Wall clock time and date at job start Mon Mar 30 2020 03:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86809 * 119.99360 * 2 1 4 4 H 1.48501 * 109.46995 * 270.00103 * 3 2 1 5 5 H 1.48497 * 109.47279 * 30.00144 * 3 2 1 6 6 H 1.48500 * 109.46674 * 150.00213 * 3 2 1 7 7 C 1.40243 * 120.00687 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00481 * 180.02562 * 7 2 1 9 9 C 1.39907 * 119.99595 * 359.97438 * 7 2 1 10 10 N 1.31869 * 125.55399 * 180.27350 * 9 7 2 11 11 C 1.30455 * 115.69463 * 180.18304 * 10 9 7 12 12 C 1.50698 * 122.10658 * 179.80962 * 11 10 9 13 13 H 1.08999 * 109.53813 * 64.82047 * 12 11 10 14 14 C 1.53096 * 109.50702 * 304.70737 * 12 11 10 15 15 O 1.43014 * 109.25720 * 183.21613 * 14 12 11 16 16 C 1.43014 * 113.73678 * 58.67430 * 15 14 12 17 17 C 1.53100 * 109.26048 * 301.32483 * 16 15 14 18 18 N 1.47016 * 109.50188 * 184.92606 * 12 11 10 19 19 C 1.34863 * 115.78591 * 359.53539 * 11 10 9 20 20 S 1.71033 * 109.23838 * 0.25201 * 19 11 10 21 21 H 0.96993 * 120.00787 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.50680 * 303.15261 * 14 12 11 23 23 H 1.09001 * 109.50581 * 63.28161 * 14 12 11 24 24 H 1.09000 * 109.50924 * 61.26568 * 16 15 14 25 25 H 1.09001 * 109.50777 * 181.34887 * 16 15 14 26 26 H 1.08993 * 109.50999 * 176.78052 * 17 16 15 27 27 H 1.09000 * 109.50792 * 296.92188 * 17 16 15 28 28 H 1.00894 * 111.00607 * 302.32231 * 18 12 11 29 29 H 1.08010 * 125.37606 * 180.27523 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6179 0.0000 4 1 2.4882 2.0466 -1.4001 5 1 1.4382 2.6528 0.7000 6 1 3.5384 1.4404 0.7000 7 6 2.0083 -1.2145 -0.0005 8 1 3.0883 -1.2144 -0.0001 9 6 1.3088 -2.4261 -0.0005 10 7 1.8546 -3.6266 0.0041 11 6 1.0186 -4.6280 -0.0006 12 6 1.4852 -6.0609 -0.0006 13 1 2.0098 -6.2734 0.9310 14 6 2.4296 -6.2911 -1.1833 15 8 2.8098 -7.6692 -1.2221 16 6 1.7042 -8.5682 -1.3441 17 6 0.7524 -8.3612 -0.1629 18 7 0.3248 -6.9550 -0.1255 19 6 -0.2896 -4.3002 0.0002 20 16 -0.4437 -2.5968 0.0005 21 1 -0.4851 0.8399 -0.0004 22 1 1.9220 -6.0272 -2.1111 23 1 3.3186 -5.6715 -1.0651 24 1 1.1756 -8.3706 -2.2766 25 1 2.0686 -9.5955 -1.3429 26 1 -0.1200 -9.0037 -0.2815 27 1 1.2653 -8.6104 0.7660 28 1 -0.3351 -6.7975 0.6213 29 1 -1.1102 -5.0024 0.0011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165378910.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:48 Heat of formation + Delta-G solvation = -20.971111 kcal Electronic energy + Delta-G solvation = -14883.401229 eV Core-core repulsion = 12318.357277 eV Total energy + Delta-G solvation = -2565.043952 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.25986 -37.38635 -34.52703 -33.88022 -31.19639 -28.68597 -26.61990 -26.00677 -23.74416 -22.07163 -20.23003 -18.23835 -17.61679 -16.51446 -15.82083 -15.59161 -15.17326 -14.57429 -14.21303 -13.94194 -13.69082 -13.29462 -12.55915 -12.17878 -12.11565 -11.77568 -11.42852 -11.25120 -10.97736 -10.57403 -10.40107 -10.33440 -9.70182 -9.60162 -9.19964 -8.19447 -7.85949 -7.75236 -7.10688 -7.07530 -4.73707 2.53432 2.93154 2.98611 3.03887 3.54459 3.68784 4.00419 4.08478 4.20798 4.37568 5.04598 5.13358 5.34097 5.39406 5.54421 5.69470 5.81281 5.90355 5.96906 6.29611 6.48948 6.71747 6.82047 7.03816 7.33609 7.53315 7.54917 7.62797 7.90521 8.32087 8.42779 9.73846 9.82616 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.051078 B = 0.006235 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.046443 B = 4489.582459 C = 4930.691925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.055 3.945 3 Si 0.941 3.059 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.376 4.376 8 H 0.103 0.897 9 C 0.207 3.793 10 N -0.601 5.601 11 C 0.108 3.892 12 C 0.136 3.864 13 H 0.046 0.954 14 C 0.082 3.918 15 O -0.392 6.392 16 C 0.062 3.938 17 C 0.021 3.979 18 N -0.678 5.678 19 C -0.442 4.442 20 S 0.100 5.900 21 H 0.298 0.702 22 H 0.055 0.945 23 H 0.106 0.894 24 H 0.055 0.945 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.034 0.966 28 H 0.347 0.653 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.235 -6.152 -0.396 6.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.167 4.167 3 Si 0.764 3.236 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.418 4.418 8 H 0.120 0.880 9 C -0.046 4.046 10 N -0.324 5.324 11 C -0.032 4.032 12 C 0.023 3.977 13 H 0.064 0.936 14 C 0.005 3.995 15 O -0.311 6.311 16 C -0.015 4.015 17 C -0.108 4.108 18 N -0.311 5.311 19 C -0.586 4.586 20 S 0.358 5.642 21 H 0.111 0.889 22 H 0.074 0.926 23 H 0.124 0.876 24 H 0.074 0.926 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.053 0.947 28 H 0.166 0.834 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.614 -5.362 -1.057 5.500 hybrid contribution 0.287 -0.379 0.969 1.079 sum -0.327 -5.742 -0.089 5.752 Atomic orbital electron populations 1.68817 1.07708 1.30809 1.33518 1.26171 0.95094 1.02612 0.92821 0.85729 0.80019 0.78231 0.79612 1.18934 1.19779 1.18073 1.18974 0.95724 0.87391 1.39753 0.87962 1.23872 0.91284 0.93903 0.95534 1.67119 1.34970 0.97146 1.33161 1.19212 0.89312 0.93054 1.01666 1.20300 0.90191 0.89441 0.97735 0.93599 1.22631 0.98959 0.80881 0.97002 1.87952 1.31646 1.16911 1.94549 1.22599 0.87968 0.93700 0.97250 1.22588 0.99107 0.90842 0.98307 1.60529 1.15127 1.02745 1.52743 1.25715 0.99648 1.03520 1.29716 1.84208 1.11657 0.94984 1.73317 0.88948 0.92636 0.87566 0.92632 0.89125 0.90086 0.94729 0.83440 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.67 10.67 55.56 0.59 -18.08 15 2 C 0.06 1.30 5.50 -17.28 -0.10 1.20 15 3 Si 0.94 17.41 29.56 -169.99 -5.03 12.38 15 4 H -0.26 -4.83 7.11 56.52 0.40 -4.43 15 5 H -0.27 -4.89 7.11 56.52 0.40 -4.48 15 6 H -0.26 -4.72 7.11 56.52 0.40 -4.32 15 7 C -0.38 -9.71 9.45 -38.20 -0.36 -10.07 15 8 H 0.10 2.55 7.85 -52.49 -0.41 2.14 15 9 C 0.21 5.65 7.14 -16.91 -0.12 5.53 15 10 N -0.60 -16.08 10.51 -9.33 -0.10 -16.17 15 11 C 0.11 2.62 6.04 -84.38 -0.51 2.11 15 12 C 0.14 2.76 3.14 -68.75 -0.22 2.55 15 13 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 14 C 0.08 1.61 6.16 37.21 0.23 1.83 15 15 O -0.39 -6.93 10.83 -35.23 -0.38 -7.31 15 16 C 0.06 0.88 7.01 37.21 0.26 1.14 15 17 C 0.02 0.30 6.76 -3.70 -0.03 0.27 15 18 N -0.68 -11.74 5.84 -107.67 -0.63 -12.37 15 19 C -0.44 -10.68 10.06 29.53 0.30 -10.39 15 20 S 0.10 2.54 20.18 -107.50 -2.17 0.37 15 21 H 0.30 6.37 8.29 -40.82 -0.34 6.03 15 22 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 23 H 0.11 2.14 8.13 -51.93 -0.42 1.72 15 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 27 H 0.03 0.48 8.14 -51.93 -0.42 0.05 15 28 H 0.35 5.75 7.76 -39.30 -0.30 5.45 15 29 H 0.13 2.98 6.95 -52.48 -0.37 2.61 15 LS Contribution 258.01 15.07 3.89 3.89 Total: -1.00 -28.13 258.01 -7.54 -35.67 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -3.17 Total: 7.44 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -0.54 Total: -5.83 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.13 Total: -46.62 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.38 Total: -7.31 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -2.17 Total: 0.37 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.13 -7.54 -35.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165378910.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.698 kcal (2) G-P(sol) polarization free energy of solvation -28.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds