Wall clock time and date at job start Mon Mar 30 2020 03:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30701 * 1 3 3 Si 1.86799 * 120.00100 * 2 1 4 4 H 1.48496 * 109.47188 * 274.98556 * 3 2 1 5 5 H 1.48502 * 109.47222 * 34.98981 * 3 2 1 6 6 H 1.48499 * 109.46947 * 154.98224 * 3 2 1 7 7 C 1.40248 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99789 * 186.48416 * 7 2 1 9 9 C 1.39914 * 120.00070 * 6.48372 * 7 2 1 10 10 N 1.31866 * 125.55357 * 173.71663 * 9 7 2 11 11 C 1.30449 * 115.68399 * 180.17891 * 10 9 7 12 12 C 1.50704 * 122.10055 * 179.80627 * 11 10 9 13 13 H 1.09002 * 110.82754 * 336.90730 * 12 11 10 14 14 C 1.54992 * 110.91235 * 213.25733 * 12 11 10 15 15 O 1.44373 * 103.49181 * 204.77847 * 14 12 11 16 16 C 1.43741 * 106.97845 * 40.05970 * 15 14 12 17 17 C 1.54096 * 107.29288 * 333.48860 * 16 15 14 18 18 H 1.09000 * 110.49263 * 120.70091 * 17 16 15 19 19 N 1.46904 * 110.49060 * 243.35230 * 17 16 15 20 20 C 1.34860 * 115.80012 * 359.53882 * 11 10 9 21 21 S 1.71037 * 109.23078 * 0.24672 * 20 11 10 22 22 H 0.97008 * 119.99763 * 359.97438 * 1 2 3 23 23 H 1.08999 * 110.61565 * 323.28202 * 14 12 11 24 24 H 1.09007 * 110.61869 * 86.11743 * 14 12 11 25 25 H 1.09001 * 109.87696 * 92.90905 * 16 15 14 26 26 H 1.08997 * 109.88296 * 213.91205 * 16 15 14 27 27 H 1.00905 * 110.99960 * 294.76874 * 19 17 16 28 28 H 1.00906 * 110.99667 * 58.71374 * 19 17 16 29 29 H 1.08005 * 125.38343 * 180.27723 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.3832 2.1072 -1.3947 5 1 1.4952 2.6199 0.8028 6 1 3.5873 1.4120 0.5921 7 6 2.0082 -1.2146 0.0005 8 1 3.0830 -1.2176 0.1062 9 6 1.3153 -2.4225 -0.1357 10 7 1.8676 -3.6127 -0.2666 11 6 1.0368 -4.6117 -0.3838 12 6 1.5112 -6.0330 -0.5455 13 1 2.5239 -6.0602 -0.9478 14 6 0.5385 -6.8424 -1.4404 15 8 0.7545 -8.2077 -1.0238 16 6 0.9001 -8.1921 0.4061 17 6 1.4295 -6.7988 0.7975 18 1 0.7356 -6.3041 1.4771 19 7 2.7607 -6.9076 1.4091 20 6 -0.2731 -4.2933 -0.3454 21 16 -0.4363 -2.6017 -0.1531 22 1 -0.4850 0.8401 0.0004 23 1 -0.4930 -6.5430 -1.2548 24 1 0.7901 -6.7154 -2.4935 25 1 -0.0661 -8.3677 0.8790 26 1 1.6088 -8.9605 0.7150 27 1 2.7164 -7.4058 2.2855 28 1 3.4143 -7.3453 0.7771 29 1 -1.0899 -4.9956 -0.4233 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165371686.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:40 Heat of formation + Delta-G solvation = -25.274687 kcal Electronic energy + Delta-G solvation = -14894.817862 eV Core-core repulsion = 12329.587293 eV Total energy + Delta-G solvation = -2565.230569 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -39.57409 -37.29063 -34.25231 -33.85787 -31.03706 -28.15531 -27.34241 -26.09970 -23.54748 -21.65580 -20.54614 -18.24629 -17.62403 -16.38382 -15.84928 -15.30006 -15.11110 -15.04291 -14.74003 -13.58810 -13.33883 -12.78449 -12.68372 -12.11344 -11.94766 -11.78514 -11.57125 -11.26424 -10.95138 -10.63418 -10.50905 -10.36725 -9.61105 -9.52952 -9.36657 -8.41221 -7.84962 -7.69568 -7.11775 -7.04603 -4.72196 2.51778 2.93931 3.00778 3.02841 3.55792 3.70227 4.01124 4.06210 4.21383 4.71118 4.89991 5.05865 5.29303 5.37139 5.47102 5.61614 5.80521 5.96556 6.10723 6.24980 6.51334 6.70174 6.82928 6.97604 7.24803 7.35867 7.60425 7.65626 7.92963 8.33051 8.44397 9.77615 9.85565 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.047330 B = 0.006430 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.447812 B = 4353.757469 C = 4672.513584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.056 3.944 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.374 4.374 8 H 0.103 0.897 9 C 0.207 3.793 10 N -0.588 5.588 11 C 0.129 3.871 12 C -0.033 4.033 13 H 0.090 0.910 14 C 0.052 3.948 15 O -0.384 6.384 16 C 0.013 3.987 17 C 0.073 3.927 18 H 0.096 0.904 19 N -0.827 5.827 20 C -0.470 4.470 21 S 0.096 5.904 22 H 0.297 0.703 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.336 0.664 28 H 0.340 0.660 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 -5.788 0.918 5.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.167 4.167 3 Si 0.764 3.236 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.417 4.417 8 H 0.121 0.879 9 C -0.046 4.046 10 N -0.310 5.310 11 C -0.013 4.013 12 C -0.055 4.055 13 H 0.108 0.892 14 C -0.025 4.025 15 O -0.302 6.302 16 C -0.066 4.066 17 C -0.040 4.040 18 H 0.114 0.886 19 N -0.356 5.356 20 C -0.614 4.614 21 S 0.355 5.645 22 H 0.110 0.890 23 H 0.087 0.913 24 H 0.111 0.889 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.149 0.851 28 H 0.153 0.847 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.331 -4.363 0.906 4.469 hybrid contribution 0.244 -1.179 -0.047 1.205 sum -0.087 -5.542 0.859 5.609 Atomic orbital electron populations 1.68868 1.07737 1.30778 1.33357 1.26184 0.95085 1.02629 0.92808 0.85717 0.80172 0.78297 0.79407 1.19026 1.19765 1.17993 1.19008 0.96189 0.87574 1.38907 0.87906 1.23941 0.91063 0.94147 0.95431 1.67229 1.34846 0.97478 1.31408 1.19098 0.88718 0.93262 1.00185 1.21058 0.99737 0.91271 0.93455 0.89162 1.23738 0.99329 0.80027 0.99358 1.88797 1.93540 1.27380 1.20526 1.24157 1.00680 0.98821 0.82938 1.22877 0.91144 0.92986 0.96990 0.88618 1.58677 1.08083 1.60792 1.08025 1.25682 0.99375 1.04097 1.32234 1.84162 1.12102 0.95720 1.72510 0.89001 0.91258 0.88940 0.92603 0.90634 0.85127 0.84718 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.74 10.71 55.56 0.60 -18.15 15 2 C 0.06 1.31 5.49 -17.28 -0.09 1.21 15 3 Si 0.94 17.55 29.57 -169.99 -5.03 12.52 15 4 H -0.27 -4.89 7.11 56.52 0.40 -4.48 15 5 H -0.27 -4.91 7.11 56.52 0.40 -4.51 15 6 H -0.26 -4.75 7.11 56.52 0.40 -4.35 15 7 C -0.37 -9.79 9.44 -38.20 -0.36 -10.15 15 8 H 0.10 2.62 7.86 -52.49 -0.41 2.20 15 9 C 0.21 5.70 7.13 -16.91 -0.12 5.58 15 10 N -0.59 -15.98 10.68 -9.33 -0.10 -16.08 15 11 C 0.13 3.11 5.66 -84.38 -0.48 2.63 15 12 C -0.03 -0.66 3.28 -89.76 -0.29 -0.95 15 13 H 0.09 1.83 7.97 -51.93 -0.41 1.42 15 14 C 0.05 0.91 7.01 38.21 0.27 1.18 15 15 O -0.38 -6.40 11.52 -35.23 -0.41 -6.80 15 16 C 0.01 0.19 7.47 37.73 0.28 0.48 15 17 C 0.07 1.23 3.77 -66.18 -0.25 0.98 15 18 H 0.10 1.78 7.85 -51.93 -0.41 1.37 15 19 N -0.83 -12.58 9.19 -3.37 -0.03 -12.61 15 20 C -0.47 -11.23 10.08 29.53 0.30 -10.93 15 21 S 0.10 2.45 20.22 -107.50 -2.17 0.28 15 22 H 0.30 6.38 8.29 -40.82 -0.34 6.04 15 23 H 0.07 1.21 6.10 -51.93 -0.32 0.89 15 24 H 0.09 1.51 8.14 -51.93 -0.42 1.08 15 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 26 H 0.08 0.92 7.94 -51.93 -0.41 0.51 15 27 H 0.34 4.13 9.08 -39.29 -0.36 3.77 15 28 H 0.34 4.67 8.90 -39.29 -0.35 4.32 15 29 H 0.13 2.77 6.63 -52.48 -0.35 2.42 15 LS Contribution 259.46 15.07 3.91 3.91 Total: -1.00 -28.92 259.46 -6.98 -35.90 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -3.00 Total: 11.01 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -0.75 Total: -9.99 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.46 Total: -46.84 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.41 Total: -6.80 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.17 Total: 0.28 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.92 -6.98 -35.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165371686.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.623 kcal (2) G-P(sol) polarization free energy of solvation -28.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds