Wall clock time and date at job start Mon Mar 30 2020 04:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47163 * 2 1 4 4 N 1.46503 * 109.47355 * 119.99923 * 2 1 3 5 5 C 1.36894 * 119.99809 * 246.60973 * 4 2 1 6 6 H 1.08001 * 120.00514 * 37.65908 * 5 4 2 7 7 C 1.39002 * 119.99594 * 217.66117 * 5 4 2 8 8 N 1.31403 * 120.00028 * 17.52267 * 7 5 4 9 9 Si 1.86808 * 120.00156 * 197.52366 * 7 5 4 10 10 H 1.48496 * 109.46838 * 89.99885 * 9 7 5 11 11 H 1.48494 * 109.47047 * 210.00068 * 9 7 5 12 12 H 1.48505 * 109.46700 * 329.99823 * 9 7 5 13 13 C 1.34769 * 119.99903 * 66.60039 * 4 2 1 14 14 O 1.21726 * 119.99871 * 186.00842 * 13 4 2 15 15 C 1.46561 * 120.00307 * 6.00549 * 13 4 2 16 16 C 1.36776 * 126.18276 * 186.21746 * 15 13 4 17 17 N 1.30940 * 113.92252 * 180.02562 * 16 15 13 18 18 C 1.29375 * 117.46921 * 359.97438 * 17 16 15 19 19 S 1.70927 * 110.59555 * 0.02562 * 18 17 16 20 20 H 1.08998 * 109.47658 * 306.46289 * 1 2 3 21 21 H 1.09003 * 109.47141 * 66.46385 * 1 2 3 22 22 H 1.09003 * 109.47048 * 186.45345 * 1 2 3 23 23 H 1.08998 * 109.47398 * 239.99963 * 2 1 3 24 24 H 1.09002 * 109.47558 * 181.14478 * 3 2 1 25 25 H 1.09010 * 109.47274 * 301.14143 * 3 2 1 26 26 H 1.08999 * 109.47129 * 61.13611 * 3 2 1 27 27 H 0.97004 * 119.99719 * 179.97438 * 8 7 5 28 28 H 1.08004 * 123.03643 * 0.03710 * 16 15 13 29 29 H 1.08002 * 124.70215 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.6902 0.0076 2.1632 6 1 2.3856 1.0131 2.4134 7 6 3.7646 -0.5777 2.8230 8 7 4.3550 -1.6333 2.3094 9 14 4.3691 0.1364 4.4399 10 1 3.6467 -0.5076 5.5662 11 1 5.8261 -0.1148 4.5780 12 1 4.1149 1.5994 4.4606 13 6 1.8059 -2.0131 1.3446 14 8 2.1135 -2.5660 2.3846 15 6 1.2046 -2.7858 0.2540 16 6 0.8248 -4.0986 0.3084 17 7 0.3125 -4.5499 -0.8090 18 6 0.2281 -3.7256 -1.8025 19 16 0.8408 -2.1912 -1.3645 20 1 -0.3634 0.6107 0.8264 21 1 -0.3633 0.4104 -0.9422 22 1 -0.3633 -1.0212 0.1155 23 1 1.8933 -0.5138 -0.8899 24 1 3.1297 1.4426 -0.0205 25 1 1.6599 1.9623 -0.8796 26 1 1.6933 1.9504 0.9000 27 1 5.1050 -2.0414 2.7697 28 1 0.9371 -4.7079 1.1931 29 1 -0.1738 -3.9727 -2.7741 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229751549.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:57 Heat of formation + Delta-G solvation = 10.429221 kcal Electronic energy + Delta-G solvation = -15654.917790 eV Core-core repulsion = 13091.235459 eV Total energy + Delta-G solvation = -2563.682331 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 4.30 seconds Orbital eigenvalues (eV) -40.83519 -39.93503 -37.05641 -34.57521 -31.86463 -31.34736 -28.57859 -27.09222 -26.15582 -23.09974 -22.26209 -20.40545 -19.78345 -17.95427 -17.62897 -16.76621 -16.53366 -15.83199 -15.62404 -15.19105 -14.78605 -14.54638 -14.17961 -13.75489 -13.48646 -13.19887 -12.91710 -12.74180 -12.49377 -12.42201 -12.17432 -12.06726 -11.85460 -10.93802 -10.50602 -10.17820 -10.08753 -9.70391 -9.19816 -8.25342 -5.96859 -0.47912 0.43572 0.87426 1.38926 1.47212 1.52356 1.75196 2.29915 2.74378 2.99403 3.27892 3.51798 3.99129 4.12206 4.24300 4.35746 4.42475 4.54036 4.85437 4.88403 5.03617 5.11303 5.22595 5.35921 5.47426 5.54011 6.10402 6.76586 6.91661 7.13432 7.55726 8.23905 8.82526 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.032287 B = 0.010178 C = 0.008311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.006504 B = 2750.431362 C = 3368.353555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 C -0.125 4.125 4 N -0.449 5.449 5 C -0.341 4.341 6 H 0.102 0.898 7 C 0.006 3.994 8 N -0.861 5.861 9 Si 0.976 3.024 10 H -0.293 1.293 11 H -0.284 1.284 12 H -0.245 1.245 13 C 0.517 3.483 14 O -0.581 6.581 15 C -0.283 4.283 16 C 0.063 3.937 17 N -0.500 5.500 18 C -0.028 4.028 19 S 0.254 5.746 20 H 0.058 0.942 21 H 0.108 0.892 22 H 0.046 0.954 23 H 0.065 0.935 24 H 0.045 0.955 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.260 0.740 28 H 0.161 0.839 29 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.407 4.979 -10.705 13.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.001 3.999 3 C -0.183 4.183 4 N -0.169 5.169 5 C -0.469 4.469 6 H 0.119 0.881 7 C -0.200 4.200 8 N -0.496 5.496 9 Si 0.801 3.199 10 H -0.220 1.220 11 H -0.210 1.210 12 H -0.168 1.168 13 C 0.306 3.694 14 O -0.464 6.464 15 C -0.408 4.408 16 C -0.095 4.095 17 N -0.214 5.214 18 C -0.321 4.321 19 S 0.509 5.491 20 H 0.077 0.923 21 H 0.126 0.874 22 H 0.065 0.935 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.113 0.887 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.178 0.822 29 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -7.215 5.000 -10.876 13.976 hybrid contribution 0.827 -0.954 1.875 2.260 sum -6.388 4.047 -9.001 11.756 Atomic orbital electron populations 1.22524 0.93728 1.01958 1.04227 1.21628 0.95422 0.95679 0.87126 1.21755 1.00973 0.92725 1.02816 1.43622 1.48934 1.06209 1.18147 1.19479 1.10351 1.00764 1.16283 0.88087 1.26145 0.95503 0.96345 1.02018 1.70009 1.19594 1.21788 1.38229 0.85210 0.76676 0.79416 0.78639 1.21970 1.20994 1.16845 1.16886 0.82835 0.83396 0.86313 1.90589 1.54776 1.70488 1.30594 1.26480 1.13250 1.00373 1.00664 1.22179 0.98275 0.91960 0.97048 1.66224 1.18203 1.37104 0.99833 1.29724 1.02974 0.96191 1.03246 1.83813 1.53003 1.10838 1.01407 0.92334 0.87380 0.93478 0.91800 0.93577 0.88742 0.92269 0.93085 0.82188 0.74663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.83 7.78 71.98 0.56 -4.27 15 2 C 0.11 3.83 2.81 44.99 0.13 3.96 15 3 C -0.13 -3.90 8.17 71.98 0.59 -3.31 15 4 N -0.45 -22.26 2.67 -617.75 -1.65 -23.92 15 5 C -0.34 -18.16 8.02 84.09 0.67 -17.48 15 6 H 0.10 4.96 6.48 -2.91 -0.02 4.94 15 7 C 0.01 0.36 4.42 84.94 0.38 0.74 15 8 N -0.86 -52.72 11.24 21.67 0.24 -52.48 15 9 Si 0.98 44.79 29.59 68.60 2.03 46.82 15 10 H -0.29 -14.08 7.11 99.48 0.71 -13.37 15 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 12 H -0.25 -10.03 7.11 99.48 0.71 -9.32 15 13 C 0.52 27.96 6.48 86.41 0.56 28.52 15 14 O -0.58 -37.10 14.32 -4.43 -0.06 -37.16 15 15 C -0.28 -12.38 5.39 24.10 0.13 -12.25 15 16 C 0.06 2.64 11.17 84.48 0.94 3.59 15 17 N -0.50 -17.90 10.50 -201.76 -2.12 -20.02 15 18 C -0.03 -0.77 12.21 130.60 1.59 0.83 15 19 S 0.25 7.45 15.84 -56.49 -0.89 6.55 15 20 H 0.06 1.75 8.14 -2.39 -0.02 1.73 15 21 H 0.11 2.16 8.14 -2.39 -0.02 2.14 15 22 H 0.05 1.51 5.07 -10.16 -0.05 1.46 15 23 H 0.07 2.22 5.04 -18.73 -0.09 2.13 15 24 H 0.05 1.62 7.96 -2.39 -0.02 1.60 15 25 H 0.09 2.06 8.14 -2.38 -0.02 2.04 15 26 H 0.06 1.89 6.85 -2.39 -0.02 1.88 15 27 H 0.26 15.44 8.31 -92.71 -0.77 14.67 15 28 H 0.16 7.07 8.06 -2.91 -0.02 7.05 15 29 H 0.24 3.85 8.06 -2.91 -0.02 3.82 15 Total: -1.00 -75.34 252.18 4.14 -71.20 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.05 Total: 8.69 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 5.55 Total: 0.31 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -3.53 Total: -96.41 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -0.06 Total: -37.16 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 7.45 SS G_CDS: -0.89 Total: 6.55 kcal Total: -75.34 4.14 -71.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229751549.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.626 kcal (2) G-P(sol) polarization free energy of solvation -75.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.30 seconds