Wall clock time and date at job start Mon Mar 30 2020 03:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 120.00502 * 2 1 4 4 H 1.48500 * 109.47304 * 269.99929 * 3 2 1 5 5 H 1.48506 * 109.46701 * 29.99298 * 3 2 1 6 6 H 1.48490 * 109.47551 * 149.99597 * 3 2 1 7 7 C 1.38809 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99735 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99688 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99780 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47567 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99335 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00648 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00305 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47176 * 180.02562 * 14 13 11 16 16 C 1.40900 * 126.29168 * 270.29647 * 15 14 13 17 17 C 1.34850 * 107.41621 * 180.12828 * 16 15 14 18 18 N 1.36348 * 108.21820 * 359.62102 * 17 16 15 19 19 H 0.97004 * 125.63569 * 180.26281 * 18 17 16 20 20 C 1.34858 * 126.29153 * 90.00037 * 15 14 13 21 21 H 0.97006 * 119.99820 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47350 * 59.99466 * 10 9 7 23 23 H 1.09004 * 109.47188 * 300.00252 * 10 9 7 24 24 H 0.97005 * 120.00009 * 0.02562 * 13 11 10 25 25 H 1.08999 * 109.46890 * 59.99924 * 14 13 11 26 26 H 1.08999 * 109.46875 * 300.00319 * 14 13 11 27 27 H 1.07999 * 126.29093 * 359.97438 * 16 15 14 28 28 H 1.08002 * 125.89234 * 179.89015 * 17 16 15 29 29 H 1.07990 * 125.89063 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5729 -3.2328 0.0021 12 8 6.3439 -2.2965 0.0025 13 7 6.0455 -4.4949 0.0026 14 6 7.4905 -4.7360 0.0032 15 6 7.7522 -6.2201 0.0031 16 6 7.8907 -7.0426 1.1387 17 6 8.1175 -8.2983 0.7024 18 7 8.1156 -8.2826 -0.6610 19 1 8.2512 -9.0526 -1.2353 20 6 7.8912 -7.0060 -1.0839 21 1 -0.4850 0.8401 -0.0004 22 1 3.6438 -3.4315 -0.8893 23 1 3.6432 -3.4319 0.8907 24 1 5.4289 -5.2437 0.0019 25 1 7.9332 -4.2887 0.8932 26 1 7.9338 -4.2892 -0.8868 27 1 7.8293 -6.7252 2.1692 28 1 8.2696 -9.1673 1.3253 29 1 7.8339 -6.6805 -2.1120 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231725915.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:58 Heat of formation + Delta-G solvation = -21.103470 kcal Electronic energy + Delta-G solvation = -13887.800442 eV Core-core repulsion = 11322.750751 eV Total energy + Delta-G solvation = -2565.049691 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.96407 -40.45122 -35.94742 -34.65924 -32.56510 -30.88959 -29.76644 -27.86067 -26.34873 -21.75865 -21.67305 -20.52772 -19.82140 -19.05972 -17.74727 -17.16546 -16.87095 -16.57966 -15.68515 -14.96749 -14.85059 -14.80075 -14.55479 -14.47973 -13.94551 -13.50458 -13.33485 -13.00892 -12.99418 -12.63102 -12.52006 -11.85360 -11.15756 -11.07428 -10.52047 -10.06643 -9.68782 -9.05893 -8.97995 -8.50336 -6.20931 0.99074 1.32702 1.32780 1.49639 1.58991 1.61533 1.87779 2.26518 2.52018 2.60713 2.80692 2.87706 3.93548 4.17281 4.18680 4.27529 4.48124 4.49339 4.54889 4.79289 4.92425 5.19839 5.46715 5.47471 5.72012 5.99686 6.12537 6.18850 6.55555 6.83688 6.94763 7.24520 8.62004 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.065280 B = 0.004181 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.821048 B = 6694.976647 C = 6923.208346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.044 3.956 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.529 4.529 8 H 0.062 0.938 9 S -0.176 6.176 10 C -0.110 4.110 11 C 0.533 3.467 12 O -0.566 6.566 13 N -0.705 5.705 14 C 0.199 3.801 15 C -0.211 4.211 16 C -0.213 4.213 17 C -0.009 4.009 18 N -0.547 5.547 19 H 0.432 0.568 20 C 0.011 3.989 21 H 0.277 0.723 22 H 0.113 0.887 23 H 0.111 0.889 24 H 0.413 0.587 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.132 0.868 28 H 0.193 0.807 29 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.602 -19.273 -1.281 25.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.677 4.677 8 H 0.080 0.920 9 S 0.051 5.949 10 C -0.261 4.261 11 C 0.318 3.682 12 O -0.445 6.445 13 N -0.358 5.358 14 C 0.076 3.924 15 C -0.218 4.218 16 C -0.238 4.238 17 C -0.140 4.140 18 N -0.143 5.143 19 H 0.272 0.728 20 C -0.123 4.123 21 H 0.086 0.914 22 H 0.131 0.869 23 H 0.130 0.870 24 H 0.249 0.751 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.150 0.850 28 H 0.210 0.790 29 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 17.752 -17.803 -1.364 25.179 hybrid contribution -1.420 -0.871 -0.144 1.672 sum 16.332 -18.674 -1.508 24.855 Atomic orbital electron populations 1.70020 1.07282 1.29004 1.49180 1.25587 0.95315 1.02314 0.92907 0.85846 0.80650 0.79505 0.80238 1.18640 1.18282 1.16120 1.22470 0.90274 0.96697 1.58213 0.91996 1.84696 1.06376 1.06253 1.97578 1.23273 0.95982 0.99523 1.07357 1.19979 0.89359 0.83398 0.75443 1.90680 1.59334 1.43841 1.50660 1.45952 1.08721 1.06473 1.74696 1.19419 0.79770 0.91777 1.01480 1.19386 1.13980 0.94108 0.94365 1.21054 1.10462 0.93618 0.98628 1.22280 1.08340 0.99724 0.83674 1.42054 1.55633 1.09353 1.07250 0.72815 1.22032 1.06634 0.83958 0.99658 0.91378 0.86868 0.87029 0.75055 0.92441 0.91670 0.84972 0.79023 0.80000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.38 13.97 21.65 0.30 -56.08 15 2 C 0.04 2.62 5.50 84.86 0.47 3.09 15 3 Si 0.92 45.64 27.74 68.60 1.90 47.54 15 4 H -0.26 -12.70 7.11 99.48 0.71 -11.99 15 5 H -0.26 -12.05 7.11 99.48 0.71 -11.34 15 6 H -0.24 -11.84 6.74 99.48 0.67 -11.17 15 7 C -0.53 -31.30 10.04 67.96 0.68 -30.62 15 8 H 0.06 3.86 8.03 -2.91 -0.02 3.83 15 9 S -0.18 -9.08 18.55 -56.49 -1.05 -10.13 15 10 C -0.11 -4.32 6.16 71.23 0.44 -3.88 15 11 C 0.53 19.32 7.85 87.66 0.69 20.00 15 12 O -0.57 -25.24 15.86 -3.05 -0.05 -25.29 15 13 N -0.71 -18.63 5.55 -466.80 -2.59 -21.22 15 14 C 0.20 4.84 6.17 85.63 0.53 5.37 15 15 C -0.21 -4.08 5.51 -19.99 -0.11 -4.19 15 16 C -0.21 -3.81 10.81 22.14 0.24 -3.57 15 17 C -0.01 -0.11 11.94 83.21 0.99 0.88 15 18 N -0.55 -5.41 6.07 -194.56 -1.18 -6.59 15 19 H 0.43 1.32 8.96 -92.71 -0.83 0.49 15 20 C 0.01 0.16 11.85 83.22 0.99 1.15 15 21 H 0.28 15.72 8.31 -92.70 -0.77 14.95 15 22 H 0.11 4.04 8.14 -2.39 -0.02 4.02 15 23 H 0.11 4.04 8.14 -2.39 -0.02 4.02 15 24 H 0.41 8.78 8.46 -92.70 -0.78 7.99 15 25 H 0.06 1.56 8.14 -2.39 -0.02 1.54 15 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 15 27 H 0.13 2.37 8.06 -2.91 -0.02 2.34 15 28 H 0.19 1.10 8.06 -2.91 -0.02 1.07 15 29 H 0.18 1.88 8.06 -2.92 -0.02 1.86 15 Total: -1.00 -76.09 275.02 1.78 -74.31 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -0.47 Total: 9.22 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 4.91 Total: -11.76 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -3.47 Total: -83.89 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.29 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.90 Total: 47.54 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.13 kcal Total: -76.09 1.78 -74.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231725915.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.209 kcal (2) G-P(sol) polarization free energy of solvation -76.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds