Wall clock time and date at job start Mon Mar 30 2020 03:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30709 * 1 3 3 Si 1.86798 * 119.99582 * 2 1 4 4 H 1.48497 * 109.46905 * 264.98537 * 3 2 1 5 5 H 1.48501 * 109.46749 * 144.99156 * 3 2 1 6 6 H 1.48496 * 109.47434 * 24.99200 * 3 2 1 7 7 C 1.40242 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00148 * 187.87297 * 7 2 1 9 9 C 1.39913 * 120.00079 * 7.86707 * 7 2 1 10 10 N 1.31862 * 125.55564 * 187.57824 * 9 7 2 11 11 C 1.30455 * 115.68900 * 179.82183 * 10 9 7 12 12 C 1.50707 * 122.10376 * 180.22878 * 11 10 9 13 13 H 1.09000 * 110.45890 * 25.96628 * 12 11 10 14 14 C 1.54472 * 110.51526 * 148.57803 * 12 11 10 15 15 O 1.44646 * 104.69511 * 142.52170 * 14 12 11 16 16 C 1.44416 * 105.36961 * 319.65326 * 15 14 12 17 17 C 1.54478 * 104.80579 * 40.43469 * 16 15 14 18 18 H 1.09003 * 110.51143 * 94.66151 * 17 16 15 19 19 N 1.46895 * 110.63079 * 217.31754 * 17 16 15 20 20 C 1.34855 * 115.79642 * 0.48022 * 11 10 9 21 21 S 1.71040 * 109.23329 * 359.74544 * 20 11 10 22 22 H 0.96995 * 119.99713 * 359.97438 * 1 2 3 23 23 H 1.08997 * 110.37164 * 261.45352 * 14 12 11 24 24 H 1.09003 * 110.37417 * 23.78944 * 14 12 11 25 25 H 1.09003 * 110.37513 * 281.60395 * 16 15 14 26 26 H 1.09001 * 110.46550 * 159.31509 * 16 15 14 27 27 H 1.00898 * 111.00509 * 294.71018 * 19 17 16 28 28 H 1.00903 * 111.00041 * 58.66153 * 19 17 16 29 29 H 1.07999 * 125.38198 * 179.70592 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.5944 1.9853 -1.3947 5 1 3.4816 1.4731 0.8032 6 1 1.3895 2.6809 0.5915 7 6 2.0083 -1.2145 0.0005 8 1 3.0806 -1.2189 0.1287 9 6 1.3186 -2.4206 -0.1648 10 7 1.8405 -3.6253 -0.0422 11 6 1.0186 -4.6199 -0.2349 12 6 1.4604 -6.0567 -0.1259 13 1 2.3204 -6.1414 0.5385 14 6 0.2993 -6.9435 0.3757 15 8 0.4397 -8.1817 -0.3586 16 6 0.7979 -7.7916 -1.7021 17 6 1.7967 -6.6270 -1.5219 18 1 2.8221 -6.9959 -1.5469 19 7 1.5932 -5.6056 -2.5579 20 6 -0.2499 -4.2817 -0.5430 21 16 -0.3859 -2.5771 -0.5781 22 1 -0.4849 0.8400 0.0004 23 1 0.3935 -7.1219 1.4469 24 1 -0.6595 -6.4763 0.1509 25 1 -0.0838 -7.4543 -2.2471 26 1 1.2727 -8.6211 -2.2261 27 1 1.8108 -5.9704 -3.4731 28 1 0.6523 -5.2425 -2.5278 29 1 -1.0529 -4.9772 -0.7375 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165371745.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:46 Heat of formation + Delta-G solvation = -20.290185 kcal Electronic energy + Delta-G solvation = -15108.716179 eV Core-core repulsion = 12543.701754 eV Total energy + Delta-G solvation = -2565.014425 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.64349 -37.20340 -34.27493 -33.64597 -30.77865 -28.23096 -27.25793 -26.11899 -23.53619 -21.81523 -20.36157 -17.82555 -17.54883 -16.78436 -15.80967 -15.28202 -15.15052 -14.90660 -14.47513 -13.58862 -13.31163 -12.73858 -12.49026 -12.07929 -11.98635 -11.92366 -11.38920 -11.13529 -10.85410 -10.65034 -10.49534 -10.37733 -9.62268 -9.50890 -9.27363 -8.21055 -7.81307 -7.66062 -7.16521 -6.95110 -4.67294 2.53967 2.95121 3.00387 3.05637 3.58062 3.71779 4.02534 4.14625 4.22614 4.94616 5.03905 5.08008 5.20889 5.38937 5.46935 5.64460 5.83570 6.06969 6.13213 6.17261 6.46885 6.68539 6.84676 6.94460 7.27063 7.56717 7.65715 7.89815 7.95119 8.35448 8.48192 9.80796 9.88931 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.052015 B = 0.006679 C = 0.006441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.181056 B = 4191.420886 C = 4346.049788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.059 3.941 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.258 1.258 6 H -0.274 1.274 7 C -0.379 4.379 8 H 0.102 0.898 9 C 0.218 3.782 10 N -0.587 5.587 11 C 0.153 3.847 12 C -0.045 4.045 13 H 0.087 0.913 14 C 0.047 3.953 15 O -0.381 6.381 16 C 0.011 3.989 17 C 0.077 3.923 18 H 0.089 0.911 19 N -0.823 5.823 20 C -0.474 4.474 21 S 0.083 5.917 22 H 0.296 0.704 23 H 0.090 0.910 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.328 0.672 28 H 0.352 0.648 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.329 -4.851 -2.723 5.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.164 4.164 3 Si 0.761 3.239 4 H -0.188 1.188 5 H -0.182 1.182 6 H -0.199 1.199 7 C -0.422 4.422 8 H 0.120 0.880 9 C -0.035 4.035 10 N -0.308 5.308 11 C 0.011 3.989 12 C -0.066 4.066 13 H 0.106 0.894 14 C -0.030 4.030 15 O -0.299 6.299 16 C -0.069 4.069 17 C -0.037 4.037 18 H 0.107 0.893 19 N -0.355 5.355 20 C -0.618 4.618 21 S 0.341 5.659 22 H 0.109 0.891 23 H 0.108 0.892 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.140 0.860 28 H 0.168 0.832 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.323 -3.834 -2.333 4.500 hybrid contribution -0.255 -0.773 -0.429 0.921 sum -0.578 -4.608 -2.763 5.403 Atomic orbital electron populations 1.69011 1.07678 1.30740 1.33171 1.26166 0.95081 1.02524 0.92628 0.85795 0.79953 0.78307 0.79825 1.18825 1.18165 1.19893 1.18958 0.96287 0.87705 1.39217 0.88040 1.23864 0.91099 0.93966 0.94576 1.67185 1.34495 0.97144 1.31975 1.18913 0.88964 0.92997 0.98019 1.21009 0.98111 0.91855 0.95662 0.89423 1.23733 0.98674 0.83726 0.96846 1.89071 1.90844 1.28584 1.21408 1.24407 0.97886 0.98872 0.85690 1.22701 0.98741 0.89377 0.92854 0.89267 1.58783 1.34529 1.36228 1.05953 1.25466 1.01235 1.03074 1.32032 1.84010 1.16255 0.95625 1.69967 0.89149 0.89210 0.91108 0.92903 0.89674 0.85976 0.83151 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.71 10.83 55.56 0.60 -18.11 15 2 C 0.06 1.39 5.48 -17.28 -0.09 1.29 15 3 Si 0.94 17.56 29.57 -169.99 -5.03 12.53 15 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 5 H -0.26 -4.79 7.11 56.52 0.40 -4.39 15 6 H -0.27 -4.95 7.11 56.52 0.40 -4.55 15 7 C -0.38 -9.87 9.44 -38.20 -0.36 -10.23 15 8 H 0.10 2.58 7.86 -52.49 -0.41 2.16 15 9 C 0.22 5.91 7.10 -16.91 -0.12 5.79 15 10 N -0.59 -15.64 10.68 -9.33 -0.10 -15.74 15 11 C 0.15 3.58 4.50 -84.37 -0.38 3.20 15 12 C -0.04 -0.86 3.58 -90.20 -0.32 -1.19 15 13 H 0.09 1.74 8.14 -51.93 -0.42 1.31 15 14 C 0.05 0.82 7.10 37.93 0.27 1.08 15 15 O -0.38 -6.41 11.65 -35.23 -0.41 -6.82 15 16 C 0.01 0.16 7.35 37.93 0.28 0.44 15 17 C 0.08 1.28 4.25 -66.15 -0.28 1.00 15 18 H 0.09 1.41 8.14 -51.93 -0.42 0.99 15 19 N -0.82 -14.38 8.36 -3.34 -0.03 -14.40 15 20 C -0.47 -10.93 8.45 29.53 0.25 -10.68 15 21 S 0.08 2.07 20.34 -107.50 -2.19 -0.12 15 22 H 0.30 6.38 8.29 -40.82 -0.34 6.04 15 23 H 0.09 1.43 8.14 -51.93 -0.42 1.01 15 24 H 0.07 1.26 5.68 -51.93 -0.30 0.97 15 25 H 0.05 0.76 8.00 -51.93 -0.42 0.34 15 26 H 0.09 1.05 8.14 -51.93 -0.42 0.62 15 27 H 0.33 4.64 9.08 -39.29 -0.36 4.29 15 28 H 0.35 6.57 6.75 -39.29 -0.27 6.30 15 29 H 0.12 2.63 6.57 -52.49 -0.35 2.29 15 LS Contribution 254.79 15.07 3.84 3.84 Total: -1.00 -28.22 254.79 -6.99 -35.21 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -2.91 Total: 12.91 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -0.76 Total: -9.30 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.47 Total: -48.25 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.41 Total: -6.82 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.19 Total: -0.12 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.22 -6.99 -35.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165371745.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.916 kcal (2) G-P(sol) polarization free energy of solvation -28.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds