Wall clock time and date at job start Mon Mar 30 2020 03:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30699 * 1 3 3 Si 1.86790 * 120.00013 * 2 1 4 4 H 1.48504 * 109.47104 * 240.00556 * 3 2 1 5 5 H 1.48504 * 109.47174 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47319 * 120.00492 * 3 2 1 7 7 C 1.40254 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99387 * 179.97438 * 7 2 1 9 9 C 1.39906 * 120.00441 * 359.97438 * 7 2 1 10 10 N 1.31861 * 125.55732 * 180.02562 * 9 7 2 11 11 C 1.30452 * 115.68931 * 179.97438 * 10 9 7 12 12 C 1.50707 * 122.10170 * 180.02562 * 11 10 9 13 13 N 1.46897 * 110.45562 * 127.57979 * 12 11 10 14 14 C 1.54508 * 110.50816 * 4.97882 * 12 11 10 15 15 C 1.54482 * 104.06544 * 241.35300 * 14 12 11 16 16 O 1.44426 * 104.79756 * 23.98013 * 15 14 12 17 17 C 1.44430 * 105.27765 * 319.48755 * 16 15 14 18 18 C 1.34851 * 115.79932 * 0.02562 * 11 10 9 19 19 S 1.71038 * 109.23175 * 359.97438 * 18 11 10 20 20 H 0.96996 * 120.00103 * 359.97438 * 1 2 3 21 21 H 1.00902 * 110.99656 * 59.30656 * 13 12 11 22 22 H 1.00905 * 111.00042 * 183.25123 * 13 12 11 23 23 H 1.08995 * 110.51707 * 0.02562 * 14 12 11 24 24 H 1.09010 * 110.50984 * 122.71064 * 14 12 11 25 25 H 1.08998 * 110.37545 * 142.81118 * 15 14 12 26 26 H 1.09004 * 110.37060 * 265.15568 * 15 14 12 27 27 H 1.08994 * 110.37314 * 281.68240 * 17 16 15 28 28 H 1.08995 * 110.36982 * 159.34075 * 17 16 15 29 29 H 1.07999 * 125.38412 * 180.02562 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 3.0946 1.6964 -1.2126 5 1 1.2759 2.7464 0.0006 6 1 3.0948 1.6963 1.2125 7 6 2.0082 -1.2147 -0.0005 8 1 3.0882 -1.2146 -0.0010 9 6 1.3087 -2.4263 -0.0005 10 7 1.8543 -3.6267 -0.0005 11 6 1.0181 -4.6280 0.0000 12 6 1.4846 -6.0610 0.0006 13 7 0.8454 -6.8085 1.0918 14 6 3.0231 -6.1294 0.1262 15 6 3.4752 -6.8288 -1.1750 16 8 2.4104 -6.5777 -2.1179 17 6 1.1891 -6.7271 -1.3615 18 6 -0.2899 -4.3002 -0.0001 19 16 -0.4439 -2.5968 -0.0002 20 1 -0.4850 0.8400 0.0004 21 1 -0.1593 -6.7947 0.9994 22 1 1.1917 -7.7554 1.1328 23 1 3.4462 -5.1269 0.1882 24 1 3.3094 -6.7200 0.9965 25 1 4.4093 -6.3963 -1.5334 26 1 3.5907 -7.9000 -1.0096 27 1 0.9542 -7.7826 -1.2247 28 1 0.3672 -6.2164 -1.8632 29 1 -1.1106 -5.0023 0.0007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165380922.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:27 Heat of formation + Delta-G solvation = -20.499674 kcal Electronic energy + Delta-G solvation = -15150.505066 eV Core-core repulsion = 12585.481557 eV Total energy + Delta-G solvation = -2565.023509 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.56515 -37.14619 -34.38937 -33.56747 -29.86649 -29.15430 -27.12136 -26.19690 -23.48896 -21.71569 -20.55144 -17.95285 -17.58263 -16.28557 -15.87803 -15.22698 -15.14625 -14.65781 -14.51894 -13.88789 -13.03957 -12.76525 -12.27925 -12.16430 -11.89058 -11.68359 -11.33867 -11.18878 -10.92358 -10.66751 -10.55245 -10.34257 -9.65623 -9.44897 -9.32068 -8.35297 -7.83940 -7.68916 -7.09349 -7.06303 -4.71828 2.54566 2.93937 2.98208 3.05196 3.56315 3.70003 4.01738 4.05276 4.40585 4.95044 5.00553 5.19981 5.37066 5.43458 5.44829 5.72055 5.97925 6.09094 6.16137 6.23142 6.66722 6.83238 6.91293 7.13782 7.18729 7.52771 7.59730 7.78835 7.91068 8.33146 8.45411 9.77185 9.85030 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.036886 B = 0.007536 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.920611 B = 3714.407448 C = 4134.380337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.055 3.945 3 Si 0.942 3.058 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.374 4.374 8 H 0.102 0.898 9 C 0.207 3.793 10 N -0.590 5.590 11 C 0.138 3.862 12 C 0.165 3.835 13 N -0.824 5.824 14 C -0.144 4.144 15 C 0.045 3.955 16 O -0.370 6.370 17 C 0.025 3.975 18 C -0.461 4.461 19 S 0.104 5.896 20 H 0.298 0.702 21 H 0.342 0.658 22 H 0.333 0.667 23 H 0.111 0.889 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.317 -5.632 -0.142 5.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.167 4.167 3 Si 0.765 3.235 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.417 4.417 8 H 0.120 0.880 9 C -0.045 4.045 10 N -0.312 5.312 11 C -0.003 4.003 12 C 0.070 3.930 13 N -0.355 5.355 14 C -0.182 4.182 15 C -0.032 4.032 16 O -0.288 6.288 17 C -0.055 4.055 18 C -0.606 4.606 19 S 0.362 5.638 20 H 0.111 0.889 21 H 0.155 0.845 22 H 0.146 0.854 23 H 0.130 0.870 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.135 -4.228 0.114 4.379 hybrid contribution -0.043 -1.088 -0.509 1.202 sum 1.092 -5.316 -0.395 5.441 Atomic orbital electron populations 1.68807 1.07719 1.30904 1.33446 1.26174 0.95097 1.02615 0.92825 0.85768 0.79540 0.77836 0.80367 1.18444 1.19909 1.18452 1.18944 0.95696 0.87417 1.39609 0.88006 1.23863 0.91262 0.93982 0.95426 1.67005 1.34756 0.97017 1.32458 1.18859 0.88707 0.92802 0.99979 1.20403 0.94055 0.90849 0.87709 1.58758 1.10650 1.18166 1.47902 1.23032 0.94243 1.04271 0.96636 1.23418 0.91975 0.98123 0.89710 1.89111 1.14971 1.91773 1.32922 1.24324 0.89152 0.98236 0.93829 1.25568 0.99226 1.04017 1.31750 1.84156 1.11709 0.94561 1.73333 0.88894 0.84452 0.85420 0.87029 0.91005 0.89364 0.93412 0.93332 0.89015 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.84 10.67 55.56 0.59 -18.25 15 2 C 0.06 1.31 5.50 -17.28 -0.10 1.21 15 3 Si 0.94 17.58 29.56 -169.99 -5.03 12.55 15 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 15 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 15 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 7 C -0.37 -9.76 9.45 -38.20 -0.36 -10.12 15 8 H 0.10 2.55 7.85 -52.49 -0.41 2.14 15 9 C 0.21 5.71 7.14 -16.92 -0.12 5.59 15 10 N -0.59 -15.89 8.90 -9.33 -0.08 -15.98 15 11 C 0.14 3.36 5.57 -84.38 -0.47 2.89 15 12 C 0.17 3.22 1.11 -131.19 -0.15 3.07 15 13 N -0.82 -13.67 8.83 1.08 0.01 -13.67 15 14 C -0.14 -2.64 6.41 -25.16 -0.16 -2.80 15 15 C 0.04 0.73 7.63 37.94 0.29 1.02 15 16 O -0.37 -7.22 11.65 -35.23 -0.41 -7.63 15 17 C 0.02 0.44 6.86 37.93 0.26 0.70 15 18 C -0.46 -11.17 10.01 29.53 0.30 -10.88 15 19 S 0.10 2.67 20.19 -107.50 -2.17 0.50 15 20 H 0.30 6.45 8.29 -40.82 -0.34 6.12 15 21 H 0.34 5.39 8.26 -39.29 -0.32 5.06 15 22 H 0.33 4.44 8.93 -39.29 -0.35 4.09 15 23 H 0.11 2.41 6.47 -51.93 -0.34 2.07 15 24 H 0.07 1.17 7.95 -51.92 -0.41 0.76 15 25 H 0.09 1.34 8.14 -51.93 -0.42 0.91 15 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 27 H 0.05 0.72 8.03 -51.93 -0.42 0.30 15 28 H 0.09 1.76 7.62 -51.93 -0.40 1.36 15 29 H 0.12 2.70 7.72 -52.49 -0.40 2.29 15 LS Contribution 258.21 15.07 3.89 3.89 Total: -1.00 -29.17 258.21 -6.74 -35.90 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -3.03 Total: 12.00 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -0.51 Total: -9.31 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.52 Total: -47.89 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.41 Total: -7.63 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -2.17 Total: 0.50 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.17 -6.74 -35.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165380922.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.405 kcal (2) G-P(sol) polarization free energy of solvation -29.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds