Wall clock time and date at job start Mon Mar 30 2020 03:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30709 * 1 3 3 Si 1.86798 * 119.99582 * 2 1 4 4 H 1.48497 * 109.46905 * 264.98537 * 3 2 1 5 5 H 1.48501 * 109.46749 * 144.99156 * 3 2 1 6 6 H 1.48496 * 109.47434 * 24.99200 * 3 2 1 7 7 C 1.40242 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00148 * 187.87297 * 7 2 1 9 9 C 1.39913 * 120.00079 * 7.86707 * 7 2 1 10 10 N 1.31862 * 125.55564 * 187.57824 * 9 7 2 11 11 C 1.30455 * 115.68900 * 179.82183 * 10 9 7 12 12 C 1.50707 * 122.10376 * 180.22878 * 11 10 9 13 13 H 1.09000 * 110.45890 * 25.96628 * 12 11 10 14 14 C 1.54472 * 110.51526 * 148.57803 * 12 11 10 15 15 O 1.44646 * 104.69511 * 142.52170 * 14 12 11 16 16 C 1.44416 * 105.36961 * 319.65326 * 15 14 12 17 17 C 1.54478 * 104.80579 * 40.43469 * 16 15 14 18 18 H 1.09003 * 110.51143 * 94.66151 * 17 16 15 19 19 N 1.46895 * 110.63079 * 217.31754 * 17 16 15 20 20 C 1.34855 * 115.79642 * 0.48022 * 11 10 9 21 21 S 1.71040 * 109.23329 * 359.74544 * 20 11 10 22 22 H 0.96995 * 119.99713 * 359.97438 * 1 2 3 23 23 H 1.08997 * 110.37164 * 261.45352 * 14 12 11 24 24 H 1.09003 * 110.37417 * 23.78944 * 14 12 11 25 25 H 1.09003 * 110.37513 * 281.60395 * 16 15 14 26 26 H 1.09001 * 110.46550 * 159.31509 * 16 15 14 27 27 H 1.00898 * 111.00509 * 294.71018 * 19 17 16 28 28 H 1.00903 * 111.00041 * 58.66153 * 19 17 16 29 29 H 1.07999 * 125.38198 * 179.70592 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.5944 1.9853 -1.3947 5 1 3.4816 1.4731 0.8032 6 1 1.3895 2.6809 0.5915 7 6 2.0083 -1.2145 0.0005 8 1 3.0806 -1.2189 0.1287 9 6 1.3186 -2.4206 -0.1648 10 7 1.8405 -3.6253 -0.0422 11 6 1.0186 -4.6199 -0.2349 12 6 1.4604 -6.0567 -0.1259 13 1 2.3204 -6.1414 0.5385 14 6 0.2993 -6.9435 0.3757 15 8 0.4397 -8.1817 -0.3586 16 6 0.7979 -7.7916 -1.7021 17 6 1.7967 -6.6270 -1.5219 18 1 2.8221 -6.9959 -1.5469 19 7 1.5932 -5.6056 -2.5579 20 6 -0.2499 -4.2817 -0.5430 21 16 -0.3859 -2.5771 -0.5781 22 1 -0.4849 0.8400 0.0004 23 1 0.3935 -7.1219 1.4469 24 1 -0.6595 -6.4763 0.1509 25 1 -0.0838 -7.4543 -2.2471 26 1 1.2727 -8.6211 -2.2261 27 1 1.8108 -5.9704 -3.4731 28 1 0.6523 -5.2425 -2.5278 29 1 -1.0529 -4.9772 -0.7375 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165371745.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:45 Heat of formation + Delta-G solvation = -41.521434 kcal Electronic energy + Delta-G solvation = -15109.636835 eV Core-core repulsion = 12543.701754 eV Total energy + Delta-G solvation = -2565.935081 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.10052 -38.94419 -36.02364 -35.12487 -32.38540 -29.97373 -28.62370 -27.89266 -25.15824 -23.32578 -21.93336 -19.64899 -19.33354 -18.21908 -17.45273 -16.86689 -16.75530 -16.29234 -15.83556 -15.20288 -14.79855 -14.32295 -14.26649 -13.83456 -13.58631 -13.26702 -12.93128 -12.67756 -12.43176 -12.20880 -12.03694 -11.94722 -11.33175 -11.09311 -10.84590 -9.76179 -9.62943 -9.51465 -9.03439 -8.79836 -6.60868 0.71345 1.41270 1.52231 1.57777 1.64405 2.10173 2.23676 2.37327 2.90750 3.20893 3.68299 3.73739 3.77461 3.98593 4.16856 4.23951 4.51867 4.69611 4.72071 4.84163 4.94792 4.95660 5.01392 5.38377 5.69279 5.81864 6.00545 6.24813 6.46794 6.56231 6.64638 7.95242 8.07467 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.052015 B = 0.006679 C = 0.006441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.181056 B = 4191.420886 C = 4346.049788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.025 3.975 3 Si 1.013 2.987 4 H -0.257 1.257 5 H -0.257 1.257 6 H -0.258 1.258 7 C -0.410 4.410 8 H 0.096 0.904 9 C 0.186 3.814 10 N -0.619 5.619 11 C 0.151 3.849 12 C -0.052 4.052 13 H 0.077 0.923 14 C 0.056 3.944 15 O -0.386 6.386 16 C 0.017 3.983 17 C 0.080 3.920 18 H 0.098 0.902 19 N -0.840 5.840 20 C -0.471 4.471 21 S 0.065 5.935 22 H 0.308 0.692 23 H 0.101 0.899 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.116 0.884 27 H 0.346 0.654 28 H 0.344 0.656 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.247 -4.875 -3.168 5.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.196 4.196 3 Si 0.831 3.169 4 H -0.182 1.182 5 H -0.181 1.181 6 H -0.182 1.182 7 C -0.452 4.452 8 H 0.114 0.886 9 C -0.066 4.066 10 N -0.342 5.342 11 C 0.010 3.990 12 C -0.074 4.074 13 H 0.096 0.904 14 C -0.021 4.021 15 O -0.304 6.304 16 C -0.062 4.062 17 C -0.033 4.033 18 H 0.116 0.884 19 N -0.373 5.373 20 C -0.614 4.614 21 S 0.323 5.677 22 H 0.121 0.879 23 H 0.119 0.881 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.134 0.866 27 H 0.161 0.839 28 H 0.159 0.841 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.258 -3.904 -2.789 4.805 hybrid contribution -0.294 -0.789 -0.302 0.894 sum -0.552 -4.693 -3.091 5.647 Atomic orbital electron populations 1.69040 1.08982 1.32486 1.32038 1.27117 0.95882 1.05326 0.91227 0.84719 0.78553 0.73557 0.80059 1.18165 1.18050 1.18209 1.19279 0.96425 0.88854 1.40681 0.88558 1.24286 0.92210 0.94696 0.95422 1.67245 1.35769 0.97765 1.33393 1.19347 0.88735 0.94156 0.96727 1.21132 0.98621 0.90047 0.97627 0.90407 1.23607 0.97325 0.83567 0.97601 1.89074 1.90861 1.28083 1.22354 1.24467 0.97656 0.99051 0.84984 1.22694 0.99909 0.89692 0.90996 0.88353 1.58727 1.34024 1.37168 1.07367 1.25552 1.01725 1.02124 1.31974 1.83847 1.15634 0.97552 1.70710 0.87875 0.88075 0.91654 0.92364 0.86572 0.83949 0.84071 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.19 10.83 21.88 0.24 -37.95 15 2 C 0.03 1.18 5.48 85.35 0.47 1.64 15 3 Si 1.01 35.05 29.57 68.60 2.03 37.08 15 4 H -0.26 -8.63 7.11 99.48 0.71 -7.92 15 5 H -0.26 -8.78 7.11 99.48 0.71 -8.08 15 6 H -0.26 -8.23 7.11 99.48 0.71 -7.52 15 7 C -0.41 -21.74 9.44 23.16 0.22 -21.53 15 8 H 0.10 5.02 7.86 -2.91 -0.02 5.00 15 9 C 0.19 10.32 7.10 85.09 0.60 10.92 15 10 N -0.62 -33.67 10.68 -183.43 -1.96 -35.63 15 11 C 0.15 7.09 4.50 41.99 0.19 7.28 15 12 C -0.05 -2.00 3.58 -10.52 -0.04 -2.04 15 13 H 0.08 3.08 8.14 -2.39 -0.02 3.06 15 14 C 0.06 1.86 7.10 72.48 0.51 2.37 15 15 O -0.39 -12.02 11.65 -148.98 -1.74 -13.76 15 16 C 0.02 0.46 7.35 72.48 0.53 0.99 15 17 C 0.08 2.55 4.25 45.93 0.20 2.75 15 18 H 0.10 2.93 8.14 -2.39 -0.02 2.91 15 19 N -0.84 -28.47 8.36 -164.48 -1.37 -29.85 15 20 C -0.47 -21.69 8.45 67.04 0.57 -21.13 15 21 S 0.06 3.27 20.34 -56.49 -1.15 2.13 15 22 H 0.31 13.00 8.29 -92.71 -0.77 12.24 15 23 H 0.10 3.08 8.14 -2.39 -0.02 3.07 15 24 H 0.07 2.24 5.68 -2.39 -0.01 2.23 15 25 H 0.06 1.51 8.00 -2.39 -0.02 1.49 15 26 H 0.12 2.40 8.14 -2.39 -0.02 2.38 15 27 H 0.35 9.27 9.08 -89.70 -0.81 8.45 15 28 H 0.34 12.60 6.75 -89.69 -0.61 12.00 15 29 H 0.14 5.92 6.57 -2.91 -0.02 5.90 15 Total: -1.00 -60.59 254.79 -0.92 -61.51 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: -0.22 Total: 35.20 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 3.25 Total: -18.73 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -3.10 Total: -103.42 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -1.74 Total: -13.76 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 2.03 Total: 37.08 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.15 Total: 2.13 kcal Total: -60.59 -0.92 -61.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165371745.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.987 kcal (2) G-P(sol) polarization free energy of solvation -60.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds