Wall clock time and date at job start Mon Mar 30 2020 03:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86809 * 119.99360 * 2 1 4 4 H 1.48501 * 109.46995 * 270.00103 * 3 2 1 5 5 H 1.48497 * 109.47279 * 30.00144 * 3 2 1 6 6 H 1.48500 * 109.46674 * 150.00213 * 3 2 1 7 7 C 1.40243 * 120.00687 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00481 * 180.02562 * 7 2 1 9 9 C 1.39907 * 119.99595 * 359.97438 * 7 2 1 10 10 N 1.31869 * 125.55399 * 180.27350 * 9 7 2 11 11 C 1.30455 * 115.69463 * 180.18304 * 10 9 7 12 12 C 1.50698 * 122.10658 * 179.80962 * 11 10 9 13 13 H 1.08999 * 109.53813 * 64.82047 * 12 11 10 14 14 C 1.53096 * 109.50702 * 304.70737 * 12 11 10 15 15 O 1.43014 * 109.25720 * 183.21613 * 14 12 11 16 16 C 1.43014 * 113.73678 * 58.67430 * 15 14 12 17 17 C 1.53100 * 109.26048 * 301.32483 * 16 15 14 18 18 N 1.47016 * 109.50188 * 184.92606 * 12 11 10 19 19 C 1.34863 * 115.78591 * 359.53539 * 11 10 9 20 20 S 1.71033 * 109.23838 * 0.25201 * 19 11 10 21 21 H 0.96993 * 120.00787 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.50680 * 303.15261 * 14 12 11 23 23 H 1.09001 * 109.50581 * 63.28161 * 14 12 11 24 24 H 1.09000 * 109.50924 * 61.26568 * 16 15 14 25 25 H 1.09001 * 109.50777 * 181.34887 * 16 15 14 26 26 H 1.08993 * 109.50999 * 176.78052 * 17 16 15 27 27 H 1.09000 * 109.50792 * 296.92188 * 17 16 15 28 28 H 1.00894 * 111.00607 * 302.32231 * 18 12 11 29 29 H 1.08010 * 125.37606 * 180.27523 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6179 0.0000 4 1 2.4882 2.0466 -1.4001 5 1 1.4382 2.6528 0.7000 6 1 3.5384 1.4404 0.7000 7 6 2.0083 -1.2145 -0.0005 8 1 3.0883 -1.2144 -0.0001 9 6 1.3088 -2.4261 -0.0005 10 7 1.8546 -3.6266 0.0041 11 6 1.0186 -4.6280 -0.0006 12 6 1.4852 -6.0609 -0.0006 13 1 2.0098 -6.2734 0.9310 14 6 2.4296 -6.2911 -1.1833 15 8 2.8098 -7.6692 -1.2221 16 6 1.7042 -8.5682 -1.3441 17 6 0.7524 -8.3612 -0.1629 18 7 0.3248 -6.9550 -0.1255 19 6 -0.2896 -4.3002 0.0002 20 16 -0.4437 -2.5968 0.0005 21 1 -0.4851 0.8399 -0.0004 22 1 1.9220 -6.0272 -2.1111 23 1 3.3186 -5.6715 -1.0651 24 1 1.1756 -8.3706 -2.2766 25 1 2.0686 -9.5955 -1.3429 26 1 -0.1200 -9.0037 -0.2815 27 1 1.2653 -8.6104 0.7660 28 1 -0.3351 -6.7975 0.6213 29 1 -1.1102 -5.0024 0.0011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165378910.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:47 Heat of formation + Delta-G solvation = -41.725754 kcal Electronic energy + Delta-G solvation = -14884.301218 eV Core-core repulsion = 12318.357277 eV Total energy + Delta-G solvation = -2565.943941 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.76256 -39.14164 -36.19935 -35.48143 -32.67547 -30.47395 -28.38733 -27.51918 -25.29592 -23.76498 -21.67088 -19.98639 -19.55618 -17.99139 -17.49600 -17.11399 -16.87636 -15.92020 -15.61977 -15.44985 -15.24901 -14.79864 -14.36113 -14.00388 -13.70569 -13.39555 -12.96251 -12.71479 -12.36331 -12.31356 -12.00710 -11.74362 -11.34696 -11.31841 -10.75420 -9.83357 -9.75746 -9.57079 -9.05617 -8.87731 -6.69501 0.66849 1.40859 1.50529 1.56730 1.58968 2.04748 2.20738 2.27161 2.84251 3.00716 3.15918 3.90217 3.95189 4.07696 4.14866 4.30609 4.40311 4.68455 4.71595 4.87431 4.90359 4.97664 5.02438 5.26565 5.69498 5.88117 5.97526 6.10653 6.26349 6.42067 6.49293 7.80964 8.03555 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.051078 B = 0.006235 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.046443 B = 4489.582459 C = 4930.691925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.021 3.979 3 Si 1.018 2.982 4 H -0.257 1.257 5 H -0.258 1.258 6 H -0.256 1.256 7 C -0.401 4.401 8 H 0.102 0.898 9 C 0.174 3.826 10 N -0.628 5.628 11 C 0.099 3.901 12 C 0.142 3.858 13 H 0.038 0.962 14 C 0.094 3.906 15 O -0.400 6.400 16 C 0.053 3.947 17 C 0.022 3.978 18 N -0.683 5.683 19 C -0.448 4.448 20 S 0.082 5.918 21 H 0.311 0.689 22 H 0.043 0.957 23 H 0.091 0.909 24 H 0.056 0.944 25 H 0.128 0.872 26 H 0.115 0.885 27 H 0.040 0.960 28 H 0.350 0.650 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 -6.280 -0.449 6.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.200 4.200 3 Si 0.836 3.164 4 H -0.181 1.181 5 H -0.182 1.182 6 H -0.179 1.179 7 C -0.444 4.444 8 H 0.120 0.880 9 C -0.078 4.078 10 N -0.352 5.352 11 C -0.041 4.041 12 C 0.030 3.970 13 H 0.056 0.944 14 C 0.017 3.983 15 O -0.319 6.319 16 C -0.023 4.023 17 C -0.107 4.107 18 N -0.317 5.317 19 C -0.592 4.592 20 S 0.340 5.660 21 H 0.124 0.876 22 H 0.061 0.939 23 H 0.109 0.891 24 H 0.074 0.926 25 H 0.146 0.854 26 H 0.133 0.867 27 H 0.058 0.942 28 H 0.169 0.831 29 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.710 -5.537 -1.110 5.692 hybrid contribution 0.262 -0.388 0.978 1.084 sum -0.448 -5.925 -0.131 5.943 Atomic orbital electron populations 1.68841 1.09073 1.32665 1.32008 1.27190 0.95912 1.05527 0.91336 0.84631 0.78550 0.73251 0.80005 1.18095 1.18165 1.17911 1.19352 0.96059 0.88329 1.40653 0.88045 1.24352 0.92278 0.94742 0.96436 1.67178 1.35909 0.97649 1.34484 1.19757 0.89337 0.94497 1.00478 1.20180 0.91334 0.87925 0.97597 0.94441 1.22311 0.97883 0.82165 0.95979 1.87939 1.33362 1.16054 1.94560 1.22962 0.87359 0.94622 0.97380 1.22753 1.00548 0.89023 0.98416 1.60518 1.13994 1.04251 1.52910 1.25854 1.00203 1.02990 1.30169 1.84014 1.11139 0.96482 1.74346 0.87558 0.93877 0.89114 0.92567 0.85399 0.86737 0.94215 0.83074 0.83095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.88 10.67 21.88 0.23 -37.65 15 2 C 0.02 0.96 5.50 85.35 0.47 1.43 15 3 Si 1.02 34.46 29.56 68.60 2.03 36.49 15 4 H -0.26 -8.37 7.11 99.48 0.71 -7.66 15 5 H -0.26 -8.07 7.11 99.48 0.71 -7.36 15 6 H -0.26 -8.55 7.11 99.48 0.71 -7.84 15 7 C -0.40 -21.08 9.45 23.16 0.22 -20.86 15 8 H 0.10 5.17 7.85 -2.91 -0.02 5.15 15 9 C 0.17 9.72 7.14 85.09 0.61 10.33 15 10 N -0.63 -34.59 10.51 -183.44 -1.93 -36.52 15 11 C 0.10 4.88 6.04 41.99 0.25 5.13 15 12 C 0.14 5.81 3.14 44.18 0.14 5.95 15 13 H 0.04 1.58 8.14 -2.39 -0.02 1.56 15 14 C 0.09 3.71 6.16 72.01 0.44 4.15 15 15 O -0.40 -13.67 10.83 -148.98 -1.61 -15.29 15 16 C 0.05 1.36 7.01 72.02 0.50 1.86 15 17 C 0.02 0.54 6.76 86.31 0.58 1.12 15 18 N -0.68 -22.72 5.84 -494.56 -2.89 -25.61 15 19 C -0.45 -21.90 10.06 67.04 0.67 -21.23 15 20 S 0.08 4.27 20.18 -56.49 -1.14 3.13 15 21 H 0.31 12.95 8.29 -92.71 -0.77 12.18 15 22 H 0.04 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.09 3.78 8.13 -2.39 -0.02 3.76 15 24 H 0.06 1.45 8.14 -2.39 -0.02 1.43 15 25 H 0.13 2.33 8.14 -2.39 -0.02 2.32 15 26 H 0.11 2.14 8.14 -2.39 -0.02 2.12 15 27 H 0.04 0.98 8.14 -2.39 -0.02 0.96 15 28 H 0.35 11.13 7.76 -89.70 -0.70 10.44 15 29 H 0.15 6.67 6.95 -2.91 -0.02 6.65 15 Total: -1.00 -61.17 258.01 -0.94 -62.11 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.48 Total: 25.45 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 3.89 Total: -12.12 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -4.58 Total: -99.78 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -1.61 Total: -15.29 kcal Atomic # 14 Polarization: 34.46 SS G_CDS: 2.03 Total: 36.49 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.14 Total: 3.13 kcal Total: -61.17 -0.94 -62.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165378910.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.381 kcal (2) G-P(sol) polarization free energy of solvation -61.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds