Wall clock time and date at job start Mon Mar 30 2020 04:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34450 * 126.44967 * 2 1 4 4 N 1.30878 * 109.42026 * 180.27790 * 3 2 1 5 5 C 1.33250 * 109.77665 * 359.72884 * 4 3 2 6 6 N 1.48008 * 126.20960 * 179.97438 * 5 4 3 7 7 O 1.31703 * 119.99992 * 180.02562 * 6 5 4 8 8 O 1.31701 * 119.99944 * 0.02562 * 6 5 4 9 9 C 1.37882 * 107.57986 * 359.97438 * 5 4 3 10 10 C 1.46518 * 126.94167 * 179.97438 * 9 5 4 11 11 O 1.21618 * 120.00250 * 279.53780 * 10 9 5 12 12 N 1.34780 * 119.99774 * 99.52913 * 10 9 5 13 13 C 1.33238 * 120.00235 * 174.84009 * 12 10 9 14 14 H 1.07999 * 119.99764 * 359.97438 * 13 12 10 15 15 C 1.46796 * 120.00360 * 179.72848 * 13 12 10 16 16 N 1.29308 * 120.00071 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99710 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46946 * 90.00160 * 17 15 13 19 19 H 1.48500 * 109.46989 * 210.00050 * 17 15 13 20 20 H 1.48496 * 109.46988 * 330.00187 * 17 15 13 21 21 H 1.08999 * 109.47016 * 275.14021 * 1 2 3 22 22 H 1.08999 * 109.47325 * 35.13844 * 1 2 3 23 23 H 1.08996 * 109.47222 * 155.13549 * 1 2 3 24 24 H 1.08002 * 125.28563 * 0.02562 * 3 2 1 25 25 H 0.97004 * 120.00070 * 354.84168 * 12 10 9 26 26 H 0.96997 * 119.99772 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2638 1.0815 0.0000 4 7 3.5152 0.6982 -0.0060 5 6 3.5791 -0.6328 -0.0041 6 7 4.8138 -1.4489 -0.0099 7 8 4.7343 -2.7635 -0.0077 8 8 5.9920 -0.8604 -0.0171 9 6 2.2861 -1.1117 0.0041 10 6 1.8672 -2.5158 0.0083 11 8 1.8545 -3.1497 -1.0295 12 7 1.4962 -3.1048 1.1624 13 6 1.0178 -4.3483 1.1520 14 1 0.9271 -4.8841 0.2187 15 6 0.6193 -4.9920 2.4096 16 7 0.1546 -6.1987 2.3994 17 14 0.7834 -4.0680 4.0247 18 1 -0.4712 -3.3219 4.2979 19 1 1.0344 -5.0339 5.1244 20 1 1.9175 -3.1135 3.9358 21 1 -0.3633 0.0921 1.0235 22 1 -0.3634 0.8404 -0.5915 23 1 -0.3633 -0.9324 -0.4321 24 1 1.9253 2.1071 0.0004 25 1 1.5773 -2.6234 2.0006 26 1 -0.1084 -6.6241 3.2305 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216485389.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:56 Heat of formation + Delta-G solvation = 45.773652 kcal Electronic energy + Delta-G solvation = -17041.055524 eV Core-core repulsion = 13932.612628 eV Total energy + Delta-G solvation = -3108.442896 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.069 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.92494 -40.28246 -39.86828 -36.28009 -35.73554 -35.51765 -34.34274 -32.02300 -29.37284 -27.66653 -26.70328 -23.84806 -22.80307 -21.54164 -20.90858 -19.59442 -19.11803 -18.38538 -17.77608 -17.14504 -16.75849 -16.53474 -16.10747 -15.73003 -15.03228 -14.83313 -14.51648 -14.09708 -13.71279 -13.10546 -12.68415 -12.67091 -12.50246 -12.14746 -11.99235 -11.97254 -11.74304 -11.32984 -11.02178 -10.67610 -10.39894 -8.73884 -5.99673 -1.85157 -0.31269 0.14737 0.90772 1.21704 1.24256 1.32886 1.34795 1.62398 2.03336 2.43885 2.80802 3.06418 3.32946 3.62431 3.73503 4.08349 4.32415 4.52015 4.64180 4.70675 5.04383 5.29795 5.61507 5.77219 6.14827 6.17512 6.64580 7.09080 7.67898 8.38619 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.023557 B = 0.009141 C = 0.008027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.298948 B = 3062.302764 C = 3487.224383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.414 5.414 3 C 0.272 3.728 4 N -0.480 5.480 5 C 0.085 3.915 6 N 0.021 4.979 7 O -0.230 6.230 8 O -0.145 6.145 9 C 0.082 3.918 10 C 0.463 3.537 11 O -0.609 6.609 12 N -0.506 5.506 13 C -0.381 4.381 14 H 0.068 0.932 15 C 0.022 3.978 16 N -0.858 5.858 17 Si 0.954 3.046 18 H -0.230 1.230 19 H -0.260 1.260 20 H -0.254 1.254 21 H 0.123 0.877 22 H 0.158 0.842 23 H 0.074 0.926 24 H 0.309 0.691 25 H 0.385 0.615 26 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.603 18.614 3.571 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.095 5.095 3 C -0.012 4.012 4 N -0.201 5.201 5 C -0.130 4.130 6 N 0.492 4.508 7 O -0.401 6.401 8 O -0.348 6.348 9 C -0.050 4.050 10 C 0.250 3.750 11 O -0.496 6.496 12 N -0.138 5.138 13 C -0.511 4.511 14 H 0.086 0.914 15 C -0.191 4.191 16 N -0.490 5.490 17 Si 0.772 3.228 18 H -0.153 1.153 19 H -0.184 1.184 20 H -0.178 1.178 21 H 0.142 0.858 22 H 0.176 0.824 23 H 0.093 0.907 24 H 0.324 0.676 25 H 0.220 0.780 26 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.785 18.643 3.001 19.749 hybrid contribution 0.245 -1.193 0.595 1.356 sum -5.540 17.449 3.597 18.658 Atomic orbital electron populations 1.23005 0.70274 1.07585 1.07958 1.46186 1.10867 1.03673 1.48807 1.26681 0.80999 0.95963 0.97588 1.69474 1.23359 1.06352 1.20888 1.20003 0.81111 0.90576 1.21341 1.49455 1.02707 1.02824 0.95818 1.96446 1.95766 0.87851 1.60023 1.96175 1.11054 1.74337 1.53186 1.21160 0.89602 0.90706 1.03547 1.16066 0.89279 0.84534 0.85077 1.90694 1.60936 1.64530 1.33455 1.40625 1.52271 1.13781 1.07139 1.19916 1.44063 0.91647 0.95491 0.91439 1.27618 0.93711 0.95867 1.01867 1.68686 1.33979 1.14269 1.32064 0.85569 0.81026 0.79763 0.76454 1.15308 1.18351 1.17825 0.85835 0.82371 0.90675 0.67648 0.78044 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.59 11.07 127.77 1.41 2.00 15 2 N -0.41 -9.06 3.17 -538.96 -1.71 -10.77 15 3 C 0.27 4.55 12.50 180.34 2.25 6.80 15 4 N -0.48 -14.50 11.19 -189.35 -2.12 -16.62 15 5 C 0.08 3.39 8.20 129.16 1.06 4.45 15 6 N 0.02 1.00 4.98 -49.39 -0.25 0.75 15 7 O -0.23 -12.37 18.57 3.51 0.07 -12.30 15 8 O -0.15 -6.51 19.97 3.51 0.07 -6.44 15 9 C 0.08 3.10 6.69 40.21 0.27 3.37 15 10 C 0.46 22.58 5.70 86.40 0.49 23.07 15 11 O -0.61 -36.17 16.64 -4.09 -0.07 -36.24 15 12 N -0.51 -24.29 5.01 -306.83 -1.54 -25.83 15 13 C -0.38 -21.40 10.42 86.72 0.90 -20.50 15 14 H 0.07 4.52 7.31 -2.91 -0.02 4.50 15 15 C 0.02 1.11 5.70 87.30 0.50 1.60 15 16 N -0.86 -45.96 13.88 23.26 0.32 -45.64 15 17 Si 0.95 34.89 27.86 68.60 1.91 36.80 15 18 H -0.23 -7.25 7.11 99.48 0.71 -6.54 15 19 H -0.26 -9.24 7.11 99.48 0.71 -8.53 15 20 H -0.25 -8.86 6.62 99.48 0.66 -8.20 15 21 H 0.12 0.84 8.14 -2.39 -0.02 0.82 15 22 H 0.16 0.18 8.14 -2.39 -0.02 0.16 15 23 H 0.07 1.45 7.80 -2.39 -0.02 1.43 15 24 H 0.31 0.07 8.06 -2.91 -0.02 0.04 15 25 H 0.38 15.77 5.94 -92.71 -0.55 15.22 15 26 H 0.30 14.18 8.26 -92.71 -0.77 13.41 15 Total: -1.00 -87.41 256.05 4.23 -83.18 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.65 Total: 12.31 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: 6.89 Total: 20.81 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -5.29 Total: -98.11 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: 0.07 Total: -54.98 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 1.91 Total: 36.80 kcal Total: -87.41 4.23 -83.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216485389.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.955 kcal (2) G-P(sol) polarization free energy of solvation -87.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds