77408 7.95277 8.25140 8.55028 8.95618 9.47910 10.48979 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.021981 B = 0.016294 C = 0.011673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.541143 B = 1717.965896 C = 2398.046867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.089 3.911 3 Si 0.887 3.113 4 H -0.258 1.258 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.316 4.316 8 H 0.116 0.884 9 N -0.459 5.459 10 C 0.647 3.353 11 O -0.553 6.553 12 N -0.686 5.686 13 C 0.532 3.468 14 O -0.495 6.495 15 C 0.100 3.900 16 C -0.137 4.137 17 C 0.052 3.948 18 O -0.385 6.385 19 C 0.050 3.950 20 C -0.133 4.133 21 H 0.280 0.720 22 H 0.417 0.583 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.233 -2.914 3.502 7.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.122 4.122 3 Si 0.714 3.286 4 H -0.182 1.182 5 H -0.216 1.216 6 H -0.198 1.198 7 C -0.441 4.441 8 H 0.133 0.867 9 N -0.188 5.188 10 C 0.351 3.649 11 O -0.430 6.430 12 N -0.355 5.355 13 C 0.318 3.682 14 O -0.367 6.367 15 C 0.011 3.989 16 C -0.176 4.176 17 C -0.024 4.024 18 O -0.304 6.304 19 C -0.027 4.027 20 C -0.172 4.172 21 H 0.090 0.910 22 H 0.258 0.742 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.118 0.882 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.085 -2.815 3.491 7.559 hybrid contribution 0.995 1.282 -0.672 1.757 sum 7.079 -1.532 2.819 7.773 Atomic orbital electron populations 1.69647 1.06150 1.28783 1.44106 1.25507 0.95172 0.99103 0.92392 0.86595 0.79515 0.82741 0.79713 1.18221 1.21617 1.19771 1.18668 0.75737 0.95149 1.54565 0.86691 1.43219 1.05084 1.53939 1.16546 1.16838 0.80275 0.83437 0.84392 1.90883 1.71154 1.47117 1.33800 1.44611 1.10453 1.55047 1.25433 1.20898 0.90849 0.75678 0.80732 1.90721 1.25800 1.52538 1.67624 1.21256 0.87207 0.96932 0.93462 1.22148 1.00818 1.01042 0.93572 1.22828 0.97057 0.81692 1.00811 1.87776 1.94209 1.19744 1.28677 1.22949 0.96867 0.97023 0.85832 1.22106 1.00688 0.92200 1.02238 0.90991 0.74232 0.90430 0.90702 0.88200 0.89891 0.88879 0.89772 0.90590 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.90 13.96 55.49 0.77 -22.13 16 2 C 0.09 2.31 4.98 -17.46 -0.09 2.22 16 3 Si 0.89 21.44 25.22 -169.99 -4.29 17.15 16 4 H -0.26 -6.70 6.87 56.52 0.39 -6.31 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.35 6.25 56.52 0.35 -5.99 16 7 C -0.32 -7.69 6.47 -14.93 -0.10 -7.78 16 8 H 0.12 2.86 5.31 -52.48 -0.28 2.59 16 9 N -0.46 -10.17 1.89 -107.76 -0.20 -10.38 16 10 C 0.65 14.66 6.92 -87.78 -0.61 14.05 16 11 O -0.55 -14.34 15.28 5.33 0.08 -14.26 16 12 N -0.69 -12.84 5.72 -15.86 -0.09 -12.93 16 13 C 0.53 9.94 7.45 -10.73 -0.08 9.86 16 14 O -0.49 -9.59 18.02 5.59 0.10 -9.49 16 15 C 0.10 1.90 0.83 -133.07 -0.11 1.79 16 16 C -0.14 -2.46 5.17 -26.84 -0.14 -2.60 16 17 C 0.05 0.95 6.57 37.27 0.24 1.19 16 18 O -0.39 -6.99 10.75 -35.23 -0.38 -7.36 16 19 C 0.05 0.84 6.57 37.26 0.24 1.08 16 20 C -0.13 -2.23 5.17 -26.84 -0.14 -2.37 16 21 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 22 H 0.42 6.51 8.96 -40.82 -0.37 6.14 16 23 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 24 H 0.07 1.39 7.30 -51.93 -0.38 1.01 16 25 H 0.10 2.08 5.16 -51.93 -0.27 1.82 16 26 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.09 1.79 4.31 -51.93 -0.22 1.56 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 241.26 15.07 3.64 3.64 Total: -1.00 -29.04 241.26 -3.96 -33.01 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -2.82 Total: 5.31 kcal Atomic # 6 Polarization: 18.22 SS G_CDS: -0.77 Total: 17.45 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.48 Total: -45.43 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.20 Total: -31.12 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.29 Total: 17.15 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.04 -3.96 -33.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147098492.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.714 kcal (2) G-P(sol) polarization free energy of solvation -29.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds