Wall clock time and date at job start Mon Mar 30 2020 03:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30701 * 1 3 3 Si 1.86799 * 120.00100 * 2 1 4 4 H 1.48496 * 109.47188 * 274.98556 * 3 2 1 5 5 H 1.48502 * 109.47222 * 34.98981 * 3 2 1 6 6 H 1.48499 * 109.46947 * 154.98224 * 3 2 1 7 7 C 1.40248 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99789 * 186.48416 * 7 2 1 9 9 C 1.39914 * 120.00070 * 6.48372 * 7 2 1 10 10 N 1.31866 * 125.55357 * 173.71663 * 9 7 2 11 11 C 1.30449 * 115.68399 * 180.17891 * 10 9 7 12 12 C 1.50704 * 122.10055 * 179.80627 * 11 10 9 13 13 H 1.09002 * 110.82754 * 336.90730 * 12 11 10 14 14 C 1.54992 * 110.91235 * 213.25733 * 12 11 10 15 15 O 1.44373 * 103.49181 * 204.77847 * 14 12 11 16 16 C 1.43741 * 106.97845 * 40.05970 * 15 14 12 17 17 C 1.54096 * 107.29288 * 333.48860 * 16 15 14 18 18 H 1.09000 * 110.49263 * 120.70091 * 17 16 15 19 19 N 1.46904 * 110.49060 * 243.35230 * 17 16 15 20 20 C 1.34860 * 115.80012 * 359.53882 * 11 10 9 21 21 S 1.71037 * 109.23078 * 0.24672 * 20 11 10 22 22 H 0.97008 * 119.99763 * 359.97438 * 1 2 3 23 23 H 1.08999 * 110.61565 * 323.28202 * 14 12 11 24 24 H 1.09007 * 110.61869 * 86.11743 * 14 12 11 25 25 H 1.09001 * 109.87696 * 92.90905 * 16 15 14 26 26 H 1.08997 * 109.88296 * 213.91205 * 16 15 14 27 27 H 1.00905 * 110.99960 * 294.76874 * 19 17 16 28 28 H 1.00906 * 110.99667 * 58.71374 * 19 17 16 29 29 H 1.08005 * 125.38343 * 180.27723 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.3832 2.1072 -1.3947 5 1 1.4952 2.6199 0.8028 6 1 3.5873 1.4120 0.5921 7 6 2.0082 -1.2146 0.0005 8 1 3.0830 -1.2176 0.1062 9 6 1.3153 -2.4225 -0.1357 10 7 1.8676 -3.6127 -0.2666 11 6 1.0368 -4.6117 -0.3838 12 6 1.5112 -6.0330 -0.5455 13 1 2.5239 -6.0602 -0.9478 14 6 0.5385 -6.8424 -1.4404 15 8 0.7545 -8.2077 -1.0238 16 6 0.9001 -8.1921 0.4061 17 6 1.4295 -6.7988 0.7975 18 1 0.7356 -6.3041 1.4771 19 7 2.7607 -6.9076 1.4091 20 6 -0.2731 -4.2933 -0.3454 21 16 -0.4363 -2.6017 -0.1531 22 1 -0.4850 0.8401 0.0004 23 1 -0.4930 -6.5430 -1.2548 24 1 0.7901 -6.7154 -2.4935 25 1 -0.0661 -8.3677 0.8790 26 1 1.6088 -8.9605 0.7150 27 1 2.7164 -7.4058 2.2855 28 1 3.4143 -7.3453 0.7771 29 1 -1.0899 -4.9956 -0.4233 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165371686.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:40 Heat of formation + Delta-G solvation = -47.458780 kcal Electronic energy + Delta-G solvation = -14895.779837 eV Core-core repulsion = 12329.587293 eV Total energy + Delta-G solvation = -2566.192543 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.01663 -39.08258 -36.04173 -35.23583 -32.66927 -29.93571 -28.56875 -27.98529 -25.20948 -23.17669 -22.05741 -19.97802 -19.55666 -18.01944 -17.20873 -16.95065 -16.76628 -16.38539 -16.06140 -15.20802 -14.81981 -14.51573 -14.21485 -13.92675 -13.61027 -13.18714 -13.15021 -12.78153 -12.45034 -12.30018 -11.99752 -11.97430 -11.32861 -11.24766 -10.83986 -9.83998 -9.70731 -9.62023 -9.03423 -8.88084 -6.69049 0.65293 1.40335 1.49457 1.57761 1.59215 2.05856 2.21334 2.28297 2.86741 3.13849 3.45638 3.65840 3.93270 3.98970 4.06478 4.24294 4.46985 4.66620 4.71129 4.76549 4.91809 4.97603 5.00770 5.36839 5.72776 5.75433 5.96046 6.17664 6.41956 6.49425 6.60391 7.87025 8.03244 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.047330 B = 0.006430 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.447812 B = 4353.757469 C = 4672.513584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.021 3.979 3 Si 1.018 2.982 4 H -0.258 1.258 5 H -0.257 1.257 6 H -0.255 1.255 7 C -0.402 4.402 8 H 0.100 0.900 9 C 0.174 3.826 10 N -0.622 5.622 11 C 0.123 3.877 12 C -0.038 4.038 13 H 0.079 0.921 14 C 0.062 3.938 15 O -0.388 6.388 16 C 0.019 3.981 17 C 0.081 3.919 18 H 0.075 0.925 19 N -0.840 5.840 20 C -0.476 4.476 21 S 0.077 5.923 22 H 0.311 0.689 23 H 0.068 0.932 24 H 0.100 0.900 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.354 0.646 28 H 0.349 0.651 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.412 -5.769 1.114 5.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.199 4.199 3 Si 0.835 3.165 4 H -0.182 1.182 5 H -0.181 1.181 6 H -0.179 1.179 7 C -0.444 4.444 8 H 0.117 0.883 9 C -0.078 4.078 10 N -0.344 5.344 11 C -0.017 4.017 12 C -0.060 4.060 13 H 0.098 0.902 14 C -0.015 4.015 15 O -0.307 6.307 16 C -0.059 4.059 17 C -0.033 4.033 18 H 0.093 0.907 19 N -0.372 5.372 20 C -0.619 4.619 21 S 0.335 5.665 22 H 0.124 0.876 23 H 0.086 0.914 24 H 0.118 0.882 25 H 0.089 0.911 26 H 0.122 0.878 27 H 0.168 0.832 28 H 0.163 0.837 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.152 -4.391 1.111 4.532 hybrid contribution 0.173 -1.176 -0.076 1.191 sum 0.021 -5.567 1.035 5.662 Atomic orbital electron populations 1.68894 1.09082 1.32649 1.31850 1.27195 0.95907 1.05500 0.91318 0.84625 0.78660 0.73313 0.79863 1.18195 1.18050 1.17880 1.19360 0.96404 0.88625 1.40042 0.88256 1.24406 0.92132 0.94952 0.96293 1.67297 1.36011 0.98132 1.33000 1.19658 0.88689 0.94682 0.98716 1.21119 0.99568 0.89391 0.95886 0.90230 1.23610 0.98485 0.80073 0.99363 1.88795 1.93581 1.26490 1.21808 1.24227 1.02135 0.97795 0.81790 1.22652 0.91653 0.93855 0.95101 0.90669 1.58584 1.07565 1.61865 1.09153 1.25825 1.00012 1.03430 1.32674 1.83968 1.11463 0.97473 1.73608 0.87585 0.91392 0.88157 0.91147 0.87815 0.83153 0.83682 0.83538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.10 10.71 21.88 0.23 -37.86 15 2 C 0.02 1.00 5.49 85.35 0.47 1.47 15 3 Si 1.02 34.82 29.57 68.60 2.03 36.85 15 4 H -0.26 -8.49 7.11 99.48 0.71 -7.78 15 5 H -0.26 -8.09 7.11 99.48 0.71 -7.38 15 6 H -0.26 -8.64 7.11 99.48 0.71 -7.93 15 7 C -0.40 -21.40 9.44 23.16 0.22 -21.18 15 8 H 0.10 5.18 7.86 -2.91 -0.02 5.16 15 9 C 0.17 9.82 7.13 85.09 0.61 10.42 15 10 N -0.62 -34.64 10.68 -183.43 -1.96 -36.60 15 11 C 0.12 6.00 5.66 41.99 0.24 6.24 15 12 C -0.04 -1.47 3.28 -10.24 -0.03 -1.50 15 13 H 0.08 3.24 7.97 -2.39 -0.02 3.22 15 14 C 0.06 2.07 7.01 72.66 0.51 2.58 15 15 O -0.39 -12.04 11.52 -148.98 -1.72 -13.76 15 16 C 0.02 0.51 7.47 72.35 0.54 1.05 15 17 C 0.08 2.63 3.77 45.91 0.17 2.80 15 18 H 0.08 2.76 7.85 -2.39 -0.02 2.74 15 19 N -0.84 -24.50 9.19 -164.57 -1.51 -26.02 15 20 C -0.48 -22.97 10.08 67.04 0.68 -22.29 15 21 S 0.08 3.99 20.22 -56.49 -1.14 2.85 15 22 H 0.31 13.00 8.29 -92.70 -0.77 12.24 15 23 H 0.07 2.29 6.10 -2.39 -0.01 2.28 15 24 H 0.10 3.16 8.14 -2.38 -0.02 3.14 15 25 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 26 H 0.10 2.17 7.94 -2.39 -0.02 2.15 15 27 H 0.35 8.05 9.08 -89.69 -0.81 7.23 15 28 H 0.35 9.07 8.90 -89.69 -0.80 8.27 15 29 H 0.15 6.32 6.63 -2.91 -0.02 6.31 15 Total: -1.00 -62.60 259.46 -1.08 -63.68 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: -0.41 Total: 31.29 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 3.40 Total: -20.43 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -3.24 Total: -100.48 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -1.72 Total: -13.76 kcal Atomic # 14 Polarization: 34.82 SS G_CDS: 2.03 Total: 36.85 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.14 Total: 2.85 kcal Total: -62.60 -1.08 -63.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165371686.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.220 kcal (2) G-P(sol) polarization free energy of solvation -62.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds