Wall clock time and date at job start Mon Mar 30 2020 03:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 120.00502 * 2 1 4 4 H 1.48500 * 109.47304 * 269.99929 * 3 2 1 5 5 H 1.48506 * 109.46701 * 29.99298 * 3 2 1 6 6 H 1.48490 * 109.47551 * 149.99597 * 3 2 1 7 7 C 1.38809 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99735 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99688 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99780 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47567 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99335 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00648 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00305 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47176 * 180.02562 * 14 13 11 16 16 C 1.40900 * 126.29168 * 270.29647 * 15 14 13 17 17 C 1.34850 * 107.41621 * 180.12828 * 16 15 14 18 18 N 1.36348 * 108.21820 * 359.62102 * 17 16 15 19 19 H 0.97004 * 125.63569 * 180.26281 * 18 17 16 20 20 C 1.34858 * 126.29153 * 90.00037 * 15 14 13 21 21 H 0.97006 * 119.99820 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47350 * 59.99466 * 10 9 7 23 23 H 1.09004 * 109.47188 * 300.00252 * 10 9 7 24 24 H 0.97005 * 120.00009 * 0.02562 * 13 11 10 25 25 H 1.08999 * 109.46890 * 59.99924 * 14 13 11 26 26 H 1.08999 * 109.46875 * 300.00319 * 14 13 11 27 27 H 1.07999 * 126.29093 * 359.97438 * 16 15 14 28 28 H 1.08002 * 125.89234 * 179.89015 * 17 16 15 29 29 H 1.07990 * 125.89063 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5729 -3.2328 0.0021 12 8 6.3439 -2.2965 0.0025 13 7 6.0455 -4.4949 0.0026 14 6 7.4905 -4.7360 0.0032 15 6 7.7522 -6.2201 0.0031 16 6 7.8907 -7.0426 1.1387 17 6 8.1175 -8.2983 0.7024 18 7 8.1156 -8.2826 -0.6610 19 1 8.2512 -9.0526 -1.2353 20 6 7.8912 -7.0060 -1.0839 21 1 -0.4850 0.8401 -0.0004 22 1 3.6438 -3.4315 -0.8893 23 1 3.6432 -3.4319 0.8907 24 1 5.4289 -5.2437 0.0019 25 1 7.9332 -4.2887 0.8932 26 1 7.9338 -4.2892 -0.8868 27 1 7.8293 -6.7252 2.1692 28 1 8.2696 -9.1673 1.3253 29 1 7.8339 -6.6805 -2.1120 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231725915.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:58 Heat of formation + Delta-G solvation = 4.899116 kcal Electronic energy + Delta-G solvation = -13886.672885 eV Core-core repulsion = 11322.750751 eV Total energy + Delta-G solvation = -2563.922135 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.31235 -39.00158 -34.71124 -32.39464 -31.54917 -29.79010 -28.80215 -25.67609 -25.24792 -21.05352 -20.31973 -19.69390 -18.55980 -17.64885 -16.24512 -15.65526 -15.16157 -14.90543 -14.28989 -13.91990 -13.79941 -13.67071 -13.22959 -13.03748 -12.75420 -12.25181 -12.03651 -11.54495 -11.21826 -10.96676 -10.55431 -9.82457 -9.56252 -8.96386 -8.95453 -8.78938 -8.44308 -8.39587 -6.85887 -6.24683 -3.95573 1.98619 2.55759 2.94429 3.08135 3.11067 3.36662 3.50623 3.55191 3.93028 4.37682 4.81722 4.86487 4.91832 5.06035 5.14375 5.21528 5.43453 5.65032 5.85339 5.86640 5.90519 6.10359 6.18621 6.67155 6.72258 6.86149 7.30085 7.80484 7.98526 8.46194 8.63492 9.21714 10.84544 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.065280 B = 0.004181 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.821048 B = 6694.976647 C = 6923.208346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.094 3.906 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.520 4.520 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.123 4.123 11 C 0.528 3.472 12 O -0.524 6.524 13 N -0.731 5.731 14 C 0.195 3.805 15 C -0.186 4.186 16 C -0.183 4.183 17 C -0.020 4.020 18 N -0.561 5.561 19 H 0.415 0.585 20 C 0.006 3.994 21 H 0.270 0.730 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.399 0.601 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.137 0.863 28 H 0.163 0.837 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.336 -17.688 -0.898 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.274 4.274 11 C 0.314 3.686 12 O -0.399 6.399 13 N -0.385 5.385 14 C 0.071 3.929 15 C -0.193 4.193 16 C -0.208 4.208 17 C -0.151 4.151 18 N -0.155 5.155 19 H 0.251 0.749 20 C -0.126 4.126 21 H 0.080 0.920 22 H 0.114 0.886 23 H 0.115 0.885 24 H 0.233 0.767 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.155 0.845 28 H 0.181 0.819 29 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 16.489 -16.141 -0.972 23.095 hybrid contribution -1.069 -1.142 -0.258 1.585 sum 15.420 -17.283 -1.231 23.194 Atomic orbital electron populations 1.69946 1.05915 1.27697 1.48260 1.24725 0.94463 0.98986 0.93237 0.86721 0.81921 0.83230 0.79898 1.19253 1.20002 1.15879 1.22337 0.88385 0.97508 1.58551 0.89420 1.84770 1.09113 1.00374 1.97415 1.23280 0.94301 1.04084 1.05730 1.20268 0.90468 0.82421 0.75417 1.90692 1.58774 1.42281 1.48132 1.46101 1.07519 1.07755 1.77098 1.19434 0.81303 0.89893 1.02242 1.19532 1.11470 0.95268 0.93042 1.20913 1.08615 0.92487 0.98760 1.21865 1.10421 0.99632 0.83154 1.42014 1.57016 1.09286 1.07189 0.74904 1.21799 1.07940 0.83533 0.99359 0.92005 0.88615 0.88534 0.76679 0.91145 0.91428 0.84533 0.81931 0.81726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.90 13.97 55.49 0.78 -26.12 15 2 C 0.09 2.80 5.50 -17.43 -0.10 2.70 15 3 Si 0.86 22.11 27.74 -169.99 -4.72 17.39 15 4 H -0.27 -6.81 7.11 56.52 0.40 -6.41 15 5 H -0.27 -6.81 7.11 56.52 0.40 -6.40 15 6 H -0.23 -6.05 6.74 56.52 0.38 -5.67 15 7 C -0.52 -15.24 10.04 30.94 0.31 -14.92 15 8 H 0.09 2.67 8.03 -52.49 -0.42 2.25 15 9 S -0.14 -3.71 18.55 -107.50 -1.99 -5.71 15 10 C -0.12 -2.47 6.16 36.00 0.22 -2.25 15 11 C 0.53 9.82 7.85 -10.99 -0.09 9.73 15 12 O -0.52 -11.72 15.86 5.55 0.09 -11.63 15 13 N -0.73 -10.15 5.55 -61.48 -0.34 -10.50 15 14 C 0.20 2.46 6.17 -5.20 -0.03 2.43 15 15 C -0.19 -1.95 5.51 -104.82 -0.58 -2.52 15 16 C -0.18 -1.78 10.81 -39.78 -0.43 -2.21 15 17 C -0.02 -0.15 11.94 -16.75 -0.20 -0.35 15 18 N -0.56 -3.69 6.07 -12.85 -0.08 -3.77 15 19 H 0.41 1.40 8.96 -40.82 -0.37 1.04 15 20 C 0.01 0.05 11.85 -16.75 -0.20 -0.14 15 21 H 0.27 7.66 8.31 -40.82 -0.34 7.32 15 22 H 0.10 1.78 8.14 -51.91 -0.42 1.36 15 23 H 0.10 1.81 8.14 -51.91 -0.42 1.38 15 24 H 0.40 4.66 8.46 -40.82 -0.35 4.31 15 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 27 H 0.14 1.27 8.06 -52.49 -0.42 0.84 15 28 H 0.16 0.77 8.06 -52.49 -0.42 0.35 15 29 H 0.17 1.10 8.06 -52.49 -0.42 0.68 15 LS Contribution 275.02 15.07 4.14 4.14 Total: -1.00 -35.26 275.02 -6.46 -41.71 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -3.25 Total: 2.02 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -1.09 Total: -7.54 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.36 Total: -40.39 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.72 Total: 17.39 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.71 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -35.26 -6.46 -41.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231725915.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.610 kcal (2) G-P(sol) polarization free energy of solvation -35.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds