Wall clock time and date at job start Mon Mar 30 2020 04:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34450 * 126.44967 * 2 1 4 4 N 1.30878 * 109.42026 * 180.27790 * 3 2 1 5 5 C 1.33250 * 109.77665 * 359.72884 * 4 3 2 6 6 N 1.48008 * 126.20960 * 179.97438 * 5 4 3 7 7 O 1.31703 * 119.99992 * 180.02562 * 6 5 4 8 8 O 1.31701 * 119.99944 * 0.02562 * 6 5 4 9 9 C 1.37882 * 107.57986 * 359.97438 * 5 4 3 10 10 C 1.46518 * 126.94167 * 179.97438 * 9 5 4 11 11 O 1.21618 * 120.00250 * 279.53780 * 10 9 5 12 12 N 1.34780 * 119.99774 * 99.52913 * 10 9 5 13 13 C 1.33238 * 120.00235 * 174.84009 * 12 10 9 14 14 H 1.07999 * 119.99764 * 359.97438 * 13 12 10 15 15 C 1.46796 * 120.00360 * 179.72848 * 13 12 10 16 16 N 1.29308 * 120.00071 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99710 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46946 * 90.00160 * 17 15 13 19 19 H 1.48500 * 109.46989 * 210.00050 * 17 15 13 20 20 H 1.48496 * 109.46988 * 330.00187 * 17 15 13 21 21 H 1.08999 * 109.47016 * 275.14021 * 1 2 3 22 22 H 1.08999 * 109.47325 * 35.13844 * 1 2 3 23 23 H 1.08996 * 109.47222 * 155.13549 * 1 2 3 24 24 H 1.08002 * 125.28563 * 0.02562 * 3 2 1 25 25 H 0.97004 * 120.00070 * 354.84168 * 12 10 9 26 26 H 0.96997 * 119.99772 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2638 1.0815 0.0000 4 7 3.5152 0.6982 -0.0060 5 6 3.5791 -0.6328 -0.0041 6 7 4.8138 -1.4489 -0.0099 7 8 4.7343 -2.7635 -0.0077 8 8 5.9920 -0.8604 -0.0171 9 6 2.2861 -1.1117 0.0041 10 6 1.8672 -2.5158 0.0083 11 8 1.8545 -3.1497 -1.0295 12 7 1.4962 -3.1048 1.1624 13 6 1.0178 -4.3483 1.1520 14 1 0.9271 -4.8841 0.2187 15 6 0.6193 -4.9920 2.4096 16 7 0.1546 -6.1987 2.3994 17 14 0.7834 -4.0680 4.0247 18 1 -0.4712 -3.3219 4.2979 19 1 1.0344 -5.0339 5.1244 20 1 1.9175 -3.1135 3.9358 21 1 -0.3633 0.0921 1.0235 22 1 -0.3634 0.8404 -0.5915 23 1 -0.3633 -0.9324 -0.4321 24 1 1.9253 2.1071 0.0004 25 1 1.5773 -2.6234 2.0006 26 1 -0.1084 -6.6241 3.2305 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216485389.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:58 Heat of formation + Delta-G solvation = 71.807513 kcal Electronic energy + Delta-G solvation = -17039.926611 eV Core-core repulsion = 13932.612628 eV Total energy + Delta-G solvation = -3107.313983 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.069 amu Computer time = 3.50 seconds Orbital eigenvalues (eV) -42.63222 -38.41172 -38.14457 -34.52952 -34.31919 -33.80833 -32.39582 -30.54657 -28.11982 -26.23744 -25.01269 -22.32857 -21.42022 -19.77635 -19.17520 -18.07156 -17.41422 -16.83882 -16.39153 -15.54523 -15.23107 -15.12921 -14.79154 -13.98616 -13.31049 -13.20791 -13.14525 -12.91880 -12.66263 -11.50115 -10.95141 -10.92411 -10.80460 -10.56259 -10.32135 -10.22891 -10.14919 -9.93627 -9.23787 -8.83361 -8.75750 -6.85075 -3.95166 -0.09453 1.22935 1.48791 2.20168 2.58717 2.74459 2.81711 2.89677 3.28887 3.71416 4.02373 4.24253 4.37018 4.57663 4.86620 4.91862 5.14316 5.27277 5.50916 5.62549 6.27324 6.51907 6.87979 6.98538 7.54430 7.77298 8.11079 8.56613 9.05173 9.53950 10.22686 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.023557 B = 0.009141 C = 0.008027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.298948 B = 3062.302764 C = 3487.224383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.434 5.434 3 C 0.215 3.785 4 N -0.449 5.449 5 C 0.100 3.900 6 N 0.020 4.980 7 O -0.140 6.140 8 O -0.174 6.174 9 C 0.103 3.897 10 C 0.452 3.548 11 O -0.554 6.554 12 N -0.512 5.512 13 C -0.339 4.339 14 H 0.129 0.871 15 C 0.061 3.939 16 N -0.813 5.813 17 Si 0.877 3.123 18 H -0.263 1.263 19 H -0.266 1.266 20 H -0.263 1.263 21 H 0.092 0.908 22 H 0.101 0.899 23 H 0.104 0.896 24 H 0.232 0.768 25 H 0.369 0.631 26 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 13.719 1.653 14.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.117 5.117 3 C -0.070 4.070 4 N -0.169 5.169 5 C -0.115 4.115 6 N 0.497 4.503 7 O -0.332 6.332 8 O -0.363 6.363 9 C -0.026 4.026 10 C 0.238 3.762 11 O -0.438 6.438 12 N -0.144 5.144 13 C -0.470 4.470 14 H 0.147 0.853 15 C -0.155 4.155 16 N -0.445 5.445 17 Si 0.701 3.299 18 H -0.188 1.188 19 H -0.190 1.190 20 H -0.188 1.188 21 H 0.111 0.889 22 H 0.119 0.881 23 H 0.123 0.877 24 H 0.248 0.752 25 H 0.202 0.798 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.308 13.927 1.072 14.618 hybrid contribution -0.135 0.022 1.324 1.331 sum -4.443 13.949 2.397 14.834 Atomic orbital electron populations 1.22428 0.73634 1.06656 1.05033 1.45884 1.09213 1.05513 1.51101 1.25086 0.83267 0.94347 1.04260 1.69420 1.20319 1.08782 1.18383 1.19865 0.82364 0.89202 1.20029 1.49087 1.01727 1.02716 0.96751 1.96422 1.95506 0.86683 1.54568 1.96237 1.09627 1.74720 1.55741 1.21982 0.88769 0.91076 1.00791 1.15610 0.91595 0.82938 0.86061 1.90738 1.59333 1.62257 1.31462 1.40903 1.52130 1.14813 1.06506 1.20414 1.39998 0.90165 0.96405 0.85335 1.26673 0.95477 0.95080 0.98261 1.68582 1.33507 1.12368 1.30071 0.86702 0.79488 0.80877 0.82820 1.18831 1.19023 1.18758 0.88930 0.88060 0.87700 0.75237 0.79840 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 11.07 59.85 0.66 1.20 15 2 N -0.43 -5.75 3.17 -121.70 -0.39 -6.14 15 3 C 0.21 2.52 12.50 -90.60 -1.13 1.39 15 4 N -0.45 -7.69 11.19 -11.20 -0.13 -7.81 15 5 C 0.10 2.06 8.20 -145.17 -1.19 0.87 15 6 N 0.02 0.45 4.98 33.04 0.16 0.62 15 7 O -0.14 -3.49 18.57 -31.57 -0.59 -4.08 15 8 O -0.17 -3.91 19.97 -31.57 -0.63 -4.54 15 9 C 0.10 1.99 6.69 -81.78 -0.55 1.44 15 10 C 0.45 10.53 5.70 -12.92 -0.07 10.46 15 11 O -0.55 -15.25 16.64 5.26 0.09 -15.16 15 12 N -0.51 -11.83 5.01 -10.96 -0.05 -11.89 15 13 C -0.34 -8.89 10.42 -13.48 -0.14 -9.03 15 14 H 0.13 3.86 7.31 -52.49 -0.38 3.47 15 15 C 0.06 1.49 5.70 -15.16 -0.09 1.41 15 16 N -0.81 -20.92 13.88 56.00 0.78 -20.14 15 17 Si 0.88 17.35 27.86 -169.99 -4.74 12.61 15 18 H -0.26 -4.89 7.11 56.52 0.40 -4.48 15 19 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 20 H -0.26 -5.06 6.62 56.52 0.37 -4.69 15 21 H 0.09 0.61 8.14 -51.93 -0.42 0.18 15 22 H 0.10 0.45 8.14 -51.93 -0.42 0.03 15 23 H 0.10 1.12 7.80 -51.93 -0.40 0.72 15 24 H 0.23 1.23 8.06 -52.49 -0.42 0.81 15 25 H 0.37 7.61 5.94 -40.82 -0.24 7.37 15 26 H 0.29 6.68 8.26 -40.82 -0.34 6.34 15 LS Contribution 256.05 15.07 3.86 3.86 Total: -1.00 -34.41 256.05 -5.60 -40.01 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -1.46 Total: 4.93 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -2.51 Total: 7.73 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.38 Total: -45.37 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -1.13 Total: -23.78 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -4.74 Total: 12.61 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -34.41 -5.60 -40.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216485389.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.819 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.50 seconds