Wall clock time and date at job start Mon Mar 30 2020 03:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30693 * 1 3 3 Si 1.86799 * 120.00037 * 2 1 4 4 H 1.48507 * 109.47161 * 85.01340 * 3 2 1 5 5 H 1.48496 * 109.47565 * 205.01440 * 3 2 1 6 6 H 1.48498 * 109.47376 * 325.01696 * 3 2 1 7 7 C 1.40248 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00112 * 187.87114 * 7 2 1 9 9 C 1.39908 * 120.00145 * 7.87442 * 7 2 1 10 10 N 1.31861 * 125.55619 * 187.58463 * 9 7 2 11 11 C 1.30458 * 115.68974 * 179.77428 * 10 9 7 12 12 C 1.50694 * 122.10340 * 180.25937 * 11 10 9 13 13 H 1.08999 * 109.50728 * 185.18907 * 12 11 10 14 14 C 1.53092 * 109.50885 * 305.27853 * 12 11 10 15 15 O 1.43019 * 109.25985 * 176.78392 * 14 12 11 16 16 C 1.43023 * 113.73638 * 301.32952 * 15 14 12 17 17 C 1.53094 * 109.25688 * 58.66976 * 16 15 14 18 18 N 1.47018 * 109.26077 * 303.14951 * 17 16 15 19 19 C 1.34858 * 115.79268 * 0.52429 * 11 10 9 20 20 S 1.71045 * 109.23570 * 359.71640 * 19 11 10 21 21 H 0.97001 * 120.00155 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.50691 * 296.71715 * 14 12 11 23 23 H 1.09000 * 109.50803 * 56.80309 * 14 12 11 24 24 H 1.08994 * 109.50283 * 178.60680 * 16 15 14 25 25 H 1.08997 * 109.50783 * 298.69145 * 16 15 14 26 26 H 1.08997 * 109.50758 * 63.08750 * 17 16 15 27 27 H 1.09007 * 109.50376 * 183.17357 * 17 16 15 28 28 H 1.00899 * 110.99612 * 294.84324 * 18 17 16 29 29 H 1.08000 * 125.38428 * 179.73987 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.3831 2.1073 1.3948 5 1 3.5872 1.4121 -0.5920 6 1 1.4951 2.6200 -0.8027 7 6 2.0082 -1.2146 -0.0005 8 1 3.0805 -1.2190 0.1275 9 6 1.3186 -2.4204 -0.1671 10 7 1.8404 -3.6253 -0.0455 11 6 1.0184 -4.6197 -0.2383 12 6 1.4599 -6.0564 -0.1297 13 1 0.6388 -6.7124 -0.4187 14 6 2.6553 -6.2953 -1.0558 15 8 3.1170 -7.6391 -0.8930 16 6 3.5110 -7.9544 0.4452 17 6 2.3242 -7.7323 1.3865 18 7 1.8552 -6.3450 1.2566 19 6 -0.2501 -4.2812 -0.5465 20 16 -0.3859 -2.5764 -0.5806 21 1 -0.4850 0.8400 0.0004 22 1 2.3512 -6.1378 -2.0907 23 1 3.4566 -5.6012 -0.8023 24 1 3.8258 -8.9966 0.4959 25 1 4.3379 -7.3096 0.7427 26 1 1.5172 -8.4156 1.1223 27 1 2.6357 -7.9171 2.4147 28 1 2.5577 -5.6945 1.5752 29 1 -1.0534 -4.9764 -0.7406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165379032.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:51 Heat of formation + Delta-G solvation = -24.321447 kcal Electronic energy + Delta-G solvation = -14927.664265 eV Core-core repulsion = 12362.475031 eV Total energy + Delta-G solvation = -2565.189233 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.40583 -37.42251 -34.38815 -33.81384 -31.27383 -28.84119 -26.49567 -25.69428 -23.86750 -21.93591 -20.89342 -18.31302 -17.68803 -16.13552 -15.74487 -15.40628 -15.17799 -14.89901 -14.57232 -14.25403 -13.45028 -12.54502 -12.34330 -12.29410 -12.06139 -11.81157 -11.44914 -11.23903 -11.06303 -10.82867 -10.55212 -10.42619 -9.85159 -9.71090 -9.39442 -7.97681 -7.85413 -7.75805 -7.23374 -7.02857 -4.73804 2.48082 2.92155 2.96523 3.01483 3.50021 3.67284 3.93780 3.98164 4.13811 4.69683 5.00539 5.19564 5.28817 5.36702 5.59783 5.65073 5.72469 5.78625 6.00630 6.12967 6.27053 6.72395 6.79963 7.23965 7.31162 7.36234 7.56759 7.75564 7.87684 8.29783 8.40562 9.70088 9.80246 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.040548 B = 0.006540 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.378684 B = 4280.365262 C = 4644.178685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.059 3.941 3 Si 0.938 3.062 4 H -0.266 1.266 5 H -0.256 1.256 6 H -0.272 1.272 7 C -0.379 4.379 8 H 0.102 0.898 9 C 0.213 3.787 10 N -0.598 5.598 11 C 0.115 3.885 12 C 0.139 3.861 13 H 0.084 0.916 14 C 0.036 3.964 15 O -0.389 6.389 16 C 0.021 3.979 17 C 0.022 3.978 18 N -0.673 5.673 19 C -0.442 4.442 20 S 0.092 5.908 21 H 0.297 0.703 22 H 0.094 0.906 23 H 0.064 0.936 24 H 0.091 0.909 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.350 0.650 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.042 -4.890 0.550 5.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.164 4.164 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.180 1.180 6 H -0.197 1.197 7 C -0.422 4.422 8 H 0.120 0.880 9 C -0.040 4.040 10 N -0.321 5.321 11 C -0.025 4.025 12 C 0.026 3.974 13 H 0.102 0.898 14 C -0.043 4.043 15 O -0.307 6.307 16 C -0.058 4.058 17 C -0.109 4.109 18 N -0.303 5.303 19 C -0.587 4.587 20 S 0.351 5.649 21 H 0.110 0.890 22 H 0.112 0.888 23 H 0.082 0.918 24 H 0.109 0.891 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.169 0.831 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.869 -4.369 0.531 4.781 hybrid contribution 1.241 -0.081 -0.104 1.248 sum 3.110 -4.450 0.426 5.446 Atomic orbital electron populations 1.68993 1.07719 1.30839 1.32890 1.26176 0.95090 1.02581 0.92575 0.85769 0.80235 0.78470 0.79421 1.19051 1.17992 1.19654 1.18939 0.96259 0.87631 1.39386 0.87999 1.23847 0.91233 0.93919 0.95030 1.67157 1.34861 0.97263 1.32838 1.19200 0.89736 0.93245 1.00314 1.20540 0.96265 0.93073 0.87504 0.89779 1.23270 0.97121 0.82609 1.01262 1.87991 1.84666 1.30645 1.27448 1.23253 0.96949 1.01240 0.84353 1.22659 0.96763 0.92058 0.99383 1.60869 1.45464 1.02813 1.21200 1.25647 1.01047 1.03361 1.28665 1.84059 1.15991 0.95401 1.69437 0.89039 0.88773 0.91777 0.89053 0.93348 0.90412 0.90085 0.83091 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.54 10.83 55.56 0.60 -17.93 15 2 C 0.06 1.37 5.48 -17.28 -0.09 1.27 15 3 Si 0.94 17.23 29.57 -169.99 -5.03 12.20 15 4 H -0.27 -4.81 7.11 56.52 0.40 -4.41 15 5 H -0.26 -4.67 7.11 56.52 0.40 -4.27 15 6 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 7 C -0.38 -9.66 9.44 -38.20 -0.36 -10.02 15 8 H 0.10 2.50 7.86 -52.49 -0.41 2.09 15 9 C 0.21 5.70 7.10 -16.91 -0.12 5.58 15 10 N -0.60 -15.50 10.33 -9.33 -0.10 -15.60 15 11 C 0.12 2.77 5.56 -84.38 -0.47 2.30 15 12 C 0.14 2.77 3.02 -68.76 -0.21 2.56 15 13 H 0.08 1.66 8.01 -51.93 -0.42 1.24 15 14 C 0.04 0.67 6.20 37.21 0.23 0.90 15 15 O -0.39 -6.70 10.83 -35.23 -0.38 -7.08 15 16 C 0.02 0.29 7.01 37.21 0.26 0.55 15 17 C 0.02 0.31 6.76 -3.71 -0.03 0.28 15 18 N -0.67 -12.39 6.57 -107.68 -0.71 -13.10 15 19 C -0.44 -10.83 10.78 29.53 0.32 -10.51 15 20 S 0.09 2.34 20.34 -107.50 -2.19 0.16 15 21 H 0.30 6.33 8.29 -40.82 -0.34 5.99 15 22 H 0.09 1.73 8.14 -51.93 -0.42 1.31 15 23 H 0.06 1.27 7.96 -51.93 -0.41 0.86 15 24 H 0.09 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 26 H 0.08 1.10 8.14 -51.93 -0.42 0.67 15 27 H 0.08 0.97 8.14 -51.92 -0.42 0.55 15 28 H 0.35 6.72 8.75 -39.29 -0.34 6.38 15 29 H 0.13 2.91 8.06 -52.49 -0.42 2.49 15 LS Contribution 260.80 15.07 3.93 3.93 Total: -1.00 -27.62 260.80 -7.59 -35.21 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -3.26 Total: 9.30 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -0.47 Total: -7.08 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -0.20 Total: -46.64 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.38 Total: -7.08 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.19 Total: 0.16 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.62 -7.59 -35.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165379032.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.887 kcal (2) G-P(sol) polarization free energy of solvation -27.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds